Oxygenic and Anoxygenic Microorganism
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Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide
antioxidants Review Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide Ivan Kushkevych 1,* , Veronika Bosáková 1,2 , Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 3,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (V.B.); [email protected] (M.V.) 2 Department of Biology, Faculty of Medicine, Masaryk University, 62500 Brno, Czech Republic 3 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Vienna, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: Hydrogen sulfide is a toxic compound that can affect various groups of water microorgan- isms. Photolithotrophic sulfur bacteria including Chromatiaceae and Chlorobiaceae are able to convert inorganic substrate (hydrogen sulfide and carbon dioxide) into organic matter deriving energy from photosynthesis. This process takes place in the absence of molecular oxygen and is referred to as anoxygenic photosynthesis, in which exogenous electron donors are needed. These donors may be reduced sulfur compounds such as hydrogen sulfide. This paper deals with the description of this metabolic process, representatives of the above-mentioned families, and discusses the possibility using anoxygenic phototrophic microorganisms for the detoxification of toxic hydrogen sulfide. Moreover, their general characteristics, morphology, metabolism, and taxonomy are described as Citation: Kushkevych, I.; Bosáková, well as the conditions for isolation and cultivation of these microorganisms will be presented. V.; Vítˇezová,M.; Rittmann, S.K.-M.R. -
Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-Rich, Geothermal Spring 2 3 Lewis M
bioRxiv preprint doi: https://doi.org/10.1101/428698; this version posted September 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring 2 3 Lewis M. Ward1,2,3*, Airi Idei4, Mayuko Nakagawa2,5, Yuichiro Ueno2,5,6, Woodward W. 4 Fischer3, Shawn E. McGlynn2* 5 6 1. Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138 USA 7 2. Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan 8 3. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 9 91125 USA 10 4. Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, 11 Japan 12 5. Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo, 13 152-8551, Japan 14 6. Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth 15 Science and Technology, Natsushima-cho, Yokosuka 237-0061, Japan 16 Correspondence: [email protected] or [email protected] 17 18 Abstract 19 Hydrothermal systems, including terrestrial hot springs, contain diverse and systematic 20 arrays of geochemical conditions that vary over short spatial scales due to progressive interaction 21 between the reducing hydrothermal fluids, the oxygenated atmosphere, and in some cases 22 seawater. At Jinata Onsen, on Shikinejima Island, Japan, an intertidal, anoxic, iron- and 23 hydrogen-rich hot spring mixes with the oxygenated atmosphere and sulfate-rich seawater over 24 short spatial scales, creating an enormous range of redox environments over a distance ~10 m. -
Detection of Purple Sulfur Bacteria in Purple and Non-Purple Dairy Wastewaters
Published September 16, 2015 Journal of Environmental Quality TECHNICAL REPORTS environmental microbiology Detection of Purple Sulfur Bacteria in Purple and Non-purple Dairy Wastewaters Robert S. Dungan* and April B. Leytem hototrophic microorganisms, which reside Abstract in aquatic, benthic, and terrestrial environments, contain The presence of purple bacteria in manure storage lagoons is pigments that allow them to use light as an energy source. often associated with reduced odors. In this study, our objec- PAnoxygenic photosynthesis among prokaryotes (in contrast to tives were to determine the occurrence of purple sulfur bacteria oxygenic photosynthesis) occurs in purple and green bacteria (PSB) in seven dairy wastewater lagoons and to identify possible linkages between wastewater properties and purple blooms. but does not result in the production of oxygen (Madigan and Community DNA was extracted from composited wastewater Martinko, 2006). Anoxyphototrophs, such as purple sulfur samples, and a conservative 16S rRNA gene sequence within bacteria (PSB) and some purple nonsulfur bacteria (PNSB), Chromatiaceae and pufM genes found in both purple sulfur and use reduced sulfur compounds (e.g., hydrogen sulfide [H2S], nonsulfur bacteria was amplified. Analysis of the genes indicated elemental S), thiosulfate, and molecular hydrogen as electron that all of the lagoons contained sequences that were 92 to 97% similar with Thiocapsa roseopersicina. Sequences from a few la- donors in photosynthesis (Dilling et al., 1995; Asao et al., 2007). goons were also found to be similar with other PSB, such as Mari- Purple sulfur bacteria can also photoassimilate a number of chromatium sp. (97%), Thiolamprovum pedioforme (93–100%), simple organic compounds in the presence of sulfide, including and Thiobaca trueperi (95–98%). -
Diversity of Anoxygenic Phototrophs in Contrasting Extreme Environments
ÓäÎ ÛiÀÃÌÞÊvÊÝÞ}iVÊ* ÌÌÀ« ÃÊÊ ÌÀ>ÃÌ}Ê ÝÌÀiiÊ ÛÀiÌà -ICHAEL4-ADIGAN \$EBORAH/*UNG\%LIZABETH!+ARR 7-ATTHEW3ATTLEY\,AURIE!!CHENBACH\-ARCEL4*VANDER-EER $EPARTMENTOF-ICROBIOLOGY 3OUTHERN)LLINOIS5NIVERSITY #ARBONDALE $EPARTMENTOF-ICROBIOLOGY /HIO3TATE5NIVERSITY #OLUMBUS $EPARTMENTOF-ARINE"IOGEOCHEMISTRYAND4OXICOLOGY .ETHERLANDS)NSTITUTEFOR3EA2ESEARCH.)/: $EN"URG 4EXEL 4HE.ETHERLANDS #ORRESPONDING!UTHOR $EPARTMENTOF-ICROBIOLOGY 3OUTHERN)LLINOIS5NIVERSITY #ARBONDALE ), 0HONE&AX% MAILMADIGAN MICROSIUEDU Óä{ "/ ,Ê ""9Ê Ê " -/,9Ê Ê9 "7-/" Ê /" Ê*, -/, /ÊÊ 4HISCHAPTERDESCRIBESTHEGENERALPROPERTIESOFSEVERALANOXYGENICPHOTOTROPHICBACTERIAISOLATEDFROMEXTREMEENVIRONMENTS 4HESEINCLUDEPURPLEANDGREENSULFURBACTERIAFROM9ELLOWSTONEAND.EW:EALANDHOTSPRINGS ASWELLASPURPLENONSULFUR BACTERIAFROMAPERMANENTLYFROZEN!NTARCTICLAKE4HECOLLECTIVEPROPERTIESOFTHESEEXTREMOPHILICBACTERIAHAVEYIELDEDNEW INSIGHTSINTOTHEADAPTATIONSNECESSARYTOCARRYOUTPHOTOSYNTHESISINCONSTANTLYHOTORCOLDENVIRONMENTS iÞÊ7À`à Ì>ÀVÌVÊ ÀÞÊ6>iÞà ÀL>VÕÕÊ ÀLÕ®Ê Ìi«`Õ «ÕÀ«iÊL>VÌiÀ> , `viÀ>ÝÊ>Ì>ÀVÌVÕà ,ÃiyiÝÕÃÊë° / iÀV À>ÌÕÊÌi«`Õ Diversity of Anoxygenic Phototrophs 205 1.0 INTRODUCTION Antarctic purple bacteria were enriched using standard Anoxygenic phototrophic bacteria inhabit a variety liquid enrichment methods (Madigan 1988) from the of extreme environments, including thermal, polar, water column of Lake Fryxell, a permanently frozen lake hypersaline, acidic, and alkaline aquatic and terrestrial in the Taylor Valley, McMurdo Dry Valleys, Antarctica habitats (Madigan 2003). Typically, one finds -
Ocean Primary Production
Learning Ocean Science through Ocean Exploration Section 6 Ocean Primary Production Photosynthesis very ecosystem requires an input of energy. The Esource varies with the system. In the majority of ocean ecosystems the source of energy is sunlight that drives photosynthesis done by micro- (phytoplankton) or macro- (seaweeds) algae, green plants, or photosynthetic blue-green or purple bacteria. These organisms produce ecosystem food that supports the food chain, hence they are referred to as primary producers. The balanced equation for photosynthesis that is correct, but seldom used, is 6CO2 + 12H2O = C6H12O6 + 6H2O + 6O2. Water appears on both sides of the equation because the water molecule is split, and new water molecules are made in the process. When the correct equation for photosynthe- sis is used, it is easier to see the similarities with chemo- synthesis in which water is also a product. Systems Lacking There are some ecosystems that depend on primary Primary Producers production from other ecosystems. Many streams have few primary producers and are dependent on the leaves from surrounding forests as a source of food that supports the stream food chain. Snow fields in the high mountains and sand dunes in the desert depend on food blown in from areas that support primary production. The oceans below the photic zone are a vast space, largely dependent on food from photosynthetic primary producers living in the sunlit waters above. Food sinks to the bottom in the form of dead organisms and bacteria. It is as small as marine snow—tiny clumps of bacteria and decomposing microalgae—and as large as an occasional bonanza—a dead whale. -
