Photochemistry
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Absolute Fluorescence Quantum Yields Using the FL 6500 Fluorescence Spectrometer
APPLICATION NOTE Fluorescence Spectroscopy Authors: Kathryn Lawson-Wood Steve Upstone Kieran Evans PerkinElmer, Inc. Seer Green, UK Absolute Fluorescence Quantum Yields Using the FL 6500 Introduction Fluorescence quantum yield Fluorescence Spectrometer (ΦF) is a characteristic property of a fluorescent species and is denoted as the ratio of the number of photons emitted through fluorescence, to the number of photons absorbed by the fluorophore (Equation 1). ΦF ultimately relates to the efficiency of the pathways leading to emission of fluorescence (Figure 1), providing the probability of the excited state being deactivated by fluorescence rather than by other competing relaxation processes. The magnitude of ΦF is directly related to the intensity of the observed fluorescence.1 Number of photons emitted through fluorescence ΦF = (1) Number of photons absorbed Fluorescence quantum yield can be measured using two methods: the relative method and the absolute method. In comparison with relative quantum yield measurements, the absolute method is applicable to both solid and solution phase measurements. The ΦF can be determined in a single measurement without the need for a reference standard. It is especially useful for samples which absorb and emit in wavelength regions for which there are no reliable quantum yield standards available.2 The importance of ΦF has been shown in several industries, standard. It is especially useful for samples which absorb and including the research, development and evaluation of audio emit in wavelength regions for which there are no reliable visual equipment, electroluminescent materials (OLED/LED) and quantum yield standards available. This method requires an fluorescent probes for biological assays.3 This application integrating sphere which allows the instrument to collect all of demonstrates the use of the PerkinElmer FL 6500 Fluorescence the photons emitted from the sample. -
Donor-Acceptor Interaction and Photochemistry of Polymethylene-Linked Bichromophores in Solution
9042 J. Am. Chem. Soc. 1996, 118, 9042-9051 Donor-Acceptor Interaction and Photochemistry of Polymethylene-Linked Bichromophores in Solution Song-lei Zhang, Matthew J. Lang, Steven Goodman,† Christopher Durnell, Vlastimil Fidlar,‡ Graham R. Fleming, and Nien-chu C. Yang* Contribution from the Department of Chemistry, UniVersity of Chicago, Chicago, Illinois 60637 ReceiVed July 17, 1996X Abstract: The ground-state and the excited-state spectroscopic properties of four series of polymethylene-linked anthracene-dialkylaniline bichromophores were compared as a probe to the relationship between energetics and distance in photoinduced electron transfer (PET). The results demonstrate that, when the energy level of the charge- transfer (CT) state is lowered below that of the localized excited state by appropriate substituents, there is a strong electron-donor-acceptor (EDA) interaction in the ground state which is absent in other bichromophores. Absorption and fluorescence excitation studies revealed that there is an unusually strong EDA interaction in the ground state of A-2 which is absent in other members in the A series. When A-2 is excited directly into this EDA absorption, it exhibits two CT emissions, one at 490 nm and the other at 605 nm. The quantum yield (τf) and the lifetime (Φf) of the two emissions are dependent on the viscosity of the alkane solvent. The Φf and the τf of the 490 nm emission increased when the solvent viscosity was increased; however, those of the 605 nm emission remained essentially unchanged. The risetime of the 605 nm emission is 420 ps, but that of the 490 nm emission is instrument-function limiting. -
Studies on Fluorescence Efficiency and Photodegradation Of
