Carpel Vasculature and Implications on Integrated Axial-Foliar
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Acta Botanica Brasilica Doi: 10.1590/0102-33062020Abb0051
Acta Botanica Brasilica doi: 10.1590/0102-33062020abb0051 Toward a phylogenetic reclassification of the subfamily Ambavioideae (Annonaceae): establishment of a new subfamily and a new tribe Tanawat Chaowasku1 Received: February 14, 2020 Accepted: June 12, 2020 . ABSTRACT A molecular phylogeny of the subfamily Ambavioideae (Annonaceae) was reconstructed using up to eight plastid DNA regions (matK, ndhF, and rbcL exons; trnL intron; atpB-rbcL, psbA-trnH, trnL-trnF, and trnS-trnG intergenic spacers). The results indicate that the subfamily is not monophyletic, with the monotypic genus Meiocarpidium resolved as the second diverging lineage of Annonaceae after Anaxagorea (the only genus of Anaxagoreoideae) and as the sister group of a large clade consisting of the rest of Annonaceae. Consequently, a new subfamily, Meiocarpidioideae, is established to accommodate the enigmatic African genus Meiocarpidium. In addition, the subfamily Ambavioideae is redefined to contain two major clades formally recognized as two tribes. The tribe Tetramerantheae consisting of only Tetrameranthus is enlarged to include Ambavia, Cleistopholis, and Mezzettia; and Canangeae, a new tribe comprising Cananga, Cyathocalyx, Drepananthus, and Lettowianthus, are erected. The two tribes are principally distinguishable from each other by differences in monoploid chromosome number, branching architecture, and average pollen size (monads). New relationships were retrieved within Tetramerantheae, with Mezzettia as the sister group of a clade containing Ambavia and Cleistopholis. Keywords: Annonaceae, Ambavioideae, Meiocarpidium, molecular phylogeny, systematics, taxonomy et al. 2019). Every subfamily received unequivocally Introduction and consistently strong molecular support except the subfamily Ambavioideae, which is composed of nine Annonaceae, a pantropical family of flowering plants genera: Ambavia, Cananga, Cleistopholis, Cyathocalyx, prominent in lowland rainforests, consist of 110 genera Drepananthus, Lettowianthus, Meiocarpidium, Mezzettia, (Guo et al. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
ORIGINAL RESEARCH published: 09 January 2019 doi: 10.3389/fpls.2018.01941 Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes Thomas L. P. Couvreur 1*†, Andrew J. Helmstetter 1†, Erik J. M. Koenen 2, Kevin Bethune 1, Rita D. Brandão 3, Stefan A. Little 4, Hervé Sauquet 4,5 and Roy H. J. Erkens 3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France, 2 Institute of Systematic Botany, University of Zurich, Zurich, Switzerland, 3 Maastricht Science Programme, Maastricht University, Maastricht, Netherlands, 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, Orsay, France, 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Edited by: Jim Leebens-Mack, University of Georgia, United States Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic Reviewed by: reconstruction is becoming an important tool for plant systematics and evolution. Eric Wade Linton, Central Michigan University, Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, United States occurring across all major and minor tropical forests of the world. Baits were designed Mario Fernández-Mazuecos, by sequencing the transcriptomes of five species from two of the largest Annonaceae Real Jardín Botánico (RJB), Spain Angelica Cibrian-Jaramillo, subfamilies. Orthologous loci were identified. The resulting baiting kit was used to Centro de Investigación y de Estudios reconstruct phylogenetic relationships at two different levels using concatenated and Avanzados (CINVESTAV), Mexico gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and *Correspondence: Thomas L. P. -
BMC Evolutionary Biology Biomed Central
