Cyclic Nucleotides, Cyclic Nucleotide Phosphodiesterase, Protein Kinase, and Phosphoprotein Phosphatase in the Central Nervous System of Manduca Sexta

Total Page:16

File Type:pdf, Size:1020Kb

Cyclic Nucleotides, Cyclic Nucleotide Phosphodiesterase, Protein Kinase, and Phosphoprotein Phosphatase in the Central Nervous System of Manduca Sexta AN ABSTRACT OF THE THESIS OF EDWARD ELMO ALBIN for the DOCTOR OF PHILOSOPHY (Name of student) (Degree) in Biochemistry presented on September 10, 1973 (Major) (Date) Title:CYCLIC NUCLEOTIDES, CYCLIC NUCLEOTIDE PHOSPHODIESTERASE, PROTEIN KINASE, AND PHOSPHOPROTEIN PHOSPHATASE IN THE CEN- TRAL NERVOUS SYSTEM OF MANDUCA SEXTA Redacted for privacy Abstract approved: R.W. Newburgh Adenosine 3', 5' -cyclic monophosphate (cyclic AMP, cAMP) and guanosine 3', 5' -cyclic monophosphate (cyclic GMP, cGMP) were quantitated in the central nervous system (CNS) of the insect Manduca sexta by competitive protein binding techniques.The M. sexta CNS was found to contain a strikingly high level of cGMP, about 100-fold greater than that of mammalian brain.The level of cAMP, however, was estimated to be about one-sixth that of mammalian brain.The basal ratio of cGMP/cAMP in the insect CNS was approximately ten, whereas this ratio has been reported to be less than one in a variety of vertebrate and invertebrate tissues.Acetylcholine caused a great elevation of cGMP, but not cAMP, in the M. sexta CNS.Short-term incubation with ecdysterone (insect metamorphosis hormone) promoted the accumulation of both cyclic nucleotides. The existence of cyclic nucleotide- stimulable protein kinases (ATP: protein phosphotransferase, EC 2. 7. 1. 37),a system of en- zymes postulated to be instrumental in the biochemical expression of cAMP and cGMP, was demonstrated in the CNS of both larval and adult M. sexta.At low concentrations, cAMP was a much more effective activator of kinase activity than cGMP,Cyclic AMP lowered the Kmof the CNS kinase for ATP, a phenomenon which has been reported to be unique to nervous tissue in mammals. A number of the enzymological properties of the insect kinase were similar to those reported in the literature for thisenzyme in mammalian tis- sues.This insect CNS was also shown to possess a potent enzyme system, viz. phosphoprotein phosphatase, for the dephosphorylation of the phosphorylated products of kinase.Phosphatase activity was gauged using phosphoprotamine as substrate.Both kinase and phos- phatase activities were found to be enriched in particulate fractions of the CNS. An enzyme system for the destruction of cAMP and cGMP, cyclic nucleotide phosphodiesterase (nucleoside 3', 5' -cyclic phosphate nucleoside 5' -phosphate 31 -phosphohydrolase, EC 3.1. 4< c), was examined in the M. sexta larval and adult CNS.Phosphodiesterase (PDE) was found in both soluble and particulate fractions of the CNS, but highest specific activity PDE was noted in a crude mitochondrial preparation, a fraction presumably containing synaptic elements. PDE was greatly enriched in the brain relative to the other CNS ganglia, and was present at higher levels innervous relative to non- nervous tissues.The hydrolysis of both cAMP and cGMP appeared to be the function of a singleenzyme (or similar isozymes) in the larval CNS.Kinetic evidence suggested that PDE in the insect isa cooperative enzyme and is characterized by non-linear, biphasic double-reciprocal plots. PDE could be effectively inhibited bypre- sumed physiological levels of ATP. Cyclic Nucleotides, Cyclic Nucleotide Phosphodiesterase, Protein Kinase, and Phosphoprotein Phosphatase in the Central Nervous System of Manduca sexta by Edward Elmo Albin A THESIS submitted to Oregon State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 1974 APPROVED: Redacted for privacy Chairman of Department of Biochemistry and Biophysics and Professor of Biochemistry in charge of major Redacted for privacy Dean of Graduate School Date thesis is presented September 10, 1973 Typed by Opal