Annonaceae), a Monospecifi C Genus Endemic to Gabon
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Acta Botanica Brasilica Doi: 10.1590/0102-33062020Abb0051
Acta Botanica Brasilica doi: 10.1590/0102-33062020abb0051 Toward a phylogenetic reclassification of the subfamily Ambavioideae (Annonaceae): establishment of a new subfamily and a new tribe Tanawat Chaowasku1 Received: February 14, 2020 Accepted: June 12, 2020 . ABSTRACT A molecular phylogeny of the subfamily Ambavioideae (Annonaceae) was reconstructed using up to eight plastid DNA regions (matK, ndhF, and rbcL exons; trnL intron; atpB-rbcL, psbA-trnH, trnL-trnF, and trnS-trnG intergenic spacers). The results indicate that the subfamily is not monophyletic, with the monotypic genus Meiocarpidium resolved as the second diverging lineage of Annonaceae after Anaxagorea (the only genus of Anaxagoreoideae) and as the sister group of a large clade consisting of the rest of Annonaceae. Consequently, a new subfamily, Meiocarpidioideae, is established to accommodate the enigmatic African genus Meiocarpidium. In addition, the subfamily Ambavioideae is redefined to contain two major clades formally recognized as two tribes. The tribe Tetramerantheae consisting of only Tetrameranthus is enlarged to include Ambavia, Cleistopholis, and Mezzettia; and Canangeae, a new tribe comprising Cananga, Cyathocalyx, Drepananthus, and Lettowianthus, are erected. The two tribes are principally distinguishable from each other by differences in monoploid chromosome number, branching architecture, and average pollen size (monads). New relationships were retrieved within Tetramerantheae, with Mezzettia as the sister group of a clade containing Ambavia and Cleistopholis. Keywords: Annonaceae, Ambavioideae, Meiocarpidium, molecular phylogeny, systematics, taxonomy et al. 2019). Every subfamily received unequivocally Introduction and consistently strong molecular support except the subfamily Ambavioideae, which is composed of nine Annonaceae, a pantropical family of flowering plants genera: Ambavia, Cananga, Cleistopholis, Cyathocalyx, prominent in lowland rainforests, consist of 110 genera Drepananthus, Lettowianthus, Meiocarpidium, Mezzettia, (Guo et al. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
ORIGINAL RESEARCH published: 09 January 2019 doi: 10.3389/fpls.2018.01941 Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes Thomas L. P. Couvreur 1*†, Andrew J. Helmstetter 1†, Erik J. M. Koenen 2, Kevin Bethune 1, Rita D. Brandão 3, Stefan A. Little 4, Hervé Sauquet 4,5 and Roy H. J. Erkens 3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France, 2 Institute of Systematic Botany, University of Zurich, Zurich, Switzerland, 3 Maastricht Science Programme, Maastricht University, Maastricht, Netherlands, 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, Orsay, France, 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Edited by: Jim Leebens-Mack, University of Georgia, United States Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic Reviewed by: reconstruction is becoming an important tool for plant systematics and evolution. Eric Wade Linton, Central Michigan University, Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, United States occurring across all major and minor tropical forests of the world. Baits were designed Mario Fernández-Mazuecos, by sequencing the transcriptomes of five species from two of the largest Annonaceae Real Jardín Botánico (RJB), Spain Angelica Cibrian-Jaramillo, subfamilies. Orthologous loci were identified. The resulting baiting kit was used to Centro de Investigación y de Estudios reconstruct phylogenetic relationships at two different levels using concatenated and Avanzados (CINVESTAV), Mexico gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and *Correspondence: Thomas L. P. -