BMC Evolutionary Biology BioMed Central Research article Open Access Evolutionary divergence times in the Annonaceae: evidence of a late Miocene origin of Pseuduvaria in Sundaland with subsequent diversification in New Guinea Yvonne CF Su* and Richard MK Saunders* Address: Division of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, PR China Email: Yvonne CF Su* - [email protected]; Richard MK Saunders* - [email protected] * Corresponding authors Published: 2 July 2009 Received: 3 March 2009 Accepted: 2 July 2009 BMC Evolutionary Biology 2009, 9:153 doi:10.1186/1471-2148-9-153 This article is available from: http://www.biomedcentral.com/1471-2148/9/153 © 2009 Su and Saunders; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Phylogenetic analyses of the Annonaceae consistently identify four clades: a basal clade consisting of Anaxagorea, and a small 'ambavioid' clade that is sister to two main clades, the 'long branch clade' (LBC) and 'short branch clade' (SBC). Divergence times in the family have previously been estimated using non-parametric rate smoothing (NPRS) and penalized likelihood (PL). Here we use an uncorrelated lognormal (UCLD) relaxed molecular clock in BEAST to estimate diversification times of the main clades within the family with a focus on the Asian genus Pseuduvaria within the SBC. Two fossil calibration points are applied, including the first use of the recently discovered Annonaceae fossil Futabanthus. -
Anaxagorea by J. During Preparation Generic Anaxagorea Subsequent
Studies in Annonaceae. III. The leaf indument in Anaxagorea by J. Koek-Noorman and W. Berendsen Institute of Systematic Botany/Departmentof Molecular Biology, University of Utrecht, Heidelberglaan2, 3508 TC Utrecht, the Netherlands Communicated by Prof. F.A. Stafleu at the meeting of September 24, 1984 SUMMARY An unusual type of trichome is described for Anaxagorea(Annonaceae). On top of the stalk cell, cells form extremely thinwalled single, branched or stellate trichomes. The terminal cell(s) always end bluntly. When the thinwalled cells have been shed, the thick cuticle of the stalk cell remains as a cylindrical scar. Until now, this trichome type has not yet been found in other annonaceous Our data contradict of other authors Kramer Roth genera. reports (Jovet-Ast 1942, 1969, 1981) with regard to occurrence and structure of hairs in Anaxagorea. INTRODUCTION During the preparation of the generic revision of Anaxagorea (Maas & Westra 1984, 1985)our attention was drawn to the fact that subsequent reports in the literature(a.o. Jovet-Ast 1942, Kramer 1969, Roth 1981) on presence and of trichomes in often for A. type Anaxagorea are conflicting. For instance, acuminata, Kramer (1969) reports hairs to be absent. Jovet-Ast (1942) men- tioned single hairs consisting of 1-4 basal cells and an enlarged obtuse terminal cell. Timmerman, in a preliminary survey of the genus(pers. comm.), suggested the of coffee brown stellate hairs the abaxial leaf side. presence on Deviating results may be due to several reasons. Although in all species a leaf indument was found (this paper), the leaves are nearly always becoming glabrous with The trichomes that often hand lensd is sufficient age. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
bioRxiv preprint doi: https://doi.org/10.1101/440925; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*+, Andrew J. Helmstetter1,+, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brandão3, Stefan Little4, Hervé Sauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Zürich, Switzerland 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] + authors contributed equally Abstract Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 109 genera and ca. 2450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. -
Phylogeny and Geographic History of Annonaceae Phylogénie Et Histoire Géographique Des Annonaceae Phylogenie Und Geographische Geschichte Der Annonaceae James A