Grossnicklaus for Edward Elmo Albin TABLE OF CONTENTS INTRODUCTION 1 Purpose of the Studies Described in this Thesis 1 Cyclic AMP 3 Synthesis and Degradation of cAMP 3 The Second Messenger Concept 5 Protein Kinases and Phosphoprotein Phosphatase 6 Reactions Catalyzed by Kinases and Phosphatases 6 Turnover of Phosphoprotein Phosphate 7 Cyclic Nucleotide-Dependent Protein Kinases 8 A Fundamental Hypothesis 9 Protein Substrate Specificity of Kinases 10 The Mechanism of Activation of Cyclic Nucleotide-Dependent Protein Kinases 12 Protein Kinase Modulator 14 The Role of Cyclic AMP and Protein Phosphorylation in the Synaptic Transmission of Nerve Impulses 16 Cyclic GMP 22 GENERAL EXPERIMENTAL MATERIALS AND METHODS 29 Materials 29 Insect Cultures 30 Dissection of Insect Nervous Tissues 31 Protein Determination 34 Polyacrylamide Gel Electrophoresis 34 CYCLIC AMP AND CYCLIC GMP IN THE CENTRAL NERVOUS SYSTEM OF M. SEXTA 41 Materials and Methods 42 Materials 42 Tissue Incubation and Cyclic Nucleotide Extraction Procedure 43 Cyclic AMP Assay 44 Cyclic GMP Assay 46 Results and Discussion 47 PROTEIN KINASE IN THE CENTRAL NERVOUS SYSTEM OF M. SEXTA 60 Materials and Methods 62 Materials 62 Enzyme Source for Kinase Assays 62 Assay of Protein Kinase 63 Choice of Protein Substrate 65 Comments on Experimental Technique 66 Results and Discussion 67 Miscellaneous Observations 67 Endogenous Phosphorylation 68 Sulfhydryl Sensitivity 70 Comparison of the Effectiveness of cAMP and cGMP to Activate Soluble Protein Kinase 72 Time Course of Phosphorylation 78 Effect of Varying Enzyme Concentration 78 Effect of Varying the Amount of Histone 81 Kinase Activity as a Function of ATP Concentration 81 Kinase Activities in the Larval and Adult CNS 85 Effects of Bivalent Cations and EDTA 91 Temperance and pH Dependence 9 5 Effects of Salts 98 Abilities of Various Proteins to Serve as Kinase Substrates 101 Effects of Various Compounds on Kinase Activity 105 Protein Kinase Inhibitor 109 Polyacrylamide Disc Gel Electrophoresis 114 Summary 118 PHOSPHOPROTEIN PHOSPHATASE IN THE CENTRAL NERVOUS SYSTEM OF M. SEXTA 120 Introduction 120 Materials and Methods 121 Materials 121 Enzyme Preparation 121 Assay for Phosphoprotein Phosphatase 121 Choice of Substrate 124 Results and Discussion 125 Miscellaneous Observations 125 Time, Enzyme, and Substrate Dependence of Reaction Velocity 126 Sulfhydryl Sensitivity 128 Effects of Salts and Ionic Strength 130 Effects of Bivalent Metals and EDTA 134 Temperature and pH Dependence 140 Effects of Various Compounds on Phosphatase Activity 143 Distribution of Phosphatase Among Soluble and Particulate Fractions 143 CYCLIC NUCLEOTIDE PHOSPHODIESTERASE IN THE CENTRAL NERVOUS SYSTEM OF M. SEXTA 150 Introduction 150 Materials and Methods 161 Mate rials 16 1 Cyclic AMP Phosphodiesterase Assays 163 Assay I Assay II 167 Cyclic GMP Phosphodiesterase Assays 169 General Comments on Phosphodiesterase Assays 171 Collection of Non-neural Tissues 173 CNS Preparations 174 Preparation of Subcellular Fractions from the Larval CNS 178 Ammonium Sulfate Fractionation 179 Activity Stain for Phosphodiesterase in Polyacrylamide Gels 18 1 Results and Discussion 183 Tissue Distribution of Activity 183 Miscellaneous Properties of Larval CNS Phosphodiesterase 185 Phosphodiesterase Activity as a Function of Incubation Time and Concentration of Protein 19 7 Ammonium Sulfate Precipitation 19 7 Effect of pH and Buffers 20 1 Temperature Dependence of Activity 205 Metal Requirements 207 Inhibition Studies 211 Phosphodiesterase Activities in the Larval and Adult CNS 218 Distribution of Phosphodiesterase Activity Among Larval CNS Ganglia 222 Phosphodiesterase Activities in Larval and Adult Brains 224 Sub cellular Distribution of Phosphodiesterase in the Larval CNS 231 Kinetic Studies 237 Comparison of Phosphodiesterase in the M. sexta With That in Various Tissues 243 Phosphodiesterase Distribution in Polyacrylamide Gels 245 Phosphodiesterase Activators ? 