Chapter 5: Fishes of Southwestern Grasslands: Ecology, Conservation, and Management
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Hydraulic Modeling Analysis of the Middle Rio Grande River from Cochiti Dam to Galisteo Creek, New Mexico
THESIS HYDRAULIC MODELING ANALYSIS OF THE MIDDLE RIO GRANDE RIVER FROM COCHITI DAM TO GALISTEO CREEK, NEW MEXICO Submitted by Susan J. Novak Department of Civil Engineering In partial fulfillment of the requirements For the degree of Master of Science Colorado State University Fort Collins, Colorado Spring 2006 COLORADO STATE UNIVERSITY October 24, 2005 WE HEREBY RECOMMEND THAT THE THESIS PREPARED UNDER OUR SUPERVISION BY SUSAN JOY NOVAK ENTITLED HYDRAULIC MODELING ANALYSIS OF THE MIDDLE RIO GRANDE RIVER FROM COCHITI DAM TO GALISTEO CREEK, NEW MEXICO BE ACCEPTED AS FULFILLING IN PART REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE. Committee on Graduate Work ______________________________________________ ______________________________________________ ______________________________________________ Adviser ______________________________________________ Department Head ii AB ST R A CT O F TH E SI S HYDRAULIC MODELING ANALYSIS OF THE MIDDLE RIO GRANDE FROM COCHITI DAM TO GALISTEO CREEK, NEW MEXICO Sedimentation problems with the Middle Rio Grande have made it a subject of study for several decades for many government agencies involved in its management and maintenance. Since severe bed aggradation in the river began in the late 1800’s, causing severe flooding and destroying farmland, several programs have been developed to restore the river while maintaining water quantity and quality for use downstream. Channelization works, levees, and dams were built in the early 1900’s to reduce flooding, to control sediment concentrations in the river and to promote degradation of the bed. Cochiti Dam, which began operation in 1973, was constructed primarily for flood control and sediment detention. The implementation of these channel structures also had negative effects, including the deterioration of the critical habitats of some endangered species. -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys Cobitis) and Spikedace (Meda Fulgida) in the Southwestern United States
RESEARCH ARTICLE Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States Joseph C. Dysthe1*, Kellie J. Carim1, Yvette M. Paroz2, Kevin S. McKelvey1, Michael K. Young1, Michael K. Schwartz1 1 United States Department of Agriculture, Forest Service, National Genomics Center for Wildlife and Fish Conservation, Rocky Mountain Research Station, Missoula, MT, United States of America, 2 United States a11111 Department of Agriculture, Forest Service, Southwestern Region, Albuquerque, NM, United States of America * [email protected] Abstract OPEN ACCESS Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are legally protected Citation: Dysthe JC, Carim KJ, Paroz YM, McKelvey with the status of Endangered under the U.S. Endangered Species Act and are endemic to KS, Young MK, Schwartz MK (2016) Quantitative the Gila River basin of Arizona and New Mexico. Efficient and sensitive methods for moni- PCR Assays for Detecting Loach Minnow ’ (Rhinichthys cobitis) and Spikedace (Meda fulgida)in toring these species distributions are critical for prioritizing conservation efforts. We devel- the Southwestern United States. PLoS ONE 11(9): oped quantitative PCR assays for detecting loach minnow and spikedace DNA in e0162200. doi:10.1371/journal.pone.0162200 environmental samples. Each assay reliably detected low concentrations of target DNA Editor: Michael Hofreiter, University of York, UNITED without detection of non-target species, including other cyprinid fishes with which they co- KINGDOM occur. Received: April 27, 2016 Accepted: August 18, 2016 Published: September 1, 2016 Copyright: This is an open access article, free of all Introduction copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used Loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) are cyprinid fishes that were by anyone for any lawful purpose. -
Rio Grande National Forest Draft Assessment 5 At-Risk Species
