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Vertebrate Proteins Predicted from Genomic Sequences
Vertebrate proteins predicted from genomic sequences VWD C8 TIL PTS Mucin2_WxxW F5_F8_type_C FCGBP_N VWC Lethenteron_camtschaticum Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Lethenteron Lethenteron_camtschaticum.0.pep1 Petromyzon_marinus Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon Petromyzon_marinus.0.pep1 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep1 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep2 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep3 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep1 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep2 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep3 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.1.pep1 TILa Cynoglossus_semilaevis Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Cynoglossus_semilaevis.1.pep1 -
35-51 New Data on Pleuropholis Decastroi (Teleostei, Pleuropholidae)
Geo-Eco-Trop., 2019, 43, 1 : 35-51 New data on Pleuropholis decastroi (Teleostei, Pleuropholidae), a “pholidophoriform” fish from the Lower Cretaceous of the Eurafrican Mesogea Nouvelles données sur Pleuropholis decastroi (Teleostei, Pleuropholidae), un poisson “pholidophoriforme” du Crétacé inférieur de la Mésogée eurafricaine Louis TAVERNE 1 & Luigi CAPASSO 2 Résumé: Le crâne et le corps de Pleuropholis decastroi, un poisson fossile de l’Albien (Crétacé inférieur) du sud de l’Italie, sont redécrits en détails. P. decastroi diffère des autres espèces du genre par ses deux nasaux en contact médian et qui séparent complètement le dermethmoïde ( = rostral) des frontaux. Avec son maxillaire extrêmement élargi qui couvre la mâchoire inférieure et son supramaxillaire fortement réduit, P. decastroi semble plus nettement apparenté avec Pleuropholis cisnerosorum, du Jurassique supérieur du Mexique, qu’avec les autres espèces du genre. Par ses mâchoires raccourcies et ses nombreux os orbitaires, Pleuropholis apparaît également comme le genre le plus spécialisé de la famille. La position systématique des Pleuropholidae au sein du groupe des « pholidophoriformes » est discutée. Mots-clés: Pleuropholis decastroi, Albien, Italie du sud, Pleuropholis, Pleuropholidae, “Pholidophoriformes”, ostéologie, position systématique. Abstract: The skull and the body of Pleuropholis decastroi, a fossil fish from the marine Albian (Lower Cretaceous) of southern Italy, are re-described in details. P. decastroi differs from the other species of the genus by their two nasals that are in contact along the mid-line, completely separating the dermethmoid (= rostral) from the frontals. With its extremely broadened maxilla that covers the lower jaw and its strongly reduced supramaxilla, P. decastroi seems more closely related to Pleuropholis cisnerosorum, from the Upper Jurassic of Mexico, than to the other species of the genus. -
A Late Permian Ichthyofauna from the Zechstein Basin, Lithuania-Latvia Region
bioRxiv preprint doi: https://doi.org/10.1101/554998; this version posted February 20, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A late Permian ichthyofauna from the Zechstein Basin, Lithuania-Latvia Region 2 3 Darja Dankina-Beyer1*, Andrej Spiridonov1,4, Ģirts Stinkulis2, Esther Manzanares3, 4 Sigitas Radzevičius1 5 6 1 Department of Geology and Mineralogy, Vilnius University, Vilnius, Lithuania 7 2 Chairman of Bedrock Geology, Faculty of Geography and Earth Sciences, University 8 of Latvia, Riga, Latvia 9 3 Department of Botany and Geology, University of Valencia, Valencia, Spain 10 4 Laboratory of Bedrock Geology, Nature Research Centre, Vilnius, Lithuania 11 12 *[email protected] (DD-B) 13 14 Abstract 15 The late Permian is a transformative time, which ended in one of the most 16 significant extinction events in Earth’s history. Fish