251 Phosphodiesterase Induction 254 General Discussion 259 BIBLIOGRAPHY 267 APPENDIX I 289 APPENDIX II 29 2 APPENDIX III 29 6 ABBREVIATIONS USED IN THE TEXT Ach, acetylcholine Ap( CH2)pp, a, p -methylene -adenosine - 5' -triphosphate ATP, adenosine 5' -triphosphate 32, 32P] ATP - ATP BSA, bovine serum albumin (but)2 cAMP, 6-N-2' -0 - dibutyryl- 3'5'- cyclic-AMP cAMP, adenosine 3', 5' -cyclic-monophosphoric acid cGMP, guanosine 3', 5' -cyclic-monophosphoric acid CNS, central nervous system DTT, dithiothreitol (Cleland' s reagent) EDTA, ethylenediaminetetraacetic acid EGTA, ethyleneglycol-bis-((3-aminoethyl ether)N, N'-tetraacetic acid GTP, guanosine 5'-triphosphate IAA, iodoacetamide Km' Michaelis constant LSC, liquid scintillation counting NEM, N-ethylmaleimide PDE, 3', 5' -cyclic nucleotide phosphodiesterase PHMB, para-hydroxymercuribenzoic acid PMSF, phenylmethylsulfonylfluoride 5, substrate or substrate concentration TCA, trichloroacetic acid Tris, tris-(hydroxymethyl)-arninomethane Vmax,maximum reaction velocity LIST OF FIGURES Figure Page 1, Reactions catalyzed by adenyl cyclase and 4 phosphodiesteras e, 2. Standard curve for the assay of cAMP, 48 3. Standard curve for the assay of cGMP. 49 4. Cyclic nucleotide dependence of soluble histone kinase activity at ATP = 125 p.M. 73 5. Cyclic nucleotide dependence of histone kinase activity at ATP = 12.5 p.M. 74 6. Protein kinase activity as a function of incubation time at various ATP concentrations. 79 7. Dependence of exogenous and endogenous phosphory- lation upon the amount of enzyme. 80 8. Dependence of histone kinase activity upon amount of substrate. 82 9. Kinase activity as a function of ATP concentration. 83 10, Cyclic nucleotide dependence of kinase activity extracted from M. sexta larval CNS membranes by Triton X-100. 89 2+ 11. Kinase activity as a function of Mgconcentration. 93 12. pH dependence of kinase activity in the
Recommended publications
  • Activation and Phosphorylation of the 'Dense-Vesicle' High-Affinity Cyclic AMP Phosphodiesterase by Cyclic AMP-Dependent Protein Kinase
    Biochem. J. (1989) 260, 27-36 (Printed in Great Britain) 27 Activation and phosphorylation of the 'dense-vesicle' high-affinity cyclic AMP phosphodiesterase by cyclic AMP-dependent protein kinase Elaine KILGOUR, Neil G. ANDERSON and Miles D. HOUSLAY Molecular Pharmacology Group, Department of Biochemistry, University of Glasgow, Glasgow G12 8QQ, Scotland, U.K. Incubation of a hepatocyte particulate fraction with ATP and the isolated catalytic unit of cyclic AMP- dependent protein kinase (A-kinase) selectively activated the high-affinity 'dense-vesicle' cyclic AMP phosphodiesterase. Such activation only occurred if the membranes had been pre-treated with Mg2". Mg2" pre-treatment appeared to function by stimulating endogenous phosphatases and did not affect phosphodiesterase activity. Using the antiserum DV4, which specifically immunoprecipitated the 51 and 57 kDa components of the 'dense-vesicle' phosphodiesterase from a detergent-solubilized membrane extract, we isolated a 32P-labelled phosphoprotein from 32P-labelled hepatocytes. MgCl2 treatment of such labelled membranes removed 32P from the immunoprecipitated protein. Incubation of the Mg2+-pre-treated membranes with [32P]ATP and A-kinase led to the time-dependent incorporation of label into the 'dense- vesicle' phosphodiesterase, as detected by specific immunoprecipitation with the antiserum DV4. The time- dependences of phosphodiesterase activation and incorporation of label were similar. It is suggested (i) that phosphorylation of the 'dense-vesicle' phosphodiesterase by A-kinase leads to its activation, and that such a process accounts for the ability of glucagon and other hormones, which increase intracellular cyclic AMP concentrations, to activate this enzyme, and (ii) that an as yet unidentified kinase can phosphorylate this enzyme without causing any significant change in enzyme activity but which prevents activation and phosphorylation of the phosphodiesterase by A-kinase.