Rio Grande National Forest- Draft Assessment 5 Identifying and Assessing At-risk Species Rio Grande National Forest Draft Assessment 5 Identifying and Assessing At-risk Species Contents Introduction .............................................................................................................................................. 1 Information Sources and Gaps .............................................................................................................. 2 Existing Forest Plan Direction .............................................................................................................. 2 Scale of Analysis (Area of Influence) ................................................................................................... 4 Assessment 5 Development Process ..................................................................................................... 4 Federally Recognized Species .................................................................................................................. 6 Uncompahgre Fritillary Butterfly ......................................................................................................... 6 Black-footed Ferret ............................................................................................................................... 8 Canada Lynx ....................................................................................................................................... 11 New Mexico Meadow Jumping Mouse ............................................................................................. -
Rio Costilla Habitat Improvement Project
Decision Memo Rio Costilla Habitat Improvement Project USDA Forest Service, Southwestern Region Questa Ranger District, Carson National Forest Taos County, New Mexico (Sections 1, 2, 11, 12, 14, and 15 of Township 30 North, Range 15 East) Background An interdisciplinary analysis on this project was conducted and is documented in a project record. Source documents from the project record are incorporated by reference throughout this decision memo by showing the document number in brackets [PR #]. Please refer to Appendix A for the project record index. The Questa Ranger District of the Carson National Forest, in partnership with the New Mexico Department of Game and Fish (NMDGF) and the U.S. Fish and Wildlife Service, proposes to improve in- stream habitat conditions within the Rio Costilla [PR #77, 128]. The Valle Vidal Unit of the Carson National Forest attracts hundreds of anglers annually. The Rio Costilla is the largest stream in the Valle Vidal and a favorite among anglers. Anglers travel to this area in large part to pursue the native Rio Grande cutthroat trout. Long-term operations of the Costilla Reservoir and Dam have channelized the Rio Costilla, which has become inadequate for holding fish during low-flow conditions and through the winter. The Rio Costilla has become shallow and wide in many spots, and future efforts to re-establish self-sustaining populations of Rio Grande cutthroat trout may not be successful without active management. Since 2001, Rio Grande cutthroat trout and other native fish population restoration efforts have been ongoing within the upper Rio Costilla watershed. Restoration efforts in this section of the Rio Costilla have included the construction of the Rio Costilla terminal fish barrier in October 2016. -
United States Department of the Interior U.S. Fish and Wildlife
United States Department of the Interior U.S. Fish and Wildlife Service 2321 West Royal Palm Road, Suite 103 Phoenix, Arizona 85021 Telephone: (602) 242-0210 FAX: (602) 242-2513 AESO/SE 02-21-00-F-0029 October 23, 2003 Memorandum To: Field Manager, Tucson Field Office, Bureau of Land Management, Tucson, Arizona From: Field Supervisor Subject: Biological Opinion: Livestock Grazing on 18 Allotments Along the Middle Gila River Ecosystem This biological opinion responds to your request for consultation with the U.S. Fish and Wildlife Service (FWS) pursuant to section 7 of the Endangered Species Act of 1973 (16 U.S. C. 1531- 1544), as amended (ESA). Your original request was dated November 24, 2000, and received in our office November 27, 2000. Due to changes made in the proposed action, your office resubmitted the biological evaluation on March 12, 2001. Thus, formal consultation commenced on that date. At issue are impacts that may result from the Tucson Field Office’s grazing program in portions of the Middle Gila River Ecosystem, Gila and Pinal counties, Arizona. These impacts may affect the following listed species: southwestern willow flycatcher (Empidonax traillii extimus); cactus ferruginous pygmy-owl (Glaucidium brasilianum cactorum); lesser long-nosed bat (Leptonycteris curasoae yerbabuenae); spikedace (Meda fulgida); and loach minnow (Tiaroga cobitis), and critical habitat designated for the spikedace and loach minnow. The Bureau of Land Management (BLM) requested our concurrence that the proposed action may affect, but is not likely to adversely affect, the Arizona hedgehog cactus (Echinocereus triglochidiatus var. arizonicus) and the bald eagle (Haliaeetus leucocephalus). We concur with the BLM’s determinations for these species. -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES
ECOLOGY of NORTH AMERICAN FRESHWATER FISHES Tables STEPHEN T. ROSS University of California Press Berkeley Los Angeles London © 2013 by The Regents of the University of California ISBN 978-0-520-24945-5 uucp-ross-book-color.indbcp-ross-book-color.indb 1 44/5/13/5/13 88:34:34 AAMM uucp-ross-book-color.indbcp-ross-book-color.indb 2 44/5/13/5/13 88:34:34 AAMM TABLE 1.1 Families Composing 95% of North American Freshwater Fish Species Ranked by the Number of Native Species Number Cumulative Family of species percent Cyprinidae 297 28 Percidae 186 45 Catostomidae 71 51 Poeciliidae 69 58 Ictaluridae 46 62 Goodeidae 45 66 Atherinopsidae 39 70 Salmonidae 38 74 Cyprinodontidae 35 77 Fundulidae 34 80 Centrarchidae 31 83 Cottidae 30 86 Petromyzontidae 21 88 Cichlidae 16 89 Clupeidae 10 90 Eleotridae 10 91 Acipenseridae 8 92 Osmeridae 6 92 Elassomatidae 6 93 Gobiidae 6 93 Amblyopsidae 6 94 Pimelodidae 6 94 Gasterosteidae 5 95 source: Compiled primarily from Mayden (1992), Nelson et al. (2004), and Miller and Norris (2005). uucp-ross-book-color.indbcp-ross-book-color.indb 3 44/5/13/5/13 88:34:34 AAMM TABLE 3.1 Biogeographic Relationships of Species from a Sample of Fishes from the Ouachita River, Arkansas, at the Confl uence with the Little Missouri River (Ross, pers. observ.) Origin/ Pre- Pleistocene Taxa distribution Source Highland Stoneroller, Campostoma spadiceum 2 Mayden 1987a; Blum et al. 2008; Cashner et al. 2010 Blacktail Shiner, Cyprinella venusta 3 Mayden 1987a Steelcolor Shiner, Cyprinella whipplei 1 Mayden 1987a Redfi n Shiner, Lythrurus umbratilis 4 Mayden 1987a Bigeye Shiner, Notropis boops 1 Wiley and Mayden 1985; Mayden 1987a Bullhead Minnow, Pimephales vigilax 4 Mayden 1987a Mountain Madtom, Noturus eleutherus 2a Mayden 1985, 1987a Creole Darter, Etheostoma collettei 2a Mayden 1985 Orangebelly Darter, Etheostoma radiosum 2a Page 1983; Mayden 1985, 1987a Speckled Darter, Etheostoma stigmaeum 3 Page 1983; Simon 1997 Redspot Darter, Etheostoma artesiae 3 Mayden 1985; Piller et al. -
Chapter 4: the Hydrologic System of the Middle Rio Grande Basin
Chapter 4: The hydrologic system of the Middle Rio Grande Basin In discussions of the water resources of an area, the hydrologic system is commonly split into two components for convenience: surface water and ground water. However, in the Middle Rio Grande Basin, as in most other locales, the surface- and ground-water systems are intimately linked through a series of complex interactions. These interactions often make it difficult to recognize the boundary between the two systems. In The Rio Grande is the only river I ever this report, the surface- and ground-water systems are described separately, saw that needed irrigation. –attributed to though one of the goals of the report is to show that they are both parts of Will Rogers the hydrologic system of the Middle Rio Grande Basin and that changes in one often affect the other. As defined earlier, in this report “Middle Rio Grande Basin” refers to the geologic basin defined by the extent of deposits of Cenozoic age along the Rio Grande from about Cochiti Dam to about San Acacia. This definition includes nearly the entire ground-water basin; however, the extent of the surface-water basin is delimited topographically by drainage divides and is consequently somewhat larger than the ground-water basin. Surface-water system The most prominent hydrologic feature in the Middle Rio Grande Basin is the Rio Grande, which flows through the entire length of the basin, generally from north to south. The fifth longest river in the United States, its headwaters are in the mountains of southern Colorado. The Rio Grande is the largest river in New Mexico, with a drainage area of 14,900 square miles where it enters the Middle Rio Grande Basin. -
Pallid Sturgeon Recovery Plan