Carpel Vasculature and Implications on Integrated Axial-Foliar
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted January 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Serial Section-Based 3D Reconstruction of Anaxagorea (Annonaceae) Carpel 2 Vasculature and Implications on Integrated Axial-Foliar Origin of Angiosperm 3 Carpels 4 5 Ya Li, 1,† Wei Du, 1,† Ye Chen, 2 Shuai Wang,3 Xiao-Fan Wang1,* 6 1 College of Life Sciences, Wuhan University, Wuhan 430072, China 7 2 Department of Environmental Art Design, Tianjin Arts and Crafts Vocational 8 College, Tianjin 300250, China 9 3 College of Life Sciences and Environment, Hengyang Normal University, 10 Hengyang 421001, China 11 *Author for correspondence. E-mail: [email protected] 12 † These authors have contributed equally to this work 13 14 Running Title: Integrated Axial-Foliar Carpel Origin 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted January 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 15 Abstract 16 The carpel is the basic unit of the gynoecium in angiosperms and one of the most 17 important morphological features distinguishing angiosperms from gymnosperms; 18 therefore, carpel origin is of great significance in angiosperm phylogenetic origin. 19 Recent consensus favors the interpretation that the carpel originates from the fusion of 20 an ovule-bearing axis and the phyllome that subtends it. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
bioRxiv preprint doi: https://doi.org/10.1101/440925; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*+, Andrew J. Helmstetter1,+, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brandão3, Stefan Little4, Hervé Sauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Zürich, Switzerland 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] + authors contributed equally Abstract Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 109 genera and ca. 2450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. -
2020.05.22.111716.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Serial Section-Based 3D Reconstruction of Anaxagorea Carpel Vasculature and 2 Implications for Integrated Axial-Foliar Homology of Carpels 3 4 Ya Li, 1,† Wei Du, 1,† Ye Chen, 2 Shuai Wang,3 Xiao-Fan Wang1,* 5 1 College of Life Sciences, Wuhan University, Wuhan 430072, China 6 2 Department of Environmental Art Design, Tianjin Arts and Crafts Vocational 7 College, Tianjin 300250, China 8 3 College of Life Sciences and Environment, Hengyang Normal University, 9 Hengyang 421001, China 10 *Author for correspondence. E-mail: [email protected] 11 † Both authors contributed equally to this work 12 13 Running Title: Integrated Axial-Foliar Homology of Carpel 14 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 15 Abstract 16 The carpel is the basic unit of the gynoecium in angiosperms and one of the most 17 important morphological features differentiating angiosperms from gymnosperms; 18 therefore, carpel origin is of great significance in the phylogeny of angiosperms. 19 However, the origin of the carpel has not been solved. The more recent consensus 20 favors the interpretation that the ancestral carpel is the result of fusion between an 21 ovule-bearing axis and the phyllome that subtends it. -
Revealing the Secrets of African Annonaceae : Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monod
Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Promotor: Prof.dr. Marc S.M. Sosef Hoogleraar Biosystematiek Wageningen Universiteit Co-promotoren: Dr. James E. Richardson Higher Scientific Officer, Tropical Botany Royal Botanic Garden, Edinburgh, United Kingdom Dr. Lars W. Chatrou Universitair Docent, leerstoelgroep Biosystematiek Wageningen Universiteit Promotiecommissie: Prof.dr.ir. Jaap Bakker (Wageningen Universiteit) Prof.dr. Erik F. Smets (Universiteit Leiden) Prof.dr. Paul J.M. Maas (Universiteit Utrecht) Prof.dr. David Johnson (Ohio Wesleyan University, Delaware, USA) Dit onderzoek is uitgevoerd binnen de onderzoekschool Biodiversiteit Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit Prof.dr. M.J. Kropff in het openbaar te verdedigen op maandag 21 april 2008 des namiddags te vier uur in de Aula Thomas L.P. Couvreur (2008) Revealing the Secrets of African Annonaceae: Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora PhD thesis Wageningen University, The Netherlands With references – with summaries in English and Dutch. ISBN 978-90-8504-924-1 to my parents Contents CHAPTER 1: General Introduction 1 CHAPTER 2: Substitution Rate Prior Influences Posterior Mapping of Discrete Morphological -
Angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1
Massoni et al. BMC Evolutionary Biology (2015) 15:49 DOI 10.1186/s12862-015-0320-6 RESEARCH ARTICLE Open Access Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1 Abstract Background: With 10,000 species, Magnoliidae are the largest clade of flowering plants outside monocots and eudicots. Despite an ancient and rich fossil history, the tempo and mode of diversification of Magnoliidae remain poorly known. Using a molecular data set of 12 markers and 220 species (representing >75% of genera in Magnoliidae) and six robust, internal fossil age constraints, we estimate divergence times and significant shifts of diversification across the clade. In addition, we test the sensitivity of magnoliid divergence times to the choice of relaxed clock model and various maximum age constraints for the angiosperms. Results: Compared with previous work, our study tends to push back in time the age of the crown node of Magnoliidae (178.78-126.82 million years, Myr), and of the four orders, Canellales (143.18-125.90 Myr), Piperales (158.11-88.15 Myr), Laurales (165.62-112.05 Myr), and Magnoliales (164.09-114.75 Myr). Although families vary in crown ages, Magnoliidae appear to have diversified into most extant families by the end of the Cretaceous. The strongly imbalanced distribution of extant diversity within Magnoliidae appears to be best explained by models of diversification with 6 to 13 shifts in net diversification rates. Significant increases are inferred within Piperaceae and Annonaceae, while the low species richness of Calycanthaceae, Degeneriaceae, and Himantandraceae appears to be the result of decreases in both speciation and extinction rates. -
Plant Ana Tomy
МОСКОВСКИЙ ГОСУДАРСТВЕННЫЙ УНИВЕРСИТЕТ ИМЕНИ М.В. ЛОМОНОСОВА БИОЛОГИЧЕСКИЙ ФАКУЛЬТЕТ PLANT ANATOMY: TRADITIONS AND PERSPECTIVES Международный симпозиум, АНАТОМИЯ РАСТЕНИЙ: посвященный 90-летию профессора PLANT ANATOMY: TRADITIONS AND PERSPECTIVES AND TRADITIONS ANATOMY: PLANT ТРАДИЦИИ И ПЕРСПЕКТИВЫ Людмилы Ивановны Лотовой 1 ЧАСТЬ 1 московский госУдАрствеННый УНиверситет имени м. в. ломоНосовА Биологический факультет АНАТОМИЯ РАСТЕНИЙ: ТРАДИЦИИ И ПЕРСПЕКТИВЫ Ìàòåðèàëû Ìåæäóíàðîäíîãî ñèìïîçèóìà, ïîñâÿùåííîãî 90-ëåòèþ ïðîôåññîðà ËÞÄÌÈËÛ ÈÂÀÍÎÂÍÛ ËÎÒÎÂÎÉ 16–22 ñåíòÿáðÿ 2019 ã.  двуõ ÷àñòÿõ ×àñòü 1 МАТЕРИАЛЫ НА АНГЛИЙСКОМ ЯЗЫКЕ PLANT ANATOMY: ТRADITIONS AND PERSPECTIVES Materials of the International Symposium dedicated to the 90th anniversary of Prof. LUDMILA IVANOVNA LOTOVA September 16–22, Moscow In two parts Part 1 CONTRIBUTIONS IN ENGLISH москва – 2019 Удк 58 DOI 10.29003/m664.conf-lotova2019_part1 ББк 28.56 A64 Издание осуществлено при финансовой поддержке Российского фонда фундаментальных исследований по проекту 19-04-20097 Анатомия растений: традиции и перспективы. материалы международного A64 симпозиума, посвященного 90-летию профессора людмилы ивановны лотовой. 