    [Show full text]
  • (PDE 1 B 1) Correlates with Brain Regions Having Extensive Dopaminergic Innervation
    The Journal of Neuroscience, March 1994, 14(3): 1251-l 261 Expression of a Calmodulin-dependent Phosphodiesterase lsoform (PDE 1 B 1) Correlates with Brain Regions Having Extensive Dopaminergic Innervation Joseph W. Polli and Randall L. Kincaid Section on Immunology, Laboratory of Molecular and Cellular Neurobiology, National Institute on Alcohol Abuse and Alcoholism, Rockville, Maryland 20852 Cyclic nucleotide-dependent protein phosphorylation plays PDE implies an important physiological role for Ca2+-regu- a central role in neuronal signal transduction. Neurotrans- lated attenuation of CAMP-dependent signaling pathways mitter-elicited increases in cAMP/cGMP brought about by following dopaminergic stimulation. activation of adenylyl and guanylyl cyclases are downre- [Key words: CAMP, cyclase, striatum, dopamine, basal gulated by multiple phosphodiesterase (PDE) enzymes. In ganglia, DARPP-321 brain, the calmodulin (CaM)-dependent isozymes are the major degradative activities and represent a unique point of Cyclic nucleotides, acting as “second messengers”or via direct intersection between the cyclic nucleotide- and calcium effects, regulate a diverse array of neuronal functions, from ion (Ca*+)-mediated second messenger systems. Here we de- channel conductance to gene expression. Hydrolysis of 3’,5’- scribe the distribution of the PDEl Bl (63 kDa) CaM-depen- cyclic nucleotidesto 5’-nucleosidemonophosphates is the major dent PDE in mouse brain. An anti-peptide antiserum to this mechanismfor decreasingintracellular cyclic nucleotide levels. isoform immunoprecipitated -3O-40% of cytosolic PDE ac- This reaction is catalyzed by cyclic nucleotide phosphodiester- tivity, whereas antiserum to PDElA2 (61 kDa isoform) re- ase (PDE) enzymes that constitute a large superfamily (Beavo moved 60-70%, demonstrating that these isoforms are the and Reifsynder, 1990).
    [Show full text]
  • A Novel, Highly Potent and Selective Phosphodiesterase-9 Inhibitor for the Ferrata Storti Foundation Treatment of Sickle Cell Disease
    Red Cell Biology & its Disorders ARTICLE A novel, highly potent and selective phosphodiesterase-9 inhibitor for the Ferrata Storti Foundation treatment of sickle cell disease James G. McArthur,1 Niels Svenstrup,2 Chunsheng Chen,3 Aurelie Fricot,4 Caroline Carvalho,4 Julia Nguyen,3 Phong Nguyen,3 Anna Parachikova,2 Fuad Abdulla,3 Gregory M. Vercellotti,3 Olivier Hermine,4 Dave Edwards,5 Jean-Antoine Ribeil,6 John D. Belcher3 and Thiago T. Maciel4 1Imara Inc., 2nd Floor, 700 Technology Square, Cambridge, MA, USA; 2H. Lundbeck A/S, 3 Haematologica 2020 Ottiliavej 9, 2500 Valby, Denmark; Department of Medicine, Division of Hematology, Oncology and Transplantation, University of Minnesota, Minneapolis, MN, USA; Volume 105(3):623-631 4INSERM UMR 1163, CNRS ERL 8254, Imagine Institute, Laboratory of Excellence GR-Ex, Paris Descartes - Sorbonne Paris Cité University, Paris, France; 5Kinexum, 8830 Glen Ferry Drive, Johns Creek, GA, USA and 6Departments of Biotherapy, Necker Children’s Hospital, Assistance Publique-Hôpitaux de Paris (AP-HP), Paris Descartes- Sorbonne Paris Cité University, Paris, France ABSTRACT he most common treatment for patients with sickle cell disease (SCD) is the chemotherapeutic hydroxyurea, a therapy with Tpleiotropic effects, including increasing fetal hemoglobin (HbF) in red blood cells and reducing adhesion of white blood cells to the vascular endothelium. Hydroxyurea has been proposed to mediate these effects through a mechanism of increasing cellular cGMP levels. An alternative path to increasing cGMP levels in these cells is through the use of phospho- diesterase-9 inhibitors that selectively inhibit cGMP hydrolysis and increase cellular cGMP levels. We have developed a novel, potent and selective phosphodiesterase-9 inhibitor (IMR-687) specifically for the treatment of Correspondence: SCD.