U.S. Fish & Wildlife Service Revised RECOVERY PLAN for the Pallid Sturgeon (Scaphirhynchus albus) Original Plan Approved: November 1993 Prepared by: Pallid Sturgeon Recovery Coordinator U.S. Fish and Wildlife Service Montana Fish and Wildlife Conservation Office Billings, Montana For Mountain-Prairie Region U.S. Fish and Wildlife Service Denver, CO January 2014 DISCLAIMER Recovery plans delineate reasonable actions that are believed necessary to recover and/or protect listed species. Plans are prepared by the U.S. Fish and Wildlife Service, sometimes with the assistance of recovery teams, contractors, State agencies, and others. Plans are reviewed by the public and subject to additional peer review before they are adopted by the U.S. Fish and Wildlife Service. Objectives will only be attained and funds expended contingent upon appropriations, priorities, and other budgetary constraints. Recovery plans do not obligate other parties to undertake specific tasks. Recovery plans do not necessarily represent the views nor the official positions or approval of any individuals or agencies involved in the plan formulation, other than the U.S. Fish and Wildlife Service. They represent the official position of the U.S. Fish and Wildlife Service only after they have been signed by the Regional Director or Director as approved. Approved recovery plans are subject to modification as dictated by new findings, changes in species’ status, and the completion of recovery tasks. Copies of all documents reviewed in development of the plan are available in the administrative record, located at the U.S. Fish and Wildlife Service’s Montana Fish and Wildlife Conservation Office, Billings, Montana. -
Extinction Rates in North American Freshwater Fishes, 1900–2010 Author(S): Noel M
Extinction Rates in North American Freshwater Fishes, 1900–2010 Author(s): Noel M. Burkhead Source: BioScience, 62(9):798-808. 2012. Published By: American Institute of Biological Sciences URL: http://www.bioone.org/doi/full/10.1525/bio.2012.62.9.5 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Articles Extinction Rates in North American Freshwater Fishes, 1900–2010 NOEL M. BURKHEAD Widespread evidence shows that the modern rates of extinction in many plants and animals exceed background rates in the fossil record. In the present article, I investigate this issue with regard to North American freshwater fishes. From 1898 to 2006, 57 taxa became extinct, and three distinct populations were extirpated from the continent. Since 1989, the numbers of extinct North American fishes have increased by 25%. From the end of the nineteenth century to the present, modern extinctions varied by decade but significantly increased after 1950 (post-1950s mean = 7.5 extinct taxa per decade). -
Water Resources of the Middle Rio Grande 38 Chapter Two
THE MIDDLE RIO GRANDE TODAY 37 Infrastructure and Management of the Middle Rio Grande Leann Towne, U.S. Bureau of Reclamation any entities are involved in water management lands within the Middle Rio Grande valley from M in the Middle Rio Grande valley from Cochiti to Cochiti Dam to the Bosque del Apache National Elephant Butte Reservoir. These entities own and Wildlife Refuge. The four divisions are served by operate various infrastructure in the Middle Rio Middle Rio Grande Project facilities, which consist of Grande valley that are highly interconnected and ulti- the floodway and three diversion dams, more than mately affect water management of the Rio Grande. 780 miles of canals and laterals, and almost 400 miles This paper describes major hydrologic aspects of the of drains. Users are served by direct diversions from Middle Rio Grande valley, including water manage- the Rio Grande and from internal project flows such ment activities of the U.S. Bureau of Reclamation, as drain returns. These irrigation facilities are operated major infrastructure of the Middle Rio Grande Project and maintained by MRGCD. (including the Low Flow Conveyance Channel), and focusing on issues downstream of San Acacia COCHITI DIVISION Diversion Dam. Although other entities such as municipalities have significant water management Project diversions from the Rio Grande begin at responsibilities in the Middle Rio Grande valley, they Cochiti Dam, through two canal headings that serve will not be addressed in this paper. the Cochiti Division. The Cochiti East Side Main and The Middle Rio Grande Conservancy District, a Sile Main canals deliver water to irrigators on both political subdivision of the state of New Mexico, was sides of the Rio Grande.