Document generated on 09/30/2021 2:57 p.m. Géographie physique et Quaternaire Phylogeny and Geographic History of Annonaceae Phylogénie et histoire géographique des Annonaceae Phylogenie und geographische Geschichte der Annonaceae James A. Doyle and Annick Le Thomas Volume 51, Number 3, 1997 Article abstract Whereas Takhtajan and Smith situated the origin of angiosperms between URI: https://id.erudit.org/iderudit/033135ar Southeast Asia and Australia, Walker and Le Thomas emphasized the DOI: https://doi.org/10.7202/033135ar concentration of primitive pollen types of Annonaceae in South America and Africa, suggesting instead a Northern Gondwanan origin for this family of See table of contents primitive angiosperms. A cladistic analysis of Annonaceae shows a basal split of the family into Anaxagorea, the only genus with an Asian and Neotropical distribution, and a basically African and Neotropical line that includes the rest Publisher(s) of the family. Several advanced lines occur in both Africa and Asia, one of which reaches Australia. This pattern may reflect the following history: (a) Les Presses de l'Université de Montréal disjunction of Laurasian (Anaxagorea) and Northern Gondwanan lines in the Early Cretaceous, when interchanges across the Tethys were still easy and the ISSN major lines of Magnoliidae are documented by paleobotany; (b) radiation of the Northern Gondwanan line during the Late Cretaceous, while oceanic 0705-7199 (print) barriers were widening; (c) dispersal of African lines into Laurasia due to 1492-143X (digital) northward movement of Africa and India in the Early Tertiary, attested by the presence of fossil seeds of Annonaceae in Europe, and interchanges between Explore this journal North and South America at the end of the Tertiary. -
2020.05.22.111716.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Serial Section-Based 3D Reconstruction of Anaxagorea Carpel Vasculature and 2 Implications for Integrated Axial-Foliar Homology of Carpels 3 4 Ya Li, 1,† Wei Du, 1,† Ye Chen, 2 Shuai Wang,3 Xiao-Fan Wang1,* 5 1 College of Life Sciences, Wuhan University, Wuhan 430072, China 6 2 Department of Environmental Art Design, Tianjin Arts and Crafts Vocational 7 College, Tianjin 300250, China 8 3 College of Life Sciences and Environment, Hengyang Normal University, 9 Hengyang 421001, China 10 *Author for correspondence. E-mail: [email protected] 11 † Both authors contributed equally to this work 12 13 Running Title: Integrated Axial-Foliar Homology of Carpel 14 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 15 Abstract 16 The carpel is the basic unit of the gynoecium in angiosperms and one of the most 17 important morphological features differentiating angiosperms from gymnosperms; 18 therefore, carpel origin is of great significance in the phylogeny of angiosperms. 19 However, the origin of the carpel has not been solved. The more recent consensus 20 favors the interpretation that the ancestral carpel is the result of fusion between an 21 ovule-bearing axis and the phyllome that subtends it. -
Revealing the Secrets of African Annonaceae : Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monod
Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Promotor: Prof.dr. Marc S.M. Sosef Hoogleraar Biosystematiek Wageningen Universiteit Co-promotoren: Dr. James E. Richardson Higher Scientific Officer, Tropical Botany Royal Botanic Garden, Edinburgh, United Kingdom Dr. Lars W. Chatrou Universitair Docent, leerstoelgroep Biosystematiek Wageningen Universiteit Promotiecommissie: Prof.dr.ir. Jaap Bakker (Wageningen Universiteit) Prof.dr. Erik F. Smets (Universiteit Leiden) Prof.dr. Paul J.M. Maas (Universiteit Utrecht) Prof.dr. David Johnson (Ohio Wesleyan University, Delaware, USA) Dit onderzoek is uitgevoerd binnen de onderzoekschool Biodiversiteit