    [Show full text]
  • Regulation of Calmodulin-Stimulated Cyclic Nucleotide Phosphodiesterase (PDE1): Review
    95-105 5/6/06 13:44 Page 95 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 18: 95-105, 2006 95 Regulation of calmodulin-stimulated cyclic nucleotide phosphodiesterase (PDE1): Review RAJENDRA K. SHARMA, SHANKAR B. DAS, ASHAKUMARY LAKSHMIKUTTYAMMA, PONNIAH SELVAKUMAR and ANURAAG SHRIVASTAV Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Cancer Research Division, Saskatchewan Cancer Agency, 20 Campus Drive, Saskatoon SK S7N 4H4, Canada Received January 16, 2006; Accepted March 13, 2006 Abstract. The response of living cells to change in cell 6. Differential inhibition of PDE1 isozymes and its environment depends on the action of second messenger therapeutic applications molecules. The two second messenger molecules cAMP and 7. Role of proteolysis in regulating PDE1A2 Ca2+ regulate a large number of eukaryotic cellular events. 8. Role of PDE1A1 in ischemic-reperfused heart Calmodulin-stimulated cyclic nucleotide phosphodiesterase 9. Conclusion (PDE1) is one of the key enzymes involved in the complex interaction between cAMP and Ca2+ second messenger systems. Some PDE1 isozymes have similar kinetic and 1. Introduction immunological properties but are differentially regulated by Ca2+ and calmodulin. Accumulating evidence suggests that the A variety of cellular activities are regulated through mech- activity of PDE1 is selectively regulated by cross-talk between anisms controlling the level of cyclic nucleotides. These Ca2+ and cAMP signalling pathways. These isozymes are mechanisms include synthesis, degradation, efflux and seque- also further distinguished by various pharmacological agents. stration of cyclic adenosine 3':5'-monophosphate (cAMP) and We have demonstrated a potentially novel regulation of PDE1 cyclic guanosine 3':5'- monophosphate (cGMP) within the by calpain.
    [Show full text]
  • Characterization of Contractile Machinery of Vascular Smooth Muscles in Hypertension
    life Review Characterization of Contractile Machinery of Vascular Smooth Muscles in Hypertension Qunhui Yang * and Masatoshi Hori Department of Veterinary Pharmacology, Graduate School of Agriculture and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-3-5841-7940; Fax: +81-3-5841-8183 Abstract: Hypertension is a key risk factor for cardiovascular disease and it is a growing public health problem worldwide. The pathophysiological mechanisms of vascular smooth muscle (VSM) contrac- tion contribute to the development of hypertension. Calcium (Ca2+)-dependent and -independent signaling mechanisms regulate the balance of the myosin light chain kinase and myosin light chain phosphatase to induce myosin phosphorylation, which activates VSM contraction to control blood pressure (BP). Here, we discuss the mechanism of the contractile machinery in VSM, especially RhoA/Rho kinase and PKC/CPI-17 of Ca2+ sensitization pathway in hypertension. The two signal- ing pathways affect BP in physiological and pathophysiological conditions and are highlighted in pulmonary, pregnancy, and salt-sensitive hypertension. Keywords: vascular smooth muscle contraction; hypertension; CPI-17 Citation: Yang, Q.; Hori, M. 1. Introduction Characterization of Contractile Three types of muscle tissues are found in vertebrates: skeletal muscle, cardiac muscle, Machinery of Vascular Smooth and smooth muscle [1]. Muscle contraction depends on the ATP-driven sliding of highly Muscles in Hypertension. Life 2021, organized arrays of actin filaments against arrays of myosin II filaments [2]. In smooth 11, 702. https://doi.org/10.3390/ muscle, phosphorylation at Thr18/Ser19 of the myosin regulatory light chain results in life11070702 myosin ATPase enzymatic activity that induces actin and myosin attachment to regulate smooth muscle contraction [3,4].