assemblages are a major 17 component of marine foods webs. The macroevolution and biogeographic patterns of 18 late Permian fish are currently insufficiently known. In this contribution, the late Permian 19 fish fauna from Kūmas quarry (southern Latvia) is described for the first time. As a 20 result, the studied late Permian Latvian assemblage consisted of isolated 21 chondrichthyan teeth of Helodus sp., ?Acrodus sp., ?Omanoselache sp. and 22 euselachian type dermal denticles as well as many osteichthyan scales of the 23 Haplolepidae and Elonichthydae; numerous teeth of Palaeoniscus, rare teeth findings of 1 bioRxiv preprint doi: https://doi.org/10.1101/554998; this version posted February 20, 2019. -
A New Osteolepidid Fish From
Rea. West. Aust. MU8. 1985, 12(3): 361-377 ANew Osteolepidid Fish from the Upper Devonian Gogo Formation, Western Australia J.A. Long* Abstract A new osteolepidid crossopterygian, Gogonasus andrewsi gen. et sp. nov., is des cribed from a single fronto-ethmoidal shield and associated ethmosphenoid, from the Late Devonian (Frasnian) Gogo Formation, Western Australia. Gogonasus is is distinguished from other osteolepids by the shape and proportions of the fronto ethmoidal shield, absence of palatal fenestrae, well developed basipterygoid pro cesses and moderately broad parasphenoid. The family Osteolepididae is found to be paraphyletic, with Gogonasus being regarded as a plesiomorphic osteolepidid at a similar level of organisation to Thursius. Introduction Much has been published on the well-preserved Late Devonian fish fauna from the Gogo Formation, Western Australia, although to date all the papers describing fish have been on placoderms (Miles 1971; Miles and Dennis 1979; Dennis and Miles 1979-1983; Young 1984), palaeoniscoids (Gardiner 1973, 1984; Gardiner and Bartram 1977) or dipnoans (Miles 1977; Campbell and Barwick 1982a, 1982b, 1983, 1984a). This paper describes the only osteolepiform from the fauna (Gardiner and Miles 1975), a small snout with associated braincase, ANU 21885, housed in the Geology Department, Australian National University. The specimen, collected by the Australian National University on the 1967 Gogo Expedition, was prepared by Dr S.M. Andrews (Royal Scottish Museum) and later returned to the ANU. Onychodus is the only other crossopterygian in the fauna. In its proportions and palatal structure the new specimen provides some additional new points of the anatomy of osteolepiforms. Few Devonian crossopte rygians are known from Australia, and so the specimen is significant in having resemblances to typical Northern Hemisphere species. -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
'Placoderm' (Arthrodira)
Jobbins et al. Swiss J Palaeontol (2021) 140:2 https://doi.org/10.1186/s13358-020-00212-w Swiss Journal of Palaeontology RESEARCH ARTICLE Open Access A large Middle Devonian eubrachythoracid ‘placoderm’ (Arthrodira) jaw from northern Gondwana Melina Jobbins1* , Martin Rücklin2, Thodoris Argyriou3 and Christian Klug1 Abstract For the understanding of the evolution of jawed vertebrates and jaws and teeth, ‘placoderms’ are crucial as they exhibit an impressive morphological disparity associated with the early stages of this process. The Devonian of Morocco is famous for its rich occurrences of arthrodire ‘placoderms’. While Late Devonian strata are rich in arthrodire remains, they are less common in older strata. Here, we describe a large tooth-bearing jaw element of Leptodontich- thys ziregensis gen. et sp. nov., an eubrachythoracid arthrodire from the Middle Devonian of Morocco. This species is based on a large posterior superognathal with a strong dentition. The jawbone displays features considered syna- pomorphies of Late Devonian eubrachythoracid arthrodires, with one posterior and one lateral row of conical teeth oriented postero-lingually. μCT-images reveal