Bacterial Endosymbioses in Marine Littoral Worms Introduction
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Phylogenetic Diversity of Bacterial Endosymbionts in the Gutless Marine Oligochete Olaviusloisae (Annelida)
MARINE ECOLOGY PROGRESS SERIES Vol. 178: 271-280.1999 Published March 17 Mar Ecol Prog Ser l Phylogenetic diversity of bacterial endosymbionts in the gutless marine oligochete Olavius loisae (Annelida) Nicole ~ubilier'~*,Rudolf ~mann',Christer Erseus2, Gerard Muyzer l, SueYong park3, Olav Giere4, Colleen M. cavanaugh3 'Molecular Ecology Group, Max Planck Institute of Marine Microbiology, Celsiusstr. 1. D-28359 Bremen, Germany 'Department of Invertebrate Zoology. Swedish Museum of Natural History. S-104 05 Stockholm. Sweden 3~epartmentof Organismic and Evolutionary Biology, Harvard University, The Biological Laboratories, Cambridge, Massachusetts 02138, USA 4Zoologisches Institut und Zoologisches Museum. University of Hamburg, D-20146 Hamburg, Germany ABSTRACT: Endosymbiotic associations with more than 1 bacterial phylotype are rare anlong chemoautotrophic hosts. In gutless marine oligochetes 2 morphotypes of bacterial endosymbionts occur just below the cuticle between extensions of the epidermal cells. Using phylogenetic analysis, in situ hybridization, and denaturing gradient gel electrophoresis based on 16s ribosomal RNA genes, it is shown that in the gutless oligochete Olavius Ioisae, the 2 bacterial morphotypes correspond to 2 species of diverse phylogenetic origin. The larger symbiont belongs to the gamma subclass of the Proteobac- tend and clusters with other previously described chemoautotrophic endosymbionts. The smaller syrnbiont represents a novel phylotype within the alpha subclass of the Proteobacteria. This is distinctly cllfferent from all other chemoautotropl-uc hosts with symbiotic bacteria which belong to either the gamma or epsilon Proteobacteria. In addition, a third bacterial morphotype as well as a third unique phylotype belonging to the spirochetes was discovered in these hosts. Such a phylogenetically diverse assemblage of endosymbiotic bacteria is not known from other marine invertebrates. -
Bellec Et Al.5)
Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, Lucile Durand, Nicolas Gayet, Daniela Zeppilli To cite this version: Laure Bellec, Marie-Anne Cambon Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, et al.. Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. Scientific Reports, Nature Publishing Group, 2019, 9 (1), 10.1038/s41598-019-43517-8. hal-02265357 HAL Id: hal-02265357 https://hal.archives-ouvertes.fr/hal-02265357 Submitted on 9 Aug 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. www.nature.com/scientificreports OPEN Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Received: 30 October 2018 Laure Bellec1,2,3,4, Marie-Anne Cambon Bonavita2,3,4, Stéphane Hourdez5,6, Mohamed Jebbar 3,4, Accepted: 2 April 2019 Aurélie Tasiemski 7, Lucile Durand2,3,4, Nicolas Gayet1 & Daniela Zeppilli1 Published: xx xx xxxx Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. -
Phylogenetic and Functional Characterization of Symbiotic Bacteria in Gutless Marine Worms (Annelida, Oligochaeta)
Phylogenetic and functional characterization of symbiotic bacteria in gutless marine worms (Annelida, Oligochaeta) Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften -Dr. rer. nat.- dem Fachbereich Biologie/Chemie der Universität Bremen vorgelegt von Anna Blazejak Oktober 2005 Die vorliegende Arbeit wurde in der Zeit vom März 2002 bis Oktober 2005 am Max-Planck-Institut für Marine Mikrobiologie in Bremen angefertigt. 1. Gutachter: Prof. Dr. Rudolf Amann 2. Gutachter: Prof. Dr. Ulrich Fischer Tag des Promotionskolloquiums: 22. November 2005 Contents Summary ………………………………………………………………………………….… 1 Zusammenfassung ………………………………………………………………………… 2 Part I: Combined Presentation of Results A Introduction .…………………………………………………………………… 4 1 Definition and characteristics of symbiosis ...……………………………………. 4 2 Chemoautotrophic symbioses ..…………………………………………………… 6 2.1 Habitats of chemoautotrophic symbioses .