Evolutionary Stasis of the Pseudoautosomal Boundary
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SUSANNE BRUNKHORST, D V M (B)(6), (B)(7)(C)
SBRUNKHORST United States Department of Agriculture Animal and Plant Health Inspection Service 2016082567931581 Insp_id Inspection Report University Of Tennesee - Chattanooga Customer ID: 29 975 East Third St. Certificate: 63-R-0001 Box 339 Site: 001 College Of Medicine COLLEGE OF MEDICINE Chattanooga, TN 37403 Type: ROUTINE INSPECTION Date: 20-SEP-2016 No non-compliant items identified during this inspection. This inspection and exit interview were conducted with undersigned facility representative. SUSANNE BRUNKHORST, D V M Prepared By: Date: SUSANNE BRUNKHORST USDA, APHIS, Animal Care 20-SEP-2016 Title: VETERINARY MEDICAL OFFICER 1076 Received By: (b)(6), (b)(7)(c) Date: Title: FACILITY REPRESENTATIVE 20-SEP-2016 Page 1 of 1 United States Department of Agriculture Customer: 29 Animal and Plant Health Inspection Service Inspection Date: 20-SEP-16 Animal Inspected at Last Inspection Cust No Cert No Site Site Name Inspection 29 63-R-0001 001 UNIVERSITY OF TENNESEE - 20-SEP-16 CHATTANOOGA Count Species 000000 None 000000 Total United States Department of Agriculture Customer: 29 Animal and Plant Health Inspection Service Inspection Date: 24-AUG-15 Animal Inspected at Last Inspection Cust No Cert No Site Site Name Inspection 29 63-R-0001 001 UNIVERSITY OF TENNESEE - 24-AUG-15 CHATTANOOGA Count Species 000000 None 000000 Total United States Department of Agriculture Customer: 851 Animal and Plant Health Inspection Service Inspection Date: 04-FEB-16 Animal Inspected at Last Inspection Cust No Cert No Site Site Name Inspection 851 63-R-0002 -
The Taxonomy of Primates in the Laboratory Context
P0800261_01 7/14/05 8:00 AM Page 3 C HAPTER 1 The Taxonomy of Primates T HE T in the Laboratory Context AXONOMY OF P Colin Groves RIMATES School of Archaeology and Anthropology, Australian National University, Canberra, ACT 0200, Australia 3 What are species? D Taxonomy: EFINITION OF THE The biological Organizing nature species concept Taxonomy means classifying organisms. It is nowadays commonly used as a synonym for systematics, though Disagreement as to what precisely constitutes a species P strictly speaking systematics is a much broader sphere is to be expected, given that the concept serves so many RIMATE of interest – interrelationships, and biodiversity. At the functions (Vane-Wright, 1992). We may be interested basis of taxonomy lies that much-debated concept, the in classification as such, or in the evolutionary implica- species. tions of species; in the theory of species, or in simply M ODEL Because there is so much misunderstanding about how to recognize them; or in their reproductive, phys- what a species is, it is necessary to give some space to iological, or husbandry status. discussion of the concept. The importance of what we Most non-specialists probably have some vague mean by the word “species” goes way beyond taxonomy idea that species are defined by not interbreeding with as such: it affects such diverse fields as genetics, biogeog- each other; usually, that hybrids between different species raphy, population biology, ecology, ethology, and bio- are sterile, or that they are incapable of hybridizing at diversity; in an era in which threats to the natural all. Such an impression ultimately derives from the def- world and its biodiversity are accelerating, it affects inition by Mayr (1940), whereby species are “groups of conservation strategies (Rojas, 1992). -
NO2N Import Into Containment Any New Organism That Is Not Genetically Modified