internal structures including pulp cavities and dentinous tissues. The posterior orientation of the teeth and the traces of a putative occlusal contact on the lingual side of the bone imply that these teeth were hardly used for feeding. Similar to Compagopiscis and Plourdosteus, functional teeth were pos- sibly present during an earlier developmental stage and have been worn entirely. The morphological features of the jaw element suggest a close relationship with plourdosteids. Its size implies that the animal was rather large. Keywords: Arthrodira, Dentition, Food web, Givetian, Maïder basin, Palaeoecology Introduction important to reconstruct character evolution in early ‘Placoderms’ are considered as a paraphyletic grade vertebrates. -
A Middle Triassic Kyphosichthyiform from Yunnan, China, and Phylogenetic Reassessment of Early Ginglymodians
SUPPLEMENTARY DATA A Middle Triassic kyphosichthyiform from Yunnan, China, and phylogenetic reassessment of early ginglymodians XU Guang-Hui1,2 MA Xin-Ying1,2,3 WU Fei-Xiang1,2 REN Yi1,2,3 (1 Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences Beijing 100044 [email protected]) (2 CAS Center for Excellence in Life and Paleoenvironment Beijing 100044) (3 University of Chinese Academy of Sciences Beijing 100049) Part A Material examined and references Amia calva and Solnhofenamia elongata (Grande and Bemis, 1998); Araripelepidotes temnurus (Maisey, 1991; Thies, 1996); Asialepidotus shingyiensis (Xu and Ma, 2018); Atractosteus spatula, Cuneatus wileyi, Dentilepisosteus laevis, Lepisosteus osseus, Masillosteus janeae, and Obaichthys decoratus (Grande, 2010); Caturus furcatus (Patterson, 1975; Lambers, 1992; Grande and Bemis, 1998; FMNH UC2057); Dorsetichthys (‘Pholidophorus’) bechei (Patterson, 1975; Grande and Bemis, 1998; Arratia, 2013); Elops hawaiensis (Forey, 1973); Fuyuanichthys wangi (Xu et al., 2018); Ichthyokentema purbeckensis (Griffith and Patterson, 1963); Ionoscopus cyprinoides (Grande and Bemis, 1998; Maisey, 1999; FMNH P15472); Isanichthys palustris (Cavin and Suteethorn, 2006); Kyphosichthys grandei (Xu and Wu, 2012; Sun and Ni, 2018); Lashanichthys (‘Sangiorgioichthys’) sui (López-Arbarello et al., 2011); Lashanichthys (‘Sangiorgioichthys’) yangjuanensis (Chen et al, 2014); Lepidotes gigas (Thies, -
The Early Triassic Jurong Fish Fauna, South China Age, Anatomy, Taphonomy, and Global Correlation
Global and Planetary Change 180 (2019) 33–50 Contents lists available at ScienceDirect Global and Planetary Change journal homepage: www.elsevier.com/locate/gloplacha Research article The Early Triassic Jurong fish fauna, South China: Age, anatomy, T taphonomy, and global correlation ⁎ Xincheng Qiua, Yaling Xua, Zhong-Qiang Chena, , Michael J. Bentonb, Wen Wenc, Yuangeng Huanga, Siqi Wua a State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences (Wuhan), Wuhan 430074, China b School of Earth Sciences, University of Bristol, BS8 1QU, UK c Chengdu Center of China Geological Survey, Chengdu 610081, China ARTICLE INFO ABSTRACT Keywords: As the higher trophic guilds in marine food chains, top predators such as larger fishes and reptiles are important Lower Triassic indicators that a marine ecosystem has recovered following a crisis. Early Triassic marine fishes and reptiles Fish nodule therefore are key proxies in reconstructing the ecosystem recovery process after the end-Permian mass extinc- Redox condition tion. In South China, the Early Triassic Jurong fish fauna is the earliest marine vertebrate assemblage inthe Ecosystem recovery period. It is constrained as mid-late Smithian in age based on both conodont biostratigraphy and carbon Taphonomy isotopic correlations. The Jurong fishes are all preserved in calcareous nodules embedded in black shaleofthe Lower Triassic Lower Qinglong Formation, and the fauna comprises at least three genera of Paraseminotidae and Perleididae. The phosphatic fish bodies often show exceptionally preserved interior structures, including net- work structures of possible organ walls and cartilages. Microanalysis reveals the well-preserved micro-structures (i.e. collagen layers) of teleost scales and fish fins. -