………………………………… 8 2.2 Diversity of hosts harboring chemoautotrophic bacteria ………………… 10 2.2.1 Phylogenetic diversity of chemoautotrophic symbionts …………… 11 3 Symbiotic associations in gutless oligochaetes ………………………………… 13 3.1 Biogeography and phylogeny of the hosts …..……………………………. 13 3.2 The environment …..…………………………………………………………. 14 3.3 Structure of the symbiosis ………..…………………………………………. 16 3.4 Transmission of the symbionts ………..……………………………………. 18 3.5 Molecular characterization of the symbionts …..………………………….. 19 3.6 Function of the symbionts in gutless oligochaetes ..…..…………………. 20 4 Goals of this thesis …….………………………………………………………….. -
Envall Et Al
Molecular Phylogenetics and Evolution 40 (2006) 570–584 www.elsevier.com/locate/ympev Molecular evidence for the non-monophyletic status of Naidinae (Annelida, Clitellata, TubiWcidae) Ida Envall a,b,c,¤, Mari Källersjö c, Christer Erséus d a Department of Zoology, Stockholm University, SE-106 91 Stockholm, Sweden b Department of Invertebrate Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden c Laboratory of Molecular Systematics, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden d Department of Zoology, Göteborg University, Box 463, SE-405 30 Göteborg, Sweden Received 24 October 2005; revised 9 February 2006; accepted 15 March 2006 Available online 8 May 2006 Abstract Naidinae (former Naididae) is a group of small aquatic clitellate annelids, common worldwide. In this study, we evaluated the phylo- genetic status of Naidinae, and examined the phylogenetic relationships within the group. Sequence data from two mitochondrial genes (12S rDNA and 16S rDNA), and one nuclear gene (18S rDNA), were used. Sequences were obtained from 27 naidine species, 24 species from the other tubiWcid subfamilies, and Wve outgroup taxa. New sequences (in all 108) as well as GenBank data were used. The data were analysed by parsimony and Bayesian inference. The tree topologies emanating from the diVerent analyses are congruent to a great extent. Naidinae is not found to be monophyletic. The naidine genus Pristina appears to be a derived group within a clade consisting of several genera (Ainudrilus, Epirodrilus, Monopylephorus, and Rhyacodrilus) from another tubiWcid subfamily, Rhyacodrilinae. These results dem- onstrate the need for a taxonomic revision: either Ainudrilus, Epirodrilus, Monopylephorus, and Rhyacodrilus should be included within Naidinae, or Pristina should be excluded from this subfamily. -
A Test of Monophyly of the Gutless Phallodrilinae (Oligochaeta
A test of monophyly of the gutless Phallodrilinae (Oligochaeta, Tubificidae) and the use of a 573-bp region of the mitochondrial cytochrome oxidase I gene in analysis of annelid phylogeny JOHAN A. A. NYLANDER,CHRISTER ERSEÂ US &MARI KAÈ LLERSJOÈ Accepted 7 Setember 1998 Nylander, J. A. A., ErseÂus, C. & KaÈllersjoÈ , M. (1999) A test of monophyly of the gutless Phallodrilinae (Oligochaeta, Tubificidae) and the use of a 573 bp region of the mitochondrial cytochrome oxidase I sequences in analysis of annelid phylogeny. Ð Zoologica Scripta 28, 305±313. A 573-bp region of the mitochondrial gene cytochrome c oxidase subunit I (COI) of two species of Inanidrilus ErseÂus and four species of Olavius ErseÂus (Phallodrilinae, Tubificidae) is used in a parsimony analysis together with a selection of 35 other annelids (including members of Polychaeta, Pogonophora, Aphanoneura, and the clitellate taxa Tubificidae, Enchytraeidae, Naididae, Lumbriculidae, Haplotaxidae, Lumbricidae, Criodrilidae, Branchiobdellida and Hirudinea), and with two molluscs as outgroups. The data support the monophyly of the Olavius and Inanidrilus group, with a monophyletic Inanidrilus. However, parsimony jackknife analyses show that most of the other groups are unsupported by the data set, thus revealing a large amount of homoplasy in the selected gene region. Practically no information is given of within/between family relationships except for a few, closely related species. This suggests that the analysed COI region is not useful, when used alone, for inferring higher level relationships among the annelids. Johan A. A. Nylander, Department of Systematic Zoology, Evolutionary Biology Center, Uppsala University, NorbyvaÈgen 18D, SE-752 36 Uppsala, Sweden. Christer ErseÂus, Department of Invertebrate Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden. -