NO2N Import into containment any new organism that is not genetically modified Application title: Importation of specified “new” mammal species into containment at Wellington Zoo, and other zoos, to aid conservation though sustainable display, captive breeding and / or the conservation of genetic material Applicant organisation: Wellington Zoo Trust, 200 Daniell Street, Newtown, Wellington Please provide a brief summary of the purpose of the application (255 characters or less, including spaces) To import into containment 28 mammal species for captive breeding, display, educational presentations and to contribute to conservation by exposing visitors to conservation issues and the conservation of genetic material through breeding PLEASE CONTACT ERMA NEW ZEALAND BEFORE SUBMITTING YOUR APPLICATION Please clearly identify any confidential information and attach as a separate appendix. Please check and complete the following before submitting your application: All sections completed Yes Appendices enclosed NA Confidential information identified and enclosed separately NA Copies of references attached Yes Application signed and dated Yes Electronic copy of application e-mailed to Yes ERMA New Zealand Signed: Date: 20 Customhouse Quay Cnr Waring Taylor and Customhouse Quay PO Box 131, Wellington Phone: 04 916 2426 Fax: 04 914 0433 Email: [email protected] Website: www.ermanz.govt.nz NO2N: Application to import into containment any new organism that is not genetically modified Section One – Applicant details Name and details of the organisation -
Instability of the Pseudoautosomal Boundary in House Mice
Genetics: Early Online, published on April 26, 2019 as 10.1534/genetics.119.302232 Article/Investigation Instability of the pseudoautosomal boundary in house mice Andrew P Morgan∗, Timothy A Bell∗, James J Crowley∗; y; z, and Fernando Pardo-Manuel de Villena∗ ∗Department of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC yDepartment of Psychiatry, University of North Carolina, Chapel Hill, NC zDepartment of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden April 26, 2019 Corresponding authors: Andrew P Morgan ([email protected]) Fernando Pardo-Manuel de Villena ([email protected]) 5049C Genetic Medicine Building Department of Genetics University of North Carolina Chapel Hill NC 27599-7264 Keywords: meiosis, recombination, pseudoautosomal region, sex chromosome evolution 1 Copyright 2019. Abstract Faithful segregation of homologous chromosomes at meiosis requires pairing and recombination. In taxa with dimorphic sex chromosomes, pairing between them in the heterogametic sex is limited to a narrow inter- val of residual sequence homology known as the pseudoautosomal region (PAR). Failure to form the obligate crossover in the PAR is associated with male infertility in house mice (Mus musculus) and humans. Yet despite this apparent functional constraint, the boundary and organization of the PAR is highly variable in mammals, and even between subspecies of mice. Here we estimate the genetic map in a previously-documented ex- pansion of the PAR in the Mus musculus castaneus subspecies and show that the local recombination rate is 100-fold higher than the autosomal background. We identify an independent shift in the PAR boundary in the Mus musculus musculus subspecies and show that it involves a complex rearrangement but still recombines in heterozygous males. -
Veterinary Opposition to the Keeping of Primates As Pets
Veterinary Opposition to the Keeping of Primates as Pets Introduction: The Humane Society Veterinary Medical Association opposes the private ownership of dangerous and exotic animals. That includes the keeping of primates as pets, since this practice poses a risk to public safety and public health. It is also harmful to the welfare of the primates in question and weakens conservation efforts undertaken to protect their wild counterparts from extinction. The following document describes the compelling case for phasing out the practice of keeping primates as pets, as the majority of states have already done. Primates pose a risk to public safety. Primates are wild animals who have not been – and should not be – domesticated. Given their profound intelligence and behavioral complexity, they are inherently unpredictable, even to primatologists and other experts. Even the smallest monkey species are incredibly strong and can inflict serious injuries with their teeth or nails, including puncture wounds, severe lacerations, and infections. Attacks by apes are frequently disfiguring and can be fatal. Purchased as cute and manageable infants, primates inevitably become aggressive, destructive, and territorial as they mature, often attacking their owners or other people, escaping cages, and causing damage to household items and property. These dangerous and unwanted behaviors are the natural result of forcing these animals to live in environments that are inappropriate physically, psychologically, or socially. When their living conditions fail to permit acceptable outlets for natural behaviors, the result is horror stories that frequently appear on the evening news. Although it is likely that most incidents go unreported, records show that since 1990, more than 300 people— including 105 children—have been injured by captive primates in the United States.1 Some of these attacks have caused permanent disability and disfigurement. -