From the Lower Permian of Eastern Europe
Paleontological Research, vol. 9, no. 1, pp. 79–84, April 30, 2005 6 by the Palaeontological Society of Japan A new genus of the family Amblypteridae (Osteichthyes: Actinopterygii) from the Lower Permian of Eastern Europe ARTE´ M M. PROKOFIEV Department of Fishes and Fish-like Vertebrates, Paleontological Institute – PIN, Russian Academy of Sciences, Profsoyuznaya Street, 123, Moscow 117997, Russia (e-mail: [email protected]) Received February 14, 2002; Revised manuscript accepted February 22, 2005 Abstract. A new genus and species of the family Amblypteridae, Tchekardichthys sharovi,fromthe Lower Permian of Eastern Europe (Perm Region of Russia) is described. It can be distinguished from all the known members of the family in the position of the fins and number of fin rays, characters of scalation and cranial roofing bones ornamentation, etc. The newly described taxon apparently lived in estuarine or brackish-water habitats. Key words: actinopterygians, Amblypteridae, Eastern Europe, Lower Permian, new genus and species The elonichthyiform family Amblypteridae is rep- second is situated at the mouth of the Tchekarda resented by five genera and numerous species from River and immediately downstream of the latter, and the Carboniferous to Lower Permian of France, Ger- the third one is situated on the left bank of the Sylva many, Czech Republic, India (Kashmir) and South River 850 m downstream from the mouth of the America, and from the Upper Permian of the Ural Tchekarda River. The specimens described herein are region in Eastern Europe (Agassiz, 1833–1844; Berg, found in the second site. The Tchekarda layers belong 1940; Dunkle and Schaeffer, 1956; Berg et al., 1964; to the Koshelevskaya Formation of the Irenskian Re- Heyler, 1969, 1976, 1997; Beltan, 1978). -
Lombardy 2012 Part A
Pan-European Correlation of the Triassic 9th International Field Workshop September 1-5, 2012 The Middle-Late Triassic of Lombardy (I) and Canton Ticino (CH) By Flavio Jadoul and Andrea Tintori 2 This Field Trip had support from: Convenzione dei Comuni italiani del Monte San Giorgio/UNESCO Fondazione UNESCO- Monte San Giorgio Svizzera Comunità Montana della Valsassina, Valvarrone, Val d’Esino e Riviera Parco Regionale della Grigna Settentrionale 3 September 2, first day by Andrea Tintori and Markus Felber MONTE SAN GIORGIO IS UNESCO WORLD HERITAGE SITE Monte San Giorgio is among the most important fossil-bearing sites in the world, in particular concerning the middle Triassic fauna (245-230 million years ago). Following the UNESCO inscription of the Swiss side of the mountain in 2003, the Italian side has been inscribed in 2010, stating that: “Monte San Giorgio is the only and best known evidence of the marine Triassic life but also preserves some important remains of terrestrial organisms. The numerous and diverse fossil finds are exceptionally preserved and complete. The long history of the research and the controlled management of the paleontological resources have allowed thorough studies and the classification of exceptional specimens which are the basis for a rich scientific paper production. For all these reasons Monte San Giorgio represents the main reference in the world concerning the Triassic faunas.” 4 THE GEOLOGICAL HISTORY OF MONTE SAN GIORGIO Monte San Giorgio belongs to the broad tectonic feature named Sudalpino , which encompasses all the rock formations lying South of the Insubric Line. The oldest rocks of Monte San Giorgio outcrop in spots along the shores of the Ceresio Lake, between the Brusino Arsizio custom house and the built-up area of Porto Ceresio. -