Phylogeny of 16S Rrna, Ribulose 1,5-Bisphosphate Carboxylase
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Aug. 2006, p. 5527–5536 Vol. 72, No. 8 0099-2240/06/$08.00ϩ0 doi:10.1128/AEM.02441-05 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Phylogeny of 16S rRNA, Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase, and Adenosine 5Ј-Phosphosulfate Reductase Genes from Gamma- and Alphaproteobacterial Symbionts in Gutless Marine Worms (Oligochaeta) from Bermuda and the Bahamas Anna Blazejak,1 Jan Kuever,1† Christer Erse´us,2 Rudolf Amann,1 and Nicole Dubilier1* Max Planck Institute of Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany,1 and Department of Zoology, Go¨teborg University, Box 463, SE-405 30 Go¨teborg, Sweden2 Received 16 October 2005/Accepted 17 April 2006 Gutless oligochaetes are small marine worms that live in obligate associations with bacterial endosymbionts. While symbionts from several host species belonging to the genus Olavius have been described, little is known of the symbionts from the host genus Inanidrilus. In this study, the diversity of bacterial endosymbionts in Inanidrilus leukodermatus from Bermuda and Inanidrilus makropetalos from the Bahamas was investigated using comparative sequence analysis of the 16S rRNA gene and fluorescence in situ hybridization. As in all other gutless oligochaetes examined to date, I. leukodermatus and I. makropetalos harbor large, oval bacteria identified as Gamma 1 symbionts. The presence of genes coding for ribulose-1,5-bisphosphate carboxylase/oxygenase form I (cbbL) and adenosine 5-phosphosulfate reductase (aprA) supports earlier studies indicating that these symbionts are chemoautotrophic sulfur oxidizers. Alphaproteobacteria, previously identified only in the gutless oligochaete Olavius loisae from the southwest Pacific Ocean, coexist with the Gamma 1 symbionts in both I. -
CURRICULUM VITAE NICOLE DUBILIER Address Max-Planck
CURRICULUM VITAE NICOLE DUBILIER Address Max-Planck-Institute for Marine Microbiology (MPI-MM) Celsiusstr. 1, D-28359 Bremen Tel. +49 421 2028-932 email: [email protected] Academic Training 1985 University of Hamburg Zoology, Biochemistry, Diplom Microbiology 1992 University of Hamburg Marine Biology PhD Dissertation Title: Adaptations of the Marine Oligochaete Tubificoides benedii to Sulfide-rich Sediments: Results from Ecophysiological and Morphological Studies. Current Position Director of the Max Planck Institute for Marine Microbiology (MPI-MM) Head of the Symbiosis Department at the MPI-MM (W3 position) Professor for Microbial Symbiosis at the University of Bremen, Germany Academic Positions Since 2013 Director of the Symbiosis Department at the MPI-MM (W3 position) Since 2012 Professor for Microbial Symbiosis at the University of Bremen, Germany Since 2012 Affiliate Professor at MARUM, University of Bremen 2007 - 2013 Head of the Symbiosis Group at the MPI-MM (W2 position) 2002 - 2006 Coordinator of the International Max Planck Research School of Marine Microbiology 2004 - 2005 Invited Visiting Professor at the University of Pierre and Marie Curie, Paris, France (2 months) 2001 - 2006 Research Associate in the Department of Molecular Ecology at the MPI-MM 1998 - 2001 Postdoctoral Fellow at the MPI-MM in the DFG Project: "Evolution of symbioses between chemoautotrophic bacteria and gutless marine worms" 1997 Parental leave 1995 - 1996 Research Assistant at the University of Hamburg in the BMBF project: "Hydrothermal fluid development and material balance in the North Fiji Basin" 1993 - 1995 Postdoctoral Fellow in the laboratory of Dr. Colleen Cavanaugh, Harvard University, MA, USA in the NSF project "Biogeography of chemoautotrophic symbioses in marine oligochaetes" 1990 - 1993 Research Assistant at the University of Hamburg in the EU project 0044: Sulphide- and methane-based ecosystems. -