Evolutionary Stasis of the Pseudoautosomal Boundary In
Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates Rylan Shearn, Alison E Wright, Sylvain Mousset, Corinne Régis, Simon Penel, Jean-François Lemaître, Guillaume Douay, Brigitte Crouau-Roy, Emilie Lecompte, Gabriel Ab Marais To cite this version: Rylan Shearn, Alison E Wright, Sylvain Mousset, Corinne Régis, Simon Penel, et al.. Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates. eLife, eLife Sciences Publication, 2020, 9, 10.7554/eLife.63650. hal-03064964 HAL Id: hal-03064964 https://hal.archives-ouvertes.fr/hal-03064964 Submitted on 14 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. SHORT REPORT Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates Rylan Shearn1, Alison E Wright2, Sylvain Mousset1,3, Corinne Re´ gis1, Simon Penel1, Jean-Franc¸ois Lemaitre1, Guillaume Douay4, Brigitte Crouau-Roy5, Emilie Lecompte5, Gabriel AB Marais1,6* 1Laboratoire Biome´trie et Biologie Evolutive, CNRS / Univ. Lyon 1, Villeurbanne, France; 2Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom; 3Faculty of Mathematics, University of Vienna, Vienna, Austria; 4Zoo de Lyon, Lyon, France; 5Laboratoire Evolution et Diversite´ Biologique, CNRS / Univ. Toulouse, Toulouse, France; 6LEAF-Linking Landscape, Environment, Agriculture and Food Dept, Instituto Superior de Agronomia, Universidade de Lisboa, Lisbon, Portugal Abstract Sex chromosomes are typically comprised of a non-recombining region and a recombining pseudoautosomal region. -
Supplementary Materials For
Supplementary Materials for Contrasted sex chromosome evolution in primates with and without sexual dimorphism Rylan Shearn, Emilie Lecompte, Corinne Régis, Sylvain Mousset, Simon Penel, Guillaume Douay, Brigitte Crouau-Roy, Gabriel A.B. Marais Correspondence to: [email protected] This PDF file includes: Supplementary Text S1 to S2 Figs. S1 to S2 Tables S1 1 Supplementary Text Text S1: Regions of the strepsirrhine X chromosomes with unusual male:female coverage ratio In Fig. 1, both lemur X chromosomes exhibit regions with male:female coverage ratio close to 1 (shown in grey) in their X-specific parts, where a ratio of 0.5 is expected. The gray mouse lemur has five such regions, the northern greater galago three. The dot plots of the lemur and the human X chromosomes (see Fig. 1 and S1) clearly show that little or no homologous genes are found in those regions, which suggest that they may be homologous to other human chromosomes. This would be consistent with the male:female coverage ratio of 1, typical of autosmal regions, that we found for these regions. To explore this possibility, we extracted the sequences of those regions and performed a tblastn against all the human proteins (human genome version GRCh38). In case of isoforms, the longest protein was kept so that a human gene was present only once. We then filtered the tblastn results by keeping only hits with >80% similarity (based on average nucleotide divergence between lemurs and humans) and e-value < 10-9. From those, we kept human proteins covered by hits to >80% using SiLix (Miele, Penel, & Duret, 2011). -
An Expanded Search for Simian Foamy Viruses (SFV) in Brazilian New World Primates Identifies Novel SFV Lineages and Host Age‑Related Infections Cláudia P