Osteichthyes, Actinopterygii) from the Early Triassic of Northwestern Madagascar
Rivista Italiana di Paleontologia e Stratigrafia (Research in Paleontology and Stratigraphy) vol. 123(2): 219-242. July 2017 REDESCRIPTION OF ‘PERLEIDUS’ (OSTEICHTHYES, ACTINOPTERYGII) FROM THE EARLY TRIASSIC OF NORTHWESTERN MADAGASCAR GIUSEPPE MARRAMÀ1*, CRISTINA LOMBARDO2, ANDREA TINTORI2 & GIORGIO CARNEVALE3 1*Corresponding author. Department of Paleontology, University of Vienna, Geozentrum, Althanstrasse 14, 1090 Vienna, Austria. E-mail: [email protected] 2Dipartimento di Scienze della Terra, Università degli Studi di Milano, Via Mangiagalli 34, I-20133 Milano, Italy. E-mail: cristina.lombardo@ unimi.it; [email protected] 3Dipartimento di Scienze della Terra, Università degli Studi di Torino, Via Valperga Caluso 35, I-10125 Torino, Italy. E-mail: giorgio.carnevale@ unito.it To cite this article: Marramà G., Lombardo C., Tintori A. & Carnevale G. (2017) - Redescription of ‘Perleidus’ (Osteichthyes, Actinopterygii) from the Early Triassic of northwestern Madagascar . Riv. It. Paleontol. Strat., 123(2): 219-242. Keywords: Teffichthys gen. n.; TEFF; Ankitokazo basin; geometric morphometrics; intraspecific variation; basal actinopterygians. Abstract. The revision of the material from the Lower Triassic fossil-bearing-nodule levels from northwe- stern Madagascar supports the assumption that the genus Perleidus De Alessandri, 1910 is not present in the Early Triassic. In the past, the presence of this genus has been reported in the Early Triassic of Angola, Canada, China, Greenland, Madagascar and Spitsbergen. More recently, it has been pointed out that these taxa may not be ascri- bed to Perleidus owing to several anatomical differences. The morphometric, meristic and morphological analyses revealed a remarkable ontogenetic and individual intraspecific variation among dozens of specimens from the lower Triassic of Ankitokazo basin, northwestern Madagascar and allowed to consider the two Malagasyan species P. -
Upper Triassic) of Guizhou, South China
Research Advances A New Discovery of Colobodus Agassiz, 1844 (Colobodontidae) from the Carnian (Upper Triassic) of Guizhou, South China LI Ji1,*, LUO Yongming2, WANG Yue1, XU Guangfu1, MA Zhiheng1,3 1 College of Resource and Environmental Engineering, Guizhou University, Guiyang 550025, China 2 Geological Survey of Guizhou, Guiyang 550004, China 3.Chongqing Institute of Geology and Mineral Resources, Chongqing 400042, China Corresponding author E-mail: [email protected] Objective Palaeoichthyology has been identified a research hotspot since abundant Triassic ichthyolite was discovered in Monte San Giorgio and South China. Critical review of the Colobodontidae reveals that this family has important research value. Furthermore, the family Perleididae Brough, 1931 and the probably paraphyletic ‘Perleidus group’ Gardiner & Schaeffer, 1989 have been implicitly regarded a synonym of the unsatisfactorily defined family Colobodontidae. Until 2002, Colobodontidae had been universally accepted as a significant taxon among all Triassic ichthyolite. However, the most colobodontids are probably confined to the Anisian and Ladinian in the Western Tethys. A well-preserved colobodontid discovered in Guizhou, South China, throws new light on its distribution and stratigraphic range. Methods A specimen was collected at the Wusha village of Xingyi City, Guizhou Province, South China and is preserved in the Geological Museum of Guizhou Province. The repair work was completed in a physical way in the laboratory of the Department of Geology, Guizhou University. Photographing the specimen was done by a 3D Microscope VHX-100k and drawings were made with reference to the digital photographs. Results This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record.