Evolution of Oxygenic Photosynthesis
EA44CH24-Fischer ARI 17 May 2016 19:44 ANNUAL REVIEWS Further Click here to view this article's online features: • Download figures as PPT slides • Navigate linked references • Download citations Evolution of Oxygenic • Explore related articles • Search keywords Photosynthesis Woodward W. Fischer, James Hemp, and Jena E. Johnson Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California 91125; email: wfi[email protected] Annu. Rev. Earth Planet. Sci. 2016. 44:647–83 Keywords First published online as a Review in Advance on Great Oxidation Event, photosystem II, chlorophyll, oxygen evolving May 11, 2016 complex, molecular evolution, Precambrian The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The origin of oxygenic photosynthesis was the most important metabolic 10.1146/annurev-earth-060313-054810 innovation in Earth history. It allowed life to generate energy and reducing Copyright c 2016 by Annual Reviews. power directly from sunlight and water, freeing it from the limited resources All rights reserved of geochemically derived reductants. This greatly increased global primary productivity and restructured ecosystems. The release of O2 as an end prod- Access provided by California Institute of Technology on 07/14/16. For personal use only. Annu. Rev. Earth Planet. Sci. 2016.44:647-683. Downloaded from www.annualreviews.org uct of water oxidation led to the rise of oxygen, which dramatically altered the redox state of Earth’s atmosphere and oceans and permanently changed all major biogeochemical cycles. Furthermore, the biological availability of O2 allowed for the evolution of aerobic respiration and novel biosynthetic pathways, facilitating much of the richness we associate with modern biology, including complex multicellularity. -
Photosynthesis Is Widely Distributed Among Proteobacteria As Demonstrated by the Phylogeny of Puflm Reaction Center Proteins
fmicb-08-02679 January 20, 2018 Time: 16:46 # 1 ORIGINAL RESEARCH published: 23 January 2018 doi: 10.3389/fmicb.2017.02679 Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins Johannes F. Imhoff1*, Tanja Rahn1, Sven Künzel2 and Sven C. Neulinger3 1 Research Unit Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany, 2 Max Planck Institute for Evolutionary Biology, Plön, Germany, 3 omics2view.consulting GbR, Kiel, Germany Two different photosystems for performing bacteriochlorophyll-mediated photosynthetic energy conversion are employed in different bacterial phyla. Those bacteria employing a photosystem II type of photosynthetic apparatus include the phototrophic purple bacteria (Proteobacteria), Gemmatimonas and Chloroflexus with their photosynthetic relatives. The proteins of the photosynthetic reaction center PufL and PufM are essential components and are common to all bacteria with a type-II photosynthetic apparatus, including the anaerobic as well as the aerobic phototrophic Proteobacteria. Edited by: Therefore, PufL and PufM proteins and their genes are perfect tools to evaluate the Marina G. Kalyuzhanaya, phylogeny of the photosynthetic apparatus and to study the diversity of the bacteria San Diego State University, United States employing this photosystem in nature. Almost complete pufLM gene sequences and Reviewed by: the derived protein sequences from 152 type strains and 45 additional strains of Nikolai Ravin, phototrophic Proteobacteria employing photosystem II were compared. The results Research Center for Biotechnology (RAS), Russia give interesting and comprehensive insights into the phylogeny of the photosynthetic Ivan A. Berg, apparatus and clearly define Chromatiales, Rhodobacterales, Sphingomonadales as Universität Münster, Germany major groups distinct from other Alphaproteobacteria, from Betaproteobacteria and from *Correspondence: Caulobacterales (Brevundimonas subvibrioides). -