Muniz et al. Retrovirology (2015) 12:94 DOI 10.1186/s12977-015-0217-x RESEARCH Open Access An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age‑related infections Cláudia P. Muniz1,2, Hongwei Jia2, Anupama Shankar2, Lian L. Troncoso1, Anderson M. Augusto3, Elisabete Farias1, Alcides Pissinatti4, Luiz P. Fedullo3, André F. Santos1, Marcelo A. Soares1,5 and William M. Switzer2* Abstract Background: While simian foamy viruses have co-evolved with their primate hosts for millennia, most scientific stud- ies have focused on understanding infection in Old World primates with little knowledge available on the epidemiol- ogy and natural history of SFV infection in New World primates (NWPs). To better understand the geographic and species distribution and evolutionary history of SFV in NWPs we extend our previous studies in Brazil by screening 15 genera consisting of 29 NWP species (140 monkeys total), including five genera (Brachyteles, Cacajao, Callimico, Mico, and Pithecia) not previously analyzed. Monkey blood specimens were tested using a combination of both serology and PCR to more accurately estimate prevalence and investigate transmission patterns. Sequences were phylogeneti- cally analyzed to infer SFV and host evolutionary histories. Results: The overall serologic and molecular prevalences were 42.8 and 33.6 %, respectively, with a combined assay prevalence of 55.8 %. Discordant serology and PCR results were observed for 28.5 % of the samples, indicating that both methods are currently necessary for estimating NWP SFV prevalence. SFV prevalence in sexually mature NWPs with a positive result in any of the WB or PCR assays was 51/107 (47.7 %) compared to 20/33 (61 %) for immature animals. -
Animals Traded for Traditional Medicine at the Faraday Market in South Africa: Species Diversity and Conservation Implications M
Journal of Zoology Journal of Zoology. Print ISSN 0952-8369 Animals traded for traditional medicine at the Faraday market in South Africa: species diversity and conservation implications M. J. Whiting1,2, V. L. Williams1 & T. J. HibbittsÃ,1 1 School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa 2 Department of Biological Sciences, Macquarie University, Sydney, Australia Keywords Abstract biodiversity; threatened species; ethnozoology; mammal; bird; reptile. In South Africa, animals and plants are commonly used as traditional medicine for both the healing of ailments and for symbolic purposes such as improving Correspondence relationships and attaining good fortune. The aim of this study was twofold: to Department of Biological Sciences, quantify the species richness and diversity of traded animal species and to assess Macquarie University, Sydney, NSW 2109, the trade in species of conservation concern. We surveyed the Faraday traditional Australia. medicine market in Johannesburg and conducted 45 interviews of 32 traders Email: [email protected] during 23 visits. We identified 147 vertebrate species representing about 9% of the total number of vertebrate species in South Africa and about 63% of the total ÃCurrent address: Department of Wildlife number of documented species (excluding domestic animals) traded in all South and Fisheries Sciences, Texas A & M African traditional medicine markets. The vertebrates included 60 mammal University, College Station, TX 77843-2258, species, 33 reptile species, 53 bird species and one amphibian species. Overall, USA. species diversity in the Faraday market was moderately high and highest for mammals and birds, respectively. Evenness values indicated that relatively few Editor: Andrew Kitchener species were dominant. -
A Case of Syndromic X-Linked Ichthyosis with Léri-Weill Dyschondrosteosis
Acta Derm Venereol 2016; 96: 814–815 SHORT COMMUNICATION A Case of Syndromic X-linked Ichthyosis with Léri-Weill Dyschondrosteosis Claire Abasq-Thomas1, Sébastien Schmitt2, Emilie Brenaut1, Chantal Metz3, Jean Chiesa4 and Laurent Misery1 Departments of 1Dermatology and 3Paediatrics, University Hospital of Brest, FR-29609 Brest, 2Department of Genetics, University Hospital of Nantes, Nantes, and 4Department of Genetics, University Hospital of Nîmes, Nîmes, France. E-mail: [email protected] Accepted Feb 1, 2016; Epub ahead of print Feb 2, 2016 Léri-Weill dyschondrosteosis (LWD) is a skeletal dys- tention deficit hyperactivity disorder (ADHP) was suspected plasia marked by disproportionate short stature and initially, but only the patient’s depression, which was probably related to the disease as well as his short stature and skin ap- characteristic Madelung wrist deformity, which is an pearance, was evident after hospitalization. epiphyseal growth plate disturbance characterized