Chemosynthetic Ectosymbionts Associated with a Shallow-Water
www.nature.com/scientificreports OPEN Chemosynthetic ectosymbionts associated with a shallow-water marine nematode Received: 30 October 2018 Laure Bellec1,2,3,4, Marie-Anne Cambon Bonavita2,3,4, Stéphane Hourdez5,6, Mohamed Jebbar 3,4, Accepted: 2 April 2019 Aurélie Tasiemski 7, Lucile Durand2,3,4, Nicolas Gayet1 & Daniela Zeppilli1 Published: xx xx xxxx Prokaryotes and free-living nematodes are both very abundant and co-occur in marine environments, but little is known about their possible association. Our objective was to characterize the microbiome of a neglected but ecologically important group of free-living benthic nematodes of the Oncholaimidae family. We used a multi-approach study based on microscopic observations (Scanning Electron Microscopy and Fluorescence In Situ Hybridization) coupled with an assessment of molecular diversity using metabarcoding based on the 16S rRNA gene. All investigated free-living marine nematode specimens harboured distinct microbial communities (from the surrounding water and sediment and through the seasons) with ectosymbiosis seemed more abundant during summer. Microscopic observations distinguished two main morphotypes of bacteria (rod-shaped and flamentous) on the cuticle of these nematodes, which seemed to be afliated to Campylobacterota and Gammaproteobacteria, respectively. Both ectosymbionts belonged to clades of bacteria usually associated with invertebrates from deep-sea hydrothermal vents. The presence of the AprA gene involved in sulfur metabolism suggested a potential for chemosynthesis in the nematode microbial community. The discovery of potential symbiotic associations of a shallow-water organism with taxa usually associated with deep-sea hydrothermal vents, is new for Nematoda, opening new avenues for the study of ecology and bacterial relationships with meiofauna. -
Hoffman Dissertation.Pdf
Determining the spatial and seasonal influences of microbial community composition and structure from the Hawaiian anchialine ecosystem by Stephanie Kimie Hoffman A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama December 10, 2016 Keywords: anchialine, microbial ecology, Hawaii, laminated mat, spatial variation, seasonal variation Copyright 2016 by Stephanie Kimie Hoffman Approved by Scott R Santos, Chair, Professor of Biological Sciences Mark R Liles, Professor of Biological Sciences Todd D Steury, Associate Professor of Wildlife Sciences Robert S Boyd, Professor and Undergraduate Program Officer of Biological Sciences Abstract Characterized as coastal bodies of water lacking surface connections to the ocean but with subterranean connections to the ocean and groundwater, habitats belonging to the anchialine ecosystem occur worldwide in primarily tropical latitudes. Such habitats contain tidally fluctuating complex physical and chemical clines and great species richness and endemism. The Hawaiian Archipelago hosts the greatest concentration of anchialine habitats globally, and while the endemic atyid shrimp and keystone grazer Halocaridina rubra has been studied, little work has been conducted on the microbial communities forming the basis of this ecosystem’s food web. Thus, this dissertation seeks to fill the knowledge gap regarding the endemic microbial communities in the Hawaiian anchialine ecosystem, particularly regarding spatial and seasonal influences on community diversity, composition, and structure. Briefly, Chapter 1 introduces the anchialine ecosystem and specific aims of this dissertation. In Chapter 2, environmental factors driving diversity and spatial variation among Hawaiian anchialine microbial communities are explored. Specifically, each sampled habitat was influenced by a unique combination of environmental factors that correlated with correspondingly unique microbial communities. -
The Isthmus of Panama for the Study of Microbial Symbiosis: WHAT CAN WE LEARN from COMPARATIVE ANALYSIS of HOST-ASSOCIATED MICROBIOMES ACROSS TWO OCEANS?