Revealing the Secrets of African Annonaceae Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora Thomas L.P. Couvreur Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit Prof.dr. M.J. Kropff in het openbaar te verdedigen op maandag 21 april 2008 des namiddags te vier uur in de Aula Thomas L.P. Couvreur (2008) Revealing the Secrets of African Annonaceae: Systematics, Evolution and Biogeography of the Syncarpous Genera Isolona and Monodora PhD thesis Wageningen University, The Netherlands With references – with summaries in English and Dutch. ISBN 978-90-8504-924-1 to my parents Contents CHAPTER 1: General Introduction 1 CHAPTER 2: Substitution Rate Prior Influences Posterior Mapping of Discrete Morphological -
Angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1
Massoni et al. BMC Evolutionary Biology (2015) 15:49 DOI 10.1186/s12862-015-0320-6 RESEARCH ARTICLE Open Access Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1 Abstract Background: With 10,000 species, Magnoliidae are the largest clade of flowering plants outside monocots and eudicots. Despite an ancient and rich fossil history, the tempo and mode of diversification of Magnoliidae remain poorly known. Using a molecular data set of 12 markers and 220 species (representing >75% of genera in Magnoliidae) and six robust, internal fossil age constraints, we estimate divergence times and significant shifts of diversification across the clade. In addition, we test the sensitivity of magnoliid divergence times to the choice of relaxed clock model and various maximum age constraints for the angiosperms. Results: Compared with previous work, our study tends to push back in time the age of the crown node of Magnoliidae (178.78-126.82 million years, Myr), and of the four orders, Canellales (143.18-125.90 Myr), Piperales (158.11-88.15 Myr), Laurales (165.62-112.05 Myr), and Magnoliales (164.09-114.75 Myr). Although families vary in crown ages, Magnoliidae appear to have diversified into most extant families by the end of the Cretaceous. The strongly imbalanced distribution of extant diversity within Magnoliidae appears to be best explained by models of diversification with 6 to 13 shifts in net diversification rates. Significant increases are inferred within Piperaceae and Annonaceae, while the low species richness of Calycanthaceae, Degeneriaceae, and Himantandraceae appears to be the result of decreases in both speciation and extinction rates. -
Plant Ana Tomy
МОСКОВСКИЙ ГОСУДАРСТВЕННЫЙ УНИВЕРСИТЕТ ИМЕНИ М.В. ЛОМОНОСОВА БИОЛОГИЧЕСКИЙ ФАКУЛЬТЕТ PLANT ANATOMY: TRADITIONS AND PERSPECTIVES Международный симпозиум, АНАТОМИЯ РАСТЕНИЙ: посвященный 90-летию профессора PLANT ANATOMY: TRADITIONS AND PERSPECTIVES AND TRADITIONS ANATOMY: PLANT ТРАДИЦИИ И ПЕРСПЕКТИВЫ Людмилы Ивановны Лотовой 1 ЧАСТЬ 1 московский госУдАрствеННый УНиверситет имени м. в. ломоНосовА Биологический факультет АНАТОМИЯ РАСТЕНИЙ: ТРАДИЦИИ И ПЕРСПЕКТИВЫ Ìàòåðèàëû Ìåæäóíàðîäíîãî ñèìïîçèóìà, ïîñâÿùåííîãî 90-ëåòèþ ïðîôåññîðà ËÞÄÌÈËÛ ÈÂÀÍÎÂÍÛ ËÎÒÎÂÎÉ 16–22 ñåíòÿáðÿ 2019 ã.  двуõ ÷àñòÿõ ×àñòü 1 МАТЕРИАЛЫ НА АНГЛИЙСКОМ ЯЗЫКЕ PLANT ANATOMY: ТRADITIONS AND PERSPECTIVES Materials of the International Symposium dedicated to the 90th anniversary of Prof. LUDMILA IVANOVNA LOTOVA September 16–22, Moscow In two parts Part 1 CONTRIBUTIONS IN ENGLISH москва – 2019 Удк 58 DOI 10.29003/m664.conf-lotova2019_part1 ББк 28.56 A64 Издание осуществлено при финансовой поддержке Российского фонда фундаментальных исследований по проекту 19-04-20097 Анатомия растений: традиции и перспективы. материалы международного A64 симпозиума, посвященного 90-летию профессора людмилы ивановны лотовой. 16–22 сентября 2019 г. в двух частях. – москва : мАкс пресс, 2019. ISBN 978-5-317-06198-2 Чaсть 1. материалы на английском языке / ред.: А. к. тимонин, д. д. соколов. – 308 с. ISBN 978-5-317-06174-6 Удк 58 ББк 28.56 Plant anatomy: traditions and perspectives. Materials of the International Symposium dedicated to the 90th anniversary of Prof. Ludmila Ivanovna Lotova. September 16–22, 2019. In two parts. – Moscow : MAKS Press, 2019. ISBN 978-5-317-06198-2 Part 1. Contributions in English / Ed. by A. C. Timonin, D. D. Sokoloff. – 308 p. ISBN 978-5-317-06174-6 Издание доступно на ресурсе E-library ISBN 978-5-317-06198-2 © Авторы статей, 2019 ISBN 978-5-317-06174-6 (Часть 1) © Биологический факультет мгУ имени м. -