    [Show full text]
  • Phosphodiesterase Inhibitors: Could They Be Beneficial for the Treatment of COVID-19?
    International Journal of Molecular Sciences Review Phosphodiesterase Inhibitors: Could They Be Beneficial for the Treatment of COVID-19? Mauro Giorgi 1,*, Silvia Cardarelli 2, Federica Ragusa 3, Michele Saliola 1, Stefano Biagioni 1, Giancarlo Poiana 1 , Fabio Naro 2 and Mara Massimi 3,* 1 Department of Biology and Biotechnology “Charles Darwin”, Sapienza University of Rome, 00185 Rome, Italy; [email protected] (M.S.); [email protected] (S.B.); [email protected] (G.P.) 2 Department of Anatomical, Histological, Forensic Medicine and Orthopedic Sciences, Sapienza University, 00185 Rome, Italy; [email protected] (S.C.); [email protected] (F.N.) 3 Department of Life, Health and Environmental Sciences, University of L’Aquila, 67100 L’Aquila, Italy; [email protected] * Correspondence: [email protected] (M.G.); [email protected] (M.M.) Received: 10 July 2020; Accepted: 24 July 2020; Published: 27 July 2020 Abstract: In March 2020, the World Health Organization declared the severe acute respiratory syndrome corona virus 2 (SARS-CoV2) infection to be a pandemic disease. SARS-CoV2 was first identified in China and, despite the restrictive measures adopted, the epidemic has spread globally, becoming a pandemic in a very short time. Though there is growing knowledge of the SARS-CoV2 infection and its clinical manifestations, an effective cure to limit its acute symptoms and its severe complications has not yet been found. Given the worldwide health and economic emergency issues accompanying this pandemic, there is an absolute urgency to identify effective treatments and reduce the post infection outcomes. In this context, phosphodiesterases (PDEs), evolutionarily conserved cyclic nucleotide (cAMP/cGMP) hydrolyzing enzymes, could emerge as new potential targets.
    [Show full text]
  • GRAS Notice No. GRN 000728, FDA Has No Questions, Phospholipase C
    .. .. Janet Oesterling Novozymes North America, Inc. 77 Perry Chapel Church Road Franklinton, NC 27525 Re: GRAS Notice No. GRN 000728 Dear Ms. Oesterling: The Food and Drug Administration (FDA, we) completed our evaluation of GRN 000728. We received Novozymes North America, Inc.’s (Novozymes’) notice on August 25, 2017, and filed it on September 8, 2017. We received an amendment containing additional safety information on October 11, 2017. The subject of the notice is phosphoinositide phospholipase C enzyme preparation produced by Bacillus licheniformis expressing a modified synthetic gene encoding a variant of the wild-type phosphoinositide phospholipase C from Pseudomonas sp. 62186 (phosphoinositide phospholipase C enzyme preparation) for use as an enzyme in the degumming of vegetable oils at a maximum level of 1.4 mg Total Organic Solids (TOS)/kg oil. The notice informs us of Novozymes’ view that this use of phosphoinositide phospholipase C enzyme preparation is GRAS through scientific procedures. Commercial enzyme preparations that are used in food processing typically contain an enzyme component that catalyzes the chemical reaction as well as substances used as stabilizers, preservatives, or diluents. Enzyme preparations may also contain components derived from the production organism and from the manufacturing process, e.g., constituents of the fermentation media or the residues of processing aids. Novozymes’ notice provides information about the components in the phosphoinositide phospholipase C enzyme preparation. Per the classification system of enzymes established by the International Union of Biochemistry and Molecular Biology, phosphoinositide phospholipase C is identified by the Enzyme Commission Number 3.1.4.11. The accepted name is phosphoinositide phospholipase C.