16–22 сентября 2019 г. в двух частях. – москва : мАкс пресс, 2019. ISBN 978-5-317-06198-2 Чaсть 1. материалы на английском языке / ред.: А. к. тимонин, д. д. соколов. – 308 с. ISBN 978-5-317-06174-6 Удк 58 ББк 28.56 Plant anatomy: traditions and perspectives. Materials of the International Symposium dedicated to the 90th anniversary of Prof. Ludmila Ivanovna Lotova. September 16–22, 2019. In two parts. – Moscow : MAKS Press, 2019. ISBN 978-5-317-06198-2 Part 1. Contributions in English / Ed. by A. C. Timonin, D. D. Sokoloff. – 308 p. ISBN 978-5-317-06174-6 Издание доступно на ресурсе E-library ISBN 978-5-317-06198-2 © Авторы статей, 2019 ISBN 978-5-317-06174-6 (Часть 1) © Биологический факультет мгУ имени м. -
Tr Aditions and Perspec Tives Plant Anatomy
МОСКОВСКИЙ ГОСУДАРСТВЕННЫЙ УНИВЕРСИТЕТ ИМЕНИ М.В. ЛОМОНОСОВА БИОЛОГИЧЕСКИЙ ФАКУЛЬТЕТ PLANT ANATOMY: TRADITIONS AND PERSPECTIVES Международный симпозиум, АНАТОМИЯ РАСТЕНИЙ: посвященный 90-летию профессора PLANT ANATOMY: TRADITIONS AND PERSPECTIVES AND TRADITIONS ANATOMY: PLANT ТРАДИЦИИ И ПЕРСПЕКТИВЫ Людмилы Ивановны Лотовой 1 ЧАСТЬ 1 московский госУдАрствеННый УНиверситет имени м. в. ломоНосовА Биологический факультет АНАТОМИЯ РАСТЕНИЙ: ТРАДИЦИИ И ПЕРСПЕКТИВЫ Ìàòåðèàëû Ìåæäóíàðîäíîãî ñèìïîçèóìà, ïîñâÿùåííîãî 90-ëåòèþ ïðîôåññîðà ËÞÄÌÈËÛ ÈÂÀÍÎÂÍÛ ËÎÒÎÂÎÉ 16–22 ñåíòÿáðÿ 2019 ã.  двуõ ÷àñòÿõ ×àñòü 1 МАТЕРИАЛЫ НА АНГЛИЙСКОМ ЯЗЫКЕ PLANT ANATOMY: ТRADITIONS AND PERSPECTIVES Materials of the International Symposium dedicated to the 90th anniversary of Prof. LUDMILA IVANOVNA LOTOVA September 16–22, Moscow In two parts Part 1 CONTRIBUTIONS IN ENGLISH москва – 2019 Удк 58 DOI 10.29003/m664.conf-lotova2019_part1 ББк 28.56 A64 Издание осуществлено при финансовой поддержке Российского фонда фундаментальных исследований по проекту 19-04-20097 Анатомия растений: традиции и перспективы. материалы международного A64 симпозиума, посвященного 90-летию профессора людмилы ивановны лотовой. 16–22 сентября 2019 г. в двух частях. – москва : мАкс пресс, 2019. ISBN 978-5-317-06198-2 Чaсть 1. материалы на английском языке / ред.: А. к. тимонин, д. д. соколов. – 308 с. ISBN 978-5-317-06174-6 Удк 58 ББк 28.56 Plant anatomy: traditions and perspectives. Materials of the International Symposium dedicated to the 90th anniversary of Prof. Ludmila Ivanovna Lotova. September 16–22, 2019. In two parts. – Moscow : MAKS Press, 2019. ISBN 978-5-317-06198-2 Part 1. Contributions in English / Ed. by A. C. Timonin, D. D. Sokoloff. – 308 p. ISBN 978-5-317-06174-6 Издание доступно на ресурсе E-library ISBN 978-5-317-06198-2 © Авторы статей, 2019 ISBN 978-5-317-06174-6 (Часть 1) © Биологический факультет мгУ имени м. -
Afbreken Bvg3.Qxd 24-11-2003 16:44 Page 7
afbreken BvG3.qxd 24-11-2003 16:44 Page 7 Chapter 1 General introduction Barend S. van Gemerden afbreken BvG3.qxd 24-11-2003 16:44 Page 9 African rain forests Tropical rain forests are among the most complex and species-rich eco- systems on Earth (Wilson 1995). The main rain forest area in Africa is the Guineo-Congolian region that extends from Senegal to western Kenya and northern Angola (White 1979; Figure 1a). Although the rain forests in this region are generally less diverse than those in the Neo- tropics and Indo-Malaysia (Huston 1994), they are estimated to house more than half of Africa’s species (Sayer et al. 1992). For example, the region holds some 84% of the primate species, 68% of the passerine bird species and 66% of the butterfly species found in Africa (Crowe & Crowe 1982; Carcasson 1964; Sayer et al. 1992). In addition, an esti- mated 8000 plant species are found in the Guineo-Congolian region (Sayer et al. 1992) Figure 1. Distribution of rain forests in West and Central Africa; a) phytochoria of White (1979) indicating maximum rainforest extent in the Guineo-Congolian centre of endemism (dark grey); b) rain forest cover in 1990 (Iremonger et al 1997); c) protected areas (Iremonger et al. 1997); d) postu- lated Pleistocene rain forest refugia, i.e. centres of local endemism (Sosef 1994). Arrow in a) indicates location of research site in southern Cameroon (3°N, 10°E). 9 While the characteristics and functioning of the African rain forests are still poorly understood, they are increasingly subject to large-scale degra- dation, fragmentation and deforestation (Sayer et al. -