Organogenesis and Vasculature of Anaxagorea and Its Implications For
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted June 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Organogenesis and Vasculature of Anaxagorea and its Implications for the 2 Integrated Axial-Foliar Origin of Angiosperm Carpel 3 4 Ya Li, 1,† Wei Du, 1,† Shuai Wang,2 Xiao-Fan Wang1,* 5 1 College of Life Sciences, Wuhan University, Wuhan 430072, China 6 2 College of Life Sciences and Environment, Hengyang Normal University, 7 Hengyang 421001, China 8 *Author for correspondence. E-mail: [email protected] 9 † Both authors contribute equally to this work 10 11 Running Title: The Axial-Foliar Origin of Carpel 12 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.22.111716; this version posted June 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 13 Abstract 14 The carpel is the definitive structure of angiosperms, the origin of carpel is of great 15 significance to the phylogenetic origin of angiosperms. Traditional view was that 16 angiosperm carpels were derived from structures similar to macrosporophylls of 17 pteridosperms or Bennettitales, which bear ovules on the surfaces of foliar organs. In 18 contrast, other views indicate that carpels are originated from the foliar appendage 19 enclosing the ovule-bearing axis. One of the key differences between these two 20 conflicting ideas lies in whether the ovular axis is involved in the evolution of carpel. -
Tr Aditions and Perspec Tives Plant Anatomy
МОСКОВСКИЙ ГОСУДАРСТВЕННЫЙ УНИВЕРСИТЕТ ИМЕНИ М.В. ЛОМОНОСОВА БИОЛОГИЧЕСКИЙ ФАКУЛЬТЕТ PLANT ANATOMY: TRADITIONS AND PERSPECTIVES Международный симпозиум, АНАТОМИЯ РАСТЕНИЙ: посвященный 90-летию профессора PLANT ANATOMY: TRADITIONS AND PERSPECTIVES AND TRADITIONS ANATOMY: PLANT ТРАДИЦИИ И ПЕРСПЕКТИВЫ Людмилы Ивановны Лотовой 1 ЧАСТЬ 1 московский госУдАрствеННый УНиверситет имени м. в. ломоНосовА Биологический факультет АНАТОМИЯ РАСТЕНИЙ: ТРАДИЦИИ И ПЕРСПЕКТИВЫ Ìàòåðèàëû Ìåæäóíàðîäíîãî ñèìïîçèóìà, ïîñâÿùåííîãî 90-ëåòèþ ïðîôåññîðà ËÞÄÌÈËÛ ÈÂÀÍÎÂÍÛ ËÎÒÎÂÎÉ 16–22 ñåíòÿáðÿ 2019 ã.  двуõ ÷àñòÿõ ×àñòü 1 МАТЕРИАЛЫ НА АНГЛИЙСКОМ ЯЗЫКЕ PLANT ANATOMY: ТRADITIONS AND PERSPECTIVES Materials of the International Symposium dedicated to the 90th anniversary of Prof. LUDMILA IVANOVNA LOTOVA September 16–22, Moscow In two parts Part 1 CONTRIBUTIONS IN ENGLISH москва – 2019 Удк 58 DOI 10.29003/m664.conf-lotova2019_part1 ББк 28.56 A64 Издание осуществлено при финансовой поддержке Российского фонда фундаментальных исследований по проекту 19-04-20097 Анатомия растений: традиции и перспективы. материалы международного A64 симпозиума, посвященного 90-летию профессора людмилы ивановны лотовой. 16–22 сентября 2019 г. в двух частях. – москва : мАкс пресс, 2019. ISBN 978-5-317-06198-2 Чaсть 1. материалы на английском языке / ред.: А. к. тимонин, д. д. соколов. – 308 с. ISBN 978-5-317-06174-6 Удк 58 ББк 28.56 Plant anatomy: traditions and perspectives. Materials of the International Symposium dedicated to the 90th anniversary of Prof. Ludmila Ivanovna Lotova. September 16–22, 2019. In two parts. – Moscow : MAKS Press, 2019. ISBN 978-5-317-06198-2 Part 1. Contributions in English / Ed. by A. C. Timonin, D. D. Sokoloff. – 308 p. ISBN 978-5-317-06174-6 Издание доступно на ресурсе E-library ISBN 978-5-317-06198-2 © Авторы статей, 2019 ISBN 978-5-317-06174-6 (Часть 1) © Биологический факультет мгУ имени м.