Laser Chemistry, 2002, Vol. 20(2–4), pp. 99–110 Studies on Fluorescence Efficiency and Photodegradation of Rhodamine 6G Doped PMMA Using a Dual Beam Thermal Lens Technique ACHAMMA KURIAN*, NIBU A GEORGE, BINOY PAUL, V. P. N. NAMPOORI and C. P. G. VALLABHAN International School of Photonics, Cochin University of Science & Technology, Cochin 682022, India (Received11September 2002) In this paper we report the use of the dual beam thermal lens technique as a quantitative method to determine absolute fluorescence quantum efficiency and concentration quenching of fluorescence emission from rhodamine 6G doped Poly(methyl methacrylate) (PMMA), prepared with different concentrations of the dye. A comparison of the present data with that reported in the literature indicates that the observed variation of fluorescence quantum yield with respect to the dye concentration follows a similar profile as in the earlier reported observations on rhodamine 6G in solution. The photodegradation of the dye molecules under cw laser excitation is also studied using the present method. Key words: Thermal lens; Fluorescence quantum yield; Photostability; Dye doped polymer 1 INTRODUCTION From the mid 60s, dye lasers have been attractive sources of coherent tunable radiation because of their unique operational flexibility. The salient features of dye lasers are their tunability, with emission from near ultraviolet to the near infrared. High gain, broad spectral bandwidth enabled pulsed and continuous wave operation. Although dyes have been demonstrated to lase in the solid, liquid or gas phases, liquid solutions of dyes in suitable organic * Corresponding author. Catholicate College, Pathanamthitta 689645, India. E-mail: [email protected] 100 A. KURIAN et al. -
Measurement of Fluorescence Quantum Yields on ISS Instrumentation Using Vinci Yevgen Povrozin and Ewald Terpetschnig
TECHNICAL NOTE Measurement of Fluorescence Quantum Yields on ISS Instrumentation Using Vinci Yevgen Povrozin and Ewald Terpetschnig Introduction The quantum yield Q can also be described by the relative rates of the radiative and non-radiative pathways, which deactivate the excited state: kr Q [1 ] kkr nr where and correspond to radiative and non-radiative processes, respectively. In this equation, kr knr knr describes the sum of the rate constants for the various processes that compete with the emission process. These processes include photochemical, and dissociative processes including other, less well characterized changes that result in a return to the ground state with simultaneous dissipation of the energy of the excited state into heat. These latter processes are collectively called non-radiative transitions and two types have been clearly recognized: intersystem crossing and internal conversion. Intersystem crossing related to the radiationless spin inversion of a singlet state (S1) in the excited state into a triplet state (T1). The luminescence quantum yield is also given as the ratio of the number of photons emitted to the number of photons absorbed by the sample: photonsem Q [ 2] photonsabs While measurements of the “absolute” quantum yield do require more sophisticated instrumentation [1], it is easier to determine the “relative” quantum yield of a fluorophore by comparing it to a standard with a known quantum yield. Some of the most common standards are listed in table below: Conditions for Quantum Yield [Q.Y.] Q.Y. Excitation Q.Y. Ref. Standards [nm] [%] Measurements Cy3 4 PBS 540 2 Cy5 27 PBS 620 2 Cresyl Violet 53 Methanol 580 3 1 ISS TECHNICAL NOTE Conditions for Quantum Yield [Q.Y.] Q.Y. -
C-2 Ch 2 & 3 Atoms & Molecules
Molecular and Supramolecular Photochemistry Modern Molecular Photochemistry of Organic Molecules Or Principles of Photochemistry N. J. Turro, V. Ramamurthy and J. C. Scaiano Chapters 1 & 2 Photochemistry Interaction of Light with Matter (Molecules) • Organic Photochemistry • Inorganic Photochemistry • Photobiology What is the difference between thermochemistry and photochemistry? • Mode of activation • Activated by collisions (thermo) • Activated by light (photo) • Selectivity in activation • Entire molecule gets activated • Only the chromophore that absorbs the light gets activated • Energy distribution • Energy used for vibrational/rotational transition • Energy used for electronic transition only Visualization of Thermal Reactions • Transition state connects a single reactant to a single product (intermediate) and it is a saddle point along the reaction course. • Collisions are a reservoir of continuous energy (~ 0.6 kcal/mol per impact). • Collisions can add or remove energy from a system. • Concerned with a single surface. Visualization of Photochemical