by At the dermatology consultation, he presented with dark- dorsal and radial bowing of the radius. In approximately brown scales on the extensor surfaces and a dirty appearance 70% of cases, LWD is caused by haploinsufficiency of the neck. Grey polygonal scales predominated on the lower of the short stature homeobox (SHOX) gene, which limbs. Flexures were affected, but the palms, soles, hairs and nails were spared. An X-linked ichthyosis (XLI) was suspected. maps to the pseudoautosomal region 1 (PAR1) of the Given the associated abnormalities, a contiguous gene syn- sexual chromosomes (Xp22.33 and Yp11.32). Haplo- drome caused by a deletion in Xp was suspected and appropriate insufficiency results from heterozygous mutations and additional investigations were initiated. -
High-Throughput Human Primary Cell-Based Airway Model for Evaluating Infuenza, Coronavirus, Or Other Respira- Tory Viruses in Vitro
www.nature.com/scientificreports OPEN High‑throughput human primary cell‑based airway model for evaluating infuenza, coronavirus, or other respiratory viruses in vitro A. L. Gard1, R. J. Luu1, C. R. Miller1, R. Maloney1, B. P. Cain1, E. E. Marr1, D. M. Burns1, R. Gaibler1, T. J. Mulhern1, C. A. Wong1, J. Alladina3, J. R. Coppeta1, P. Liu2, J. P. Wang2, H. Azizgolshani1, R. Fennell Fezzie1, J. L. Balestrini1, B. C. Isenberg1, B. D. Medof3, R. W. Finberg2 & J. T. Borenstein1* Infuenza and other respiratory viruses present a signifcant threat to public health, national security, and the world economy, and can lead to the emergence of global pandemics such as from COVID‑ 19. A barrier to the development of efective therapeutics is the absence of a robust and predictive preclinical model, with most studies relying on a combination of in vitro screening with immortalized cell lines and low‑throughput animal models. Here, we integrate human primary airway epithelial cells into a custom‑engineered 96‑device platform (PREDICT96‑ALI) in which tissues are cultured in an array of microchannel‑based culture chambers at an air–liquid interface, in a confguration compatible with high resolution in‑situ imaging and real‑time sensing. We apply this platform to infuenza A virus and coronavirus infections, evaluating viral infection kinetics and antiviral agent dosing across multiple strains and donor populations of human primary cells. Human coronaviruses HCoV‑NL63 and SARS‑CoV‑2 enter host cells via ACE2 and utilize the protease TMPRSS2 for spike protein priming, and we confrm their expression, demonstrate infection across a range of multiplicities of infection, and evaluate the efcacy of camostat mesylate, a known inhibitor of HCoV‑NL63 infection. -
A Strategic Research Alliance: Turner Syndrome and Sex Differences
A strategic research alliance: Turner syndrome and sex differences The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Roman, Adrianna K. San and David C. Page. “A strategic research alliance: Turner syndrome and sex differences.” American journal of medical genetics. Part C, Seminars in medical genetics 181 (2019): 59-67 © 2019 The Author(s) As Published 10.1002/AJMG.C.31677 Publisher Wiley Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/125103 Terms of Use Creative Commons Attribution-Noncommercial-Share Alike Detailed Terms http://creativecommons.org/licenses/by-nc-sa/4.0/ HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Am J Med Manuscript Author Genet C Semin Manuscript Author Med Genet. Author manuscript; available in PMC 2019 March 12. Published in final edited form as: Am J Med Genet C Semin Med Genet. 2019 March ; 181(1): 59–67. doi:10.1002/ajmg.c.31677. A strategic research alliance: Turner syndrome and sex differences Adrianna K. San Roman1 and David C. Page1,2,3 1Whitehead Institute, Cambridge, MA 02142, USA 2Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142 3Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139 Abstract Sex chromosome constitution varies in the human population, both between the sexes (46,XX females and 46,XY males), and within the sexes (for example, 45,X and 46,XX females, and 47,XXY and 46,XY males). Coincident with this genetic variation are numerous phenotypic differences between males and females, and individuals with sex chromosome aneuploidy.