    [Show full text]
  • The Characterization of Oligonucleotides and Nucleic Acids Using Ribonuclease H and Mass Spectrometry
    Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1999 The hC aracterization of Oligonucleotides and Nucleic Acids Using Ribonuclease H and Mass Spectrometry. Lenore Marie Polo Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Polo, Lenore Marie, "The hC aracterization of Oligonucleotides and Nucleic Acids Using Ribonuclease H and Mass Spectrometry." (1999). LSU Historical Dissertations and Theses. 6923. https://digitalcommons.lsu.edu/gradschool_disstheses/6923 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter free, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps.
    [Show full text]
  • The Tyrosyl-DNA Phosphodiesterase Tdp1 Is a Member of the Phospholipase D Superfamily
    The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily Heidrun Interthal*, Jeffrey J. Pouliot†, and James J. Champoux*‡ *Department of Microbiology, Box 357242, School of Medicine, University of Washington, Seattle, WA 98195-7242; and †Laboratory of Molecular Biology, National Institute of Mental Health, Building 36, Room 1B08, Bethesda, MD 20892-4034 Communicated by Howard A. Nash, National Institutes of Health, Bethesda, MD, August 15, 2001 (received for review May 14, 2001) The phospholipase D (PLD) superfamily is a diverse group of Yersinia pestis murine toxin substantiates this view and reveals proteins that includes enzymes involved in phospholipid metabo- that the active site nucleophile in the reaction is one of the highly lism, a bacterial toxin, poxvirus envelope proteins, and bacterial conserved histidines of the HKD motif (9, 10). In support of the nucleases. Based on sequence comparisons, we show here that the importance of the histidines and lysines of both HKD motifs, the tyrosyl-DNA phosphodiesterase (Tdp1) that has been implicated in known crystal structures reveal that all four residues are clus- the repair of topoisomerase I covalent complexes with DNA con- tered together in the active center of the enzymes (4, 5). tains two unusual HKD signature motifs that place the enzyme in When a type IB topoisomerase cleaves DNA, the enzyme a distinct class within the PLD superfamily. Mutagenesis studies becomes covalently attached to the DNA through a phosphodi- with the human enzyme in which the invariant histidines and ester bond between a tyrosine residue in the enzyme and the 3Ј lysines of the HKD motifs are changed confirm that these highly end of the cleaved strand (11).
    [Show full text]
  • Protein Phosphatase 1 Inhibitor–1 Mediates the Camp-Dependent Stimulation of the Renal Nacl Cotransporter
    BASIC RESEARCH www.jasn.org Protein Phosphatase 1 Inhibitor–1 Mediates the cAMP-Dependent Stimulation of the Renal NaCl Cotransporter David Penton,1,2 Sandra Moser,1 Agnieszka Wengi,1 Jan Czogalla,1,2 Lena Lindtoft Rosenbaek,3,4 Fritz Rigendinger,1 Nourdine Faresse,1,2 Joana R. Martins ,1,2 Robert A. Fenton,3 Dominique Loffing-Cueni,1 and Johannes Loffing1,2 1Institute of Anatomy, University of Zurich, Zurich, Switzerland; 2Swiss National Centre for Competence in Research “Kidney Control of Homeostasis,” Zurich, Switzerland; 3Department of Biomedicine, Aarhus University, Aarhus, Denmark; and 4Department of Neuroscience, University of Copenhagen, Copenhagen, Denmark ABSTRACT Background A number of cAMP-elevating hormones stimulate phosphorylation (and hence activity) of the NaCl cotransporter (NCC) in the distal convoluted tubule (DCT). Evidence suggests that protein phosphatase 1 (PP1) and other protein phosphatases modulate NCC phosphorylation, but little is known about PP1’srole and the mechanism regulating its function in the DCT. Methods We used ex vivo mouse kidney preparations to test whether a DCT-enriched inhibitor of PP1, protein phosphatase 1 inhibitor–1 (I1), mediates cAMP’seffectsonNCC,andconductedyeast two-hybrid and coimmunoprecipitation experiments in NCC-expressing MDCK cells to explore protein interactions. Results Treating isolated DCTs with forskolin and IBMX increased NCC phosphorylation via a protein kinase A (PKA)–dependent pathway. Ex vivo incubation of mouse kidney slices with isoproterenol, nor- epinephrine, and parathyroid hormone similarly increased NCC phosphorylation. The cAMP-induced stim- ulation of NCC phosphorylation strongly correlated with the phosphorylation of I1 at its PKA consensus phosphorylation site (a threonine residue in position 35). We also found an interaction between NCC and the I1-target PP1.