The Isthmus of Panama for the study of microbial symbiosis: WHAT CAN WE LEARN FROM COMPARATIVE ANALYSIS OF HOST-ASSOCIATED MICROBIOMES ACROSS TWO OCEANS? DECEMBER 2019 Smithsonian Tropical Research Institute | Panamá Workshop funding generously provided, in part, by the Smithsonian Office of the Provost’s One Smithsonian Symposia Program and the Gordon and Betty Moore Foundation. 1 2 This workshop aims to summarize the remarkable opportunities that the Isthmus of Panama presents for understanding the evolution of microbial symbiosis in the sea. Marine organisms and their microbial symbionts that were once able to move freely in a nutrient-rich sea gradually became physically isolated when the Isthmus formed and finally closed ~3 million years ago. The land mass progressively blocked oceanic currents causing the Caribbean to become oligotrophic while the Eastern Pacific remained rich in nutrients. Animal hosts and their associated microbiome followed separate evolutionary trajectories and adapted to contrasting environments. Today’s Caribbean and Eastern Pacific marine ecosystems of Panama and Central America are home to hundreds of sister species from all major taxonomic groups that emerged through transisthmian vicariance. Much of the marine research at STRI in the last 50 years has taken advantage of these parallel events of divergence (replicated evolution) to understand evolutionary mechanisms, behaviors and physiological processes that drive reproductive isolation and adaptation in marine animals. With the support of the Gordon and Betty Moore Foundation, STRI is now expanding this research to the microbial symbionts. 3 During last year’s workshop (3-8 December 2018, Bocas del Toro) we discussed the importance of microbial symbiosis for the functioning of ocean ecosystems and we listed questions that could be answered by expanding the phylogenetic and ecological breath of host-microbiome studies. -
Phylogenetic Confirmation of the Genus Robbea
Systematics and Biodiversity (2014), 12(4): 434À455 Research Article Phylogenetic confirmation of the genus Robbea (Nematoda: Desmodoridae, Stilbonematinae) with the description of three new species JORG€ A. OTT1, HARALD R. GRUBER-VODICKA2, NIKOLAUS LEISCH3 & JUDITH ZIMMERMANN2 1Department of Limnology and Biooceanography, University of Vienna, Althanstr. 14, A-1090 Vienna, Austria 2Department of Symbiosis, Max Planck Institute for Marine Microbiology, Celsiusstr. 1, D-28359 Bremen, Germany 3Department of Ecogenomics and System Biology, University of Vienna, Althanstr. 14, A-1090 Vienna, Austria (Received 13 February 2014; accepted 12 June 2014; first published online 4 September 2014) The Stilbonematinae are a monophyletic group of marine nematodes that are characterized by a coat of thiotrophic bacterial symbionts. Among the ten known genera of the Stilbonematinae, the genus Robbea GERLACH 1956 had a problematic taxonomic history of synonymizations and indications of polyphyletic origin. Here we describe three new species of the genus, R. hypermnestra sp. nov., R. ruetzleri sp. nov. and R. agricola sp. nov., using conventional light microscopy, interference contrast microscopy and SEM. We provide 18S rRNA gene sequences of all three species, together with new sequences for the genera Catanema and Leptonemella. Both our morphological analyses as well as our phylogenetic reconstructions corroborate the genus Robbea. In our phylogenetic analysis the three species of the genus Robbea form a distinct clade in the Stilbonematinae radiation and are clearly separated from the clade of the genus Catanema, which has previously been synonymized with Robbea. Surprisingly, in R. hypermnestra sp. nov. all females are intersexes exhibiting male sexual characters. Our extended dataset of Stilbonematinae 18S rRNA genes for the first time allows the identification of the different genera, e.g. -
Phylogeny of 16S Rrna, Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase, and Adenosine 5Ј-Phosphosulfate Reductase Genes from Gamma
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Aug. 2006, p. 5527–5536 Vol. 72, No. 8 0099-2240/06/$08.00ϩ0 doi:10.1128/AEM.02441-05 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Phylogeny of 16S rRNA, Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase, and Adenosine 5Ј-Phosphosulfate Reductase Genes from Gamma- and Alphaproteobacterial Symbionts in Gutless Marine Worms Downloaded from (Oligochaeta) from Bermuda and the Bahamas Anna Blazejak,1 Jan Kuever,1† Christer Erse´us,2 Rudolf Amann,1 and Nicole Dubilier1* Max Planck Institute of Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany,1 and Department of Zoology, Go¨teborg University, Box 463, SE-405 30 Go¨teborg, Sweden2 Received 16 October 2005/Accepted 17 April 2006 Gutless oligochaetes are small marine worms that live in obligate associations with bacterial endosymbionts. http://aem.asm.org/ While symbionts from several host species belonging to the genus Olavius have been described, little is known of the symbionts from the host genus Inanidrilus. In this study, the diversity of bacterial endosymbionts in Inanidrilus leukodermatus from Bermuda and Inanidrilus makropetalos from the Bahamas was investigated using comparative sequence analysis of the 16S rRNA gene and fluorescence in situ hybridization. As in all other gutless oligochaetes examined to date, I. leukodermatus and I. makropetalos harbor large, oval bacteria identified as Gamma 1 symbionts. The presence of genes coding for ribulose-1,5-bisphosphate carboxylase/oxygenase form I (cbbL) and adenosine 5-phosphosulfate reductase (aprA) supports earlier studies indicating that these symbionts are chemoautotrophic sulfur oxidizers. Alphaproteobacteria, previously identified only in the gutless oligochaete Olavius loisae from the southwest Pacific Ocean, coexist with the Gamma 1 symbionts in both I.