Anoxygenic Phototrophic Bacterial Diversity Within Wastewater Stabilization Plant During ‘Red Water’ Phenomenon
Int. J. Environ. Sci. Technol. (2013) 10:837–846 DOI 10.1007/s13762-012-0163-2 ORIGINAL PAPER Anoxygenic phototrophic bacterial diversity within wastewater stabilization plant during ‘red water’ phenomenon A. Belila • I. Fazaa • A. Hassen • A. Ghrabi Received: 22 November 2011 / Revised: 2 October 2012 / Accepted: 21 October 2012 / Published online: 13 February 2013 Ó Islamic Azad University (IAU) 2013 Abstract The molecular diversity of the purple photo- Introduction synthetic bacteria was assessed during temporal pigmen- tation changes in four interconnected wastewater Wastewater stabilization ponds (WSPs) are an extremely stabilization ponds treating domestic wastewater by dena- effective, natural form of wastewater treatment. They turant gel gradient electrophoresis method applying pufM combine simplicity, robustness, low cost, and a very high gene. Results revealed high phylogenetic diversity of the degree of disinfection. WSPs are usually designed as one or purple phototrophic anoxygenic bacteria community char- more series of anaerobic, facultative, and maturation acterized by the presence of the purple non-sulfur, purple ponds. Their low operation and maintenance costs have sulfur, and purple aerobic photosynthetic anoxygenic bac- made them a popular choice for wastewater treatment, teria. This phototrophic bacterial assemblage was domi- particularly in developing countries since there is little nated by the purple non-sulfur bacteria group (59.3 %) need for specialized skills to operate the system. One of the with six different genera followed by the purple sulfur major problems which can cause malfunction of the WSP community (27.8 %) with four genera and finally 12.9 % is the massive growth of purple color producing bacteria of the pufM gene sequences were assigned throughout the (Belila et al. -
An Odd Enrichment for Purple Non-Sulfur Bacteria from Trunk River Yunji Wu // August 18, 2015 MBL Microbial Diversity Course 2015
An odd enrichment for purple non-sulfur bacteria from Trunk River Yunji Wu // August 18, 2015 MBL Microbial Diversity Course 2015 INTRODUCTION Trunk River exhibits a brackish environment with seawater inflow from the Atlantic Ocean into freshwater, and rich organics on the riverbed provides a breeding ground for anaerobic sulfur- cycling microbes. Sulfate from organics can be reduced to sulfide, which can then be re- oxidized to elemental sulfur and back to sulfate. In this environment, we found many examples of intracellular and extracellular elemental sulfur in the form of white films, as in Thiovulum and Thiothrix species. We also found instances of pink and green microbial mats, evidence of phototrophic sulfur and non-sulfur bacteria. The anoxygenic phototrophic bacteria are capable of using light energy and a variety of carbon sources for their growth. They do not produce oxygen, as they do not use H2O as an electron donor, using instead organic compounds, reduced inorganic sulfur compounds, or hydrogen gas. The anoxygenic sulfide-oxidizing bacteria comprise the so-called purple sulfur bacteria (PSB) and green sulfur bacteria (GSB), which grow best under conditions of ~1mM sulfide in infrared light (~800nm) and up to 5mM sulfide in far red light (~650nm), respectively. The investigation in this report concerns primarily an enrichment for purple non-sulfur bacteria (PNSB), which exhibit a wide variety of metabolic strategies. These bacteria can grow photoautotrophically or photoheterotrophically, using a range of organic carbon sources as well as low levels of reduced sulfur compounds as electron donors. MATERIALS & METHODS Inoculation and passaging of initial enrichment A sample of sediment from Trunk River was inoculated into a medium containing 20mM succinate as the carbon source and 250uM sulfate. -
Targeted Illumination Strategies for Hydrogen Production from Purple Non-Sulfur Bacteria