    [Show full text]
  • Mechanism of Action of Ribonuclease H Isolated from Avian Myeloblastosis Virus and Escherichia Coli* (RNA-Dependent DNA Polymerase/Processive Exonuclease/E
    Proc. Nat. Acad. Sci. USA Vol. 70, No. 2, pp. 466-470, February 1973 Mechanism of Action of Ribonuclease H Isolated from Avian Myeloblastosis Virus and Escherichia coli* (RNA-dependent DNA polymerase/processive exonuclease/E. coli endonuclease) JONATHAN P. LEIS, IRA BERKOWER, AND JERARD HURWITZ Department of Developmental Biology and Cancer, Albert Einstein College of Medicine, Bronx, New York 10461 Communicated by Leon A. Heppel, November 16, 1972 ABSTRACT Purified preparations of RNA-dependent nucleotide kinase (13) were prepared by Drs. R. Silber and DNA polymerase isolated from avian myeloblastosis virus V. G. Malathi. [,y-32P]ATP was purchased from New En- contain RNase H activity. Labeled ribohomopolymers are degraded in the presence of their complementary deoxyri- gland Nuclear; labeled polynucleotides and other nucleotides bopolymer, except [3HJpoly(U).poly(dA). The degradation were from Schwarz/Mann Research or Miles Laboratories, products formed from [3Hpoly(A) . poly(dT) were identified Inc. N-cyclohexyl-N'-3(4-methylmorpholinium)ethyl carbo- as oligonucleotides containing 3'-hydroxyl and 5'-phos- diimide p-toluene sulfonate was from Aldrich Chemical Co. pbate termini, while AMP was not detected. The nuclease has been characterized as a processive exonuclease that All other reagents were described (14). requires ends of poly(A) chains for activity. Exonucleolytic Assay for RNase H. Reaction mixtures (0.05 ml) containing attack occurs in both 5' to 3' and 3' to 5' directions. RNase H has also been purified from E. coli. This nu- 1 4mol of Tris - HCl (pH 8.0), 0.5 umol of MgC12, 0.3 jumol of clease degrades all homoribopolymers tested in the pres- dithioerythritol, 2 ,ug of albumin, 0.52 nmol of poly(dT), ence of their complementary deoxyribopolymers to yield 0.56 nmol of [3H]poly(A), and enzyme were incubated for 30 oligonucleotides with 5'-phosphate and 3'-hydroxyl ter- min at 380.
    [Show full text]
  • The Role of Phosphatidylinositol-Specific Phospholipase-C in Plant Defense Signaling
    The Role of Phosphatidylinositol-Specific Phospholipase-C in Plant Defense Signaling Ahmed M. Abd-El-Haliem Thesis committee Promotor Prof. Dr P.J.G.M. de Wit Professor of Phytopathology Wageningen University Co-promotor Dr M.H.A.J. Joosten Associate professor, Laboratory of Phytopathology Wageningen University Other members Prof. Dr H.J. Bouwmeester, Wageningen University Prof. Dr M.W. Prins, University of Amsterdam Prof. Dr G.C. Angenent, Wageningen University Dr S.H.E.J. Gabriёls, Monsanto Holland BV, Wageningen This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. The Role of Phosphatidylinositol-Specific Phospholipase-C in Plant Defense Signaling Ahmed M. Abd-El-Haliem Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Thursday 23 October 2014 at 11.00 a.m. in the Aula. Ahmed M. Abd-El-Haliem The Role of Phosphatidylinositol-Specific Phospholipase-C in Plant Defense Signaling, 188 pages. PhD thesis, Wageningen University, Wageningen, NL (2014) With references, with summaries in Dutch and English ISBN 978-94-6257-118-1 TABLE OF CONTENTS CHAPTER 1 General Introduction & Thesis Outline 7 CHAPTER 2 Identification of Tomato Phosphatidylinositol-Specific 19 Phospholipase-C (PI-PLC) Family Members and the Role of PLC4 and PLC6 in HR and Disease Resistance CHAPTER 3 Defense Activation
    [Show full text]