A New Subfamilial and Tribal Classification of the Pantropical Flowering Plant Family Annonaceae Informed by Molecular Phylogene
bs_bs_banner Botanical Journal of the Linnean Society, 2012, 169, 5–40. With 1 figure A new subfamilial and tribal classification of the pantropical flowering plant family Annonaceae informed by molecular phylogenetics LARS W. CHATROU1*, MICHAEL D. PIRIE2, ROY H. J. ERKENS3,4, THOMAS L. P. COUVREUR5, KURT M. NEUBIG6, J. RICHARD ABBOTT7, JOHAN B. MOLS8, JAN W. MAAS3, RICHARD M. K. SAUNDERS9 and MARK W. CHASE10 1Wageningen University, Biosystematics Group, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands 2Department of Biochemistry, University of Stellenbosch, Stellenbosch, Private Bag X1, Matieland 7602, South Africa 3Utrecht University, Institute of Environmental Biology, Ecology and Biodiversity Group, Padualaan 8, 3584 CH, Utrecht, the Netherlands 4Maastricht Science Programme, Maastricht University, Kapoenstraat 2, 6211 KL Maastricht, the Netherlands 5Institut de Recherche pour le Développement (IRD), UMR DIA-DE, DYNADIV Research Group, 911, avenue Agropolis, BP 64501, F-34394 Montpellier cedex 5, France 6Florida Museum of Natural History, University of Florida, PO Box 117800, Gainesville, FL 32611-7800, USA 7Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA 8Netherlands Centre for Biodiversity, Naturalis (section NHN), Leiden University, Einsteinweg 2, 2333 CC Leiden, the Netherlands 9School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China 10Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK Received 14 October 2011; revised 11 December 2011; accepted for publication 24 January 2012 The pantropical flowering plant family Annonaceae is the most species-rich family of Magnoliales. Despite long-standing interest in the systematics of Annonaceae, no authoritative classification has yet been published in the light of recent molecular phylogenetic analyses. -
A New Annonaceae Genus, <I>Wuodendron</I>, Provides Support for a Post-Boreotropical Origin of the Asian-Neotropical
Xue & al. • A new Annonaceae genus, Wuodendron TAXON 67 (2) • April 2018: 250–266 A new Annonaceae genus, Wuodendron, provides support for a post-boreotropical origin of the Asian-Neotropical disjunction in the tribe Miliuseae Bine Xue,1 Yun-Hong Tan,2,3 Daniel C. Thomas,4 Tanawat Chaowasku,5 Xue-Liang Hou6 & Richard M.K. Saunders7 1 Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 2 Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw, Myanmar 3 Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun 666303, Yunnan, China 4 National Parks Board, Singapore Botanic Gardens, 1 Cluny Road, Singapore 259569, Singapore 5 Herbarium, Division of Plant Science and Technology, Department of Biology, Faculty of Science, Chiang Mai University, Thailand 6 School of Life Sciences, Xiamen University, Xiamen 361005, Fujian, China 7 School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China Authors for correspondence: Bine Xue, [email protected]; Yunhong Tan, [email protected] DOI https://doi.org/10.12705/672.2 Abstract Recent molecular and morphological studies have clarified generic circumscriptions in Annonaceae tribe Miliuseae and resulted in the segregation of disparate elements from the previously highly polyphyletic genus Polyalthia s.l. Several names in Polyalthia nevertheless remain unresolved, awaiting