University of Kentucky UKnowledge Theses and Dissertations--Chemical and Materials Engineering Chemical and Materials Engineering 2019 TARGETED ILLUMINATION STRATEGIES FOR HYDROGEN PRODUCTION FROM PURPLE NON-SULFUR BACTERIA John D. Craven University of Kentucky, [email protected] Author ORCID Identifier: https://orcid.org/0000-0001-5057-7703 Digital Object Identifier: https://doi.org/10.13023/etd.2019.332 Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Craven, John D., "TARGETED ILLUMINATION STRATEGIES FOR HYDROGEN PRODUCTION FROM PURPLE NON-SULFUR BACTERIA" (2019). Theses and Dissertations--Chemical and Materials Engineering. 106. https://uknowledge.uky.edu/cme_etds/106 This Master's Thesis is brought to you for free and open access by the Chemical and Materials Engineering at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Chemical and Materials Engineering by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known. -
Some Physiological Studies of the Photosynthetic
SOME PHYSIOLOGICAL STUDIES OF THE PHOTOSYNTHETIC AND DARK METABOLISM OF PURPLE SULFUR BACTERIA DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy In the Graduate School of the Ohio State University by JOHN JACOB TAYLOR, B, Sc., M. Sc. The Ohio State University 1957 Approved byi -4 ^ {■ ■/[ CL-t'-H.'&C Adviser Department of Bacteriology ACKNOWLEDGMENT I wish to express my appreciation and gratitude to Dr. Chester I. Randles for his assistance and timely guidance throughout this investigation. ii TABLE OP CONTENTS INTRODUCTION ............................................... 1 LITERATURE R E V I E W ........................................ 4 MATERIALS AND METHODS O r g a n i s m s .............................. 11 Medium ................................... ...oil Cultures ..... ................ ...... 12 Sulfate Determination * ..........................14 Patty Acid Determination ........... 14 Determination of Sulfhydryl Compounds ..... 15 Determination of Carbon Dioxide Uptake .... 16 RESULTS Characterization Studies: Oxidation of Intracellular sulfur .... 19 Nitrogen-fixing cultures ............ ...23 Fatty acid analysis of filtrates ..... 23 Growth on sulfur compounds ........ 24 Carbon Dioxide Fixation (Illuminated) ..... 27 Carbon Dioxide Fixation (Non-Illuminated) . 33 DISCUSSION ................................................ 38 SUMMARY .................................................. 59 HI BLIOGRAPHY . ........................... 63 iii INTRODUCTION With the definition and elaboration -
Distribution and Diversity of Bacterial Chemolithotrophs in Marine and Freshwater Sediments Lisa M
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 5-2006 Distribution and Diversity of Bacterial Chemolithotrophs in Marine and Freshwater Sediments Lisa M. Nigro Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Environmental Microbiology and Microbial Ecology Commons, and the Marine Biology Commons Recommended Citation Nigro, Lisa M., "Distribution and Diversity of Bacterial Chemolithotrophs in Marine and Freshwater Sediments" (2006). Electronic Theses and Dissertations. 517. http://digitalcommons.library.umaine.edu/etd/517 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. DISTRIBUTION AND DIVERSITY OF BACTERIAL CHEMOLITHOTROPHS IN MARINE AND FRESHWATER SEDIMENTS By Lisa M. Nigro B.S. Rutgers University, 2001 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Microbiology) The Graduate School The University of Maine May, 2006 Advisory Committee: Dr. Gary M. King, Professor of Microbiology and Oceanography, Advisor Dr. Jean MacRae, Assistant Professor of Environmental Engineering Dr. Bryan Dail, Assistant Professor of Soil Microbiology LIBRARY RIGHTS STATEMENT In presenting this thesis in partial fulfillment of the requirements for an advanced degree at The University of Maine, I agree that the Library shall make it freely available for inspection. I further agree that permission for “fair use” copying of this thesis for scholarly purposes may be granted by the Librarian. It is understood that any copying or publication of this thesis for financial gain shall not be allowed without my written permission.