Reactions We need to deal with two surfaces (ground and excited state. Adiabatic Diabatic Photochemistry starts with interaction of a Photon with a Molecule • What is a photon? • What is a molecule? • How do they interact? • What are the consequences of interaction? The Basic Laws of Photochemistry Grotthuss-Draper law The First Law of Photochemistry: light must be absorbed for photochemistry to occur. Grotthus Drapper Stark-Einstein law The Second Law of Photochemistry: for each photon of light absorbed by a chemical system, only one molecule is activated for a photochemical Stark Einstein reaction. The Light Paradigm (500 BC-1850 AD) 500 2018 BC AD 55 BC 1000 1500 1700 Lucretius Newton (1643-1727) Maxwell (1831-1879) Particles! Waves! …but then came the 1900s - new people, tools, and paradigms! Paradigm 1800s: Light consists of waves (energy propagated by waves): Energy is spread over space like a liquid. -
An Overview of Snow Photochemistry: Evidence, Mechanisms and Impacts
Atmos. Chem. Phys., 7, 4329–4373, 2007 www.atmos-chem-phys.net/7/4329/2007/ Atmospheric © Author(s) 2007. This work is licensed Chemistry under a Creative Commons License. and Physics An overview of snow photochemistry: evidence, mechanisms and impacts A. M. Grannas1, A. E. Jones2, J. Dibb3, M. Ammann4, C. Anastasio5, H. J. Beine6, M. Bergin7, J. Bottenheim8, C. S. Boxe9, G. Carver10, G. Chen11, J. H. Crawford11, F. Domine´12, M. M. Frey12,13, M. I. Guzman´ 9,14, D. E. Heard15, D. Helmig16, M. R. Hoffmann9, R. E. Honrath17, L. G. Huey18, M. Hutterli2, H. W. Jacobi19, P. Klan´ 20, B. Lefer29, J. McConnell21, J. Plane15, R. Sander22, J. Savarino12, P. B. Shepson23, W. R. Simpson24, J. R. Sodeau25, R. von Glasow26, 27, R. Weller19, E. W. Wolff2, and T. Zhu28 1Department of Chemistry, Villanova University, Villanova, PA 19085, USA 2British Antarctic Survey, Natural Environment Research Council, Cambridge, CB3 0ET, UK 3Institute for the Study of Earth, Oceans and Space, University of New Hampshire, Durham, NH 03824, USA 4Laboratory for Radio- and Environmental Chemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland 5Department of Land, Air & Water Resources, University of California at Davis, Davis, CA 95616, USA 6Consiglio Nazionale delle Ricerche – Istituto Inquinamento Atmosferico (C.N.R. – I.I.A); Via Salaria Km 29,3; 00016 Monterotondo Scalo, Roma, Italy 7School of Civil and Environmental Engineering and School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA 8Air Quality Research Branch, -
Photoremovable Protecting Groups Used for the Caging of Biomolecules
1 1 Photoremovable Protecting Groups Used for the Caging of Biomolecules 1.1 2-Nitrobenzyl and 7-Nitroindoline Derivatives John E.T. Corrie 1.1.1 Introduction 1.1.1.1 Preamble and Scope of the Review This chapter covers developments with 2-nitrobenzyl (and substituted variants) and 7-nitroindoline caging groups over the decade from 1993, when the author last reviewed the topic [1]. Other reviews covered parts of the field at a similar date [2, 3], and more recent coverage is also available [4–6]. This chapter is not an exhaustive review of every instance of the subject cages, and its principal focus is on the chemistry of synthesis and photocleavage. Applications of indi- vidual compounds are only briefly discussed, usually when needed to put the work into context. The balance between the two cage types is heavily slanted to- ward the 2-nitrobenzyls, since work with 7-nitroindoline cages dates essentially from 1999 (see Section 1.1.3.2), while the 2-nitrobenzyl type has been in use for 25 years, from the introduction of caged ATP 1 (Scheme 1.1.1) by Kaplan and co-workers [7] in 1978. Scheme 1.1.1 Overall photolysis reaction of NPE-caged ATP 1. Dynamic Studies in Biology. Edited by M. Goeldner, R. Givens Copyright © 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim ISBN: 3-527-30783-4 2 1 Photoremovable Protecting Groups Used for the Caging of Biomolecules 1.1.1.2 Historical Perspective The pioneering work of Kaplan et al. [7], although preceded by other examples of 2-nitrobenzyl photolysis in synthetic organic chemistry, was the first to apply this to a biological problem, the erythrocytic Na:K ion pump. -
Two-Photon Excitation Fluorescence Microscopy
P1: FhN/ftt P2: FhN July 10, 2000 11:18 Annual Reviews AR106-15 Annu. Rev. Biomed. Eng. 2000. 02:399–429 Copyright c 2000 by Annual Reviews. All rights reserved TWO-PHOTON EXCITATION FLUORESCENCE MICROSCOPY PeterT.C.So1,ChenY.Dong1, Barry R. Masters2, and Keith M. Berland3 1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139; e-mail: [email protected] 2Department of Ophthalmology, University of Bern, Bern, Switzerland 3Department of Physics, Emory University, Atlanta, Georgia 30322 Key Words multiphoton, fluorescence spectroscopy, single molecule, functional imaging, tissue imaging ■ Abstract Two-photon fluorescence microscopy is one of the most important re- cent inventions in biological imaging. This technology enables noninvasive study of biological specimens in three dimensions with submicrometer resolution. Two-photon excitation of fluorophores results from the simultaneous absorption of two photons. This excitation process has a number of unique advantages, such as reduced specimen photodamage and enhanced penetration depth. It also produces higher-contrast im- ages and is a novel method to trigger localized photochemical reactions. Two-photon microscopy continues to find an increasing number of applications in biology and medicine. CONTENTS INTRODUCTION ................................................ 400 HISTORICAL REVIEW OF TWO-PHOTON MICROSCOPY TECHNOLOGY ...401 BASIC PRINCIPLES OF TWO-PHOTON MICROSCOPY ..................402 Physical Basis for Two-Photon Excitation ............................ -
Glossary of Terms Used in Photochemistry, 3Rd Edition (IUPAC
Pure Appl. Chem., Vol. 79, No. 3, pp. 293–465, 2007. doi:10.1351/pac200779030293 © 2007 IUPAC INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY ORGANIC AND BIOMOLECULAR CHEMISTRY DIVISION* SUBCOMMITTEE ON PHOTOCHEMISTRY GLOSSARY OF TERMS USED IN PHOTOCHEMISTRY 3rd EDITION (IUPAC Recommendations 2006) Prepared for publication by S. E. BRASLAVSKY‡ Max-Planck-Institut für Bioanorganische Chemie, Postfach 10 13 65, 45413 Mülheim an der Ruhr, Germany *Membership of the Organic and Biomolecular Chemistry Division Committee during the preparation of this re- port (2003–2006) was as follows: President: T. T. Tidwell (1998–2003), M. Isobe (2002–2005); Vice President: D. StC. Black (1996–2003), V. T. Ivanov (1996–2005); Secretary: G. M. Blackburn (2002–2005); Past President: T. Norin (1996–2003), T. T. Tidwell (1998–2005) (initial date indicates first time elected as Division member). The list of the other Division members can be found in <http://www.iupac.org/divisions/III/members.html>. Membership of the Subcommittee on Photochemistry (2003–2005) was as follows: S. E. Braslavsky (Germany, Chairperson), A. U. Acuña (Spain), T. D. Z. Atvars (Brazil), C. Bohne (Canada), R. Bonneau (France), A. M. Braun (Germany), A. Chibisov (Russia), K. Ghiggino (Australia), A. Kutateladze (USA), H. Lemmetyinen (Finland), M. Litter (Argentina), H. Miyasaka (Japan), M. Olivucci (Italy), D. Phillips (UK), R. O. Rahn (USA), E. San Román (Argentina), N. Serpone (Canada), M. Terazima (Japan). Contributors to the 3rd edition were: A. U. Acuña, W. Adam, F. Amat, D. Armesto, T. D. Z. Atvars, A. Bard, E. Bill, L. O. Björn, C. Bohne, J. Bolton, R. Bonneau, H. -
Lifetime and Fluorescence Quantum Yield of Two Fluorescein-Amino Acid-Based Compounds in Different Organic Solvents and Gold Colloidal Suspensions
chemosensors Article Lifetime and Fluorescence Quantum Yield of Two Fluorescein-Amino Acid-Based Compounds in Different Organic Solvents and Gold Colloidal Suspensions Viviane Pilla 1,2,*, Augusto C. Gonçalves 1,3, Alcindo A. Dos Santos 3 and Carlos Lodeiro 1,4 ID 1 BIOSCOPE Group, LAQV-REQUIMTE, Chemistry Department, Faculty of Science and Technology, University NOVA of Lisbon, 2829-516 Caparica, Portugal; [email protected] (A.C.G.); [email protected] (C.L.) 2 Instituto de Física, Universidade Federal de Uberlândia-UFU, Av. João Naves de Ávila 2121, 38400-902 Uberlândia, Brazil 3 Instituto de Química, Universidade de São Paulo-USP, Av. Prof. Lineu Prestes 748, CxP 26077, 05508-000 São Paulo, Brazil; [email protected] 4 Proteomass Scientific Society, Rua dos Inventores, Madan Park, 2829-516 Caparica, Portugal * Correspondence: [email protected] Received: 11 May 2018; Accepted: 28 June 2018; Published: 30 June 2018 Abstract: Fluorescein and its derivatives are yellowish-green emitting dyes with outstanding potential in advanced molecular probes for different applications. In this work, two fluorescent compounds containing fluorescein and an amino acid residue (compounds 1 and 2) were photophysically explored. Compounds 1 and 2 were previously synthesized via ester linkage between fluorescein ethyl ester and Boc-ser (TMS)-OH or Boc-cys(4-methyl benzyl)-OH. Studies on the time-resolved fluorescence lifetime and relative fluorescence quantum yield (φ) were performed for 1 and 2 diluted in acetonitrile, ethanol, dimethyl sulfoxide, and tetrahydrofuran solvents. The discussion considered the dielectric constants of the studied solvents (range between 7.5 and 47.2) and the photophysical parameters. -
Spectroscopy and Photochemistry of Astrophysically-Relevant Molecules of the Cyanoactylene Family Urszula Szczepaniak
Spectroscopy and photochemistry of astrophysically-relevant molecules of the cyanoactylene family Urszula Szczepaniak To cite this version: Urszula Szczepaniak. Spectroscopy and photochemistry of astrophysically-relevant molecules of the cyanoactylene family. Chemical Physics [physics.chem-ph]. Université Paris Saclay (COmUE); Insty- tut chemii fizycznej (Pologne), 2017. English. NNT : 2017SACLS128. tel-01562041 HAL Id: tel-01562041 https://tel.archives-ouvertes.fr/tel-01562041 Submitted on 13 Jul 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT: 2017SACLXXXX Urszula Szczepaniak PhD Thesis Spectroscopy and photochemistry of astrophysically-relevant molecules of the cyanoacetylene family Supervisor: Prof. dr hab. Robert Kołos Co-Supervisor: Dr hab. Claudine Crépin-Gilbert, Directrice de Recherches au CNRS This work was prepared in the frame of joint Polish-French programme cotutelle: at International Doctoral Studies at the Institute of Physical Chemistry, Polish Academy of Sciences, ul. Kasprzaka 44/52, 01-224 Warsaw, POLAND and at Université Paris Saclay, Université Paris Sud - Paris XI, ÉCOLE DOCTORALE No 572: Ondes et Matière, DISCIPLINE: Physique; Institut des Sciences Moléculaires d'Orsay, Bat. 210, Domaine de l'Université de Paris Sud, 91400 Orsay FRANCE. Doctoral committee: Prof. dr hab. -
Abiogenesis and Photostimulated Heterogeneous Reactions in The
Abiogenesis and Photostimulated Heterogeneous synthesize organic species in Interstellar Space on the Reactions in the Interstellar Medium and in the surface of dust particles (as they were on primitive Earth). Primitive Earth’s Atmosphere. Some peculiar features of heterogeneous photocatalytic Relevance to the Genesis of Life systems, namely (i) the considerable red shift of the spectral range of a given photoreaction compared with N. Serpone,1, 2 A. Emeline,1 V. Otroshchenko,3 one in homogeneous phase and (ii) the effect of spectral and V. Ryabchuk 4 selectivity of photocatalysts (5), favor the synthesis of 1 Department of Chemistry & Biochemistry, Concordia organic substrates under the above-mentioned natural University, Montreal (QC), Canada H3G 1M8. conditions. The first feature utilizes a considerably larger 2 Dipartimento di Chimica Organica, Universita di Pavia, fraction of Solar Energy than is otherwise possible in Pavia, Italia. homogeneous photochemical reactions. The second 3 Bach Institute of Biochemistry, Russian Academy of feature influences the dependence of the relative chemical Sciences, Moscow, Russia. yields of different products of a given reaction on the 4 Department of Physics, University of St.-Petersburg, wavelength of the actinic radiation. In particular, the St. Petersburg 198504, Russia. products of complete and partial oxidation of methane and other hydrocarbons result principally from the Studies of micrometeoritic particles captured by Earth photoexcitation of metal-oxide photocatalysts in the (i.e. ) absorption bands (strong at different geological times and discovered in Antarctica fundamental intrinsic have deduced that many organic substances necessary for absorption of UV and of blue light). More complex the Origin of Life on Earth are synthesized in Interstellar organic compounds are formed under irradiation of the catalysts in the absorption bands (weak to Space and are subsequently transported to Earth by extrinsic meteorites, comets, and cosmic dust (1).