Fungal Necrotizing Skin and Soft Tissue Infections
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Candida Auris
microorganisms Review Candida auris: Epidemiology, Diagnosis, Pathogenesis, Antifungal Susceptibility, and Infection Control Measures to Combat the Spread of Infections in Healthcare Facilities Suhail Ahmad * and Wadha Alfouzan Department of Microbiology, Faculty of Medicine, Kuwait University, P.O. Box 24923, Safat 13110, Kuwait; [email protected] * Correspondence: [email protected]; Tel.: +965-2463-6503 Abstract: Candida auris, a recently recognized, often multidrug-resistant yeast, has become a sig- nificant fungal pathogen due to its ability to cause invasive infections and outbreaks in healthcare facilities which have been difficult to control and treat. The extraordinary abilities of C. auris to easily contaminate the environment around colonized patients and persist for long periods have recently re- sulted in major outbreaks in many countries. C. auris resists elimination by robust cleaning and other decontamination procedures, likely due to the formation of ‘dry’ biofilms. Susceptible hospitalized patients, particularly those with multiple comorbidities in intensive care settings, acquire C. auris rather easily from close contact with C. auris-infected patients, their environment, or the equipment used on colonized patients, often with fatal consequences. This review highlights the lessons learned from recent studies on the epidemiology, diagnosis, pathogenesis, susceptibility, and molecular basis of resistance to antifungal drugs and infection control measures to combat the spread of C. auris Citation: Ahmad, S.; Alfouzan, W. Candida auris: Epidemiology, infections in healthcare facilities. Particular emphasis is given to interventions aiming to prevent new Diagnosis, Pathogenesis, Antifungal infections in healthcare facilities, including the screening of susceptible patients for colonization; the Susceptibility, and Infection Control cleaning and decontamination of the environment, equipment, and colonized patients; and successful Measures to Combat the Spread of approaches to identify and treat infected patients, particularly during outbreaks. -
Candida Species Identification by NAA
Candida Species Identification by NAA Background Vulvovaginal candidiasis (VVC) occurs as a result of displacement of the normal vaginal flora by species of the fungal genus Candida, predominantly Candida albicans. The usual presentation is irritation, itching, burning with urination, and thick, whitish discharge.1 VVC accounts for about 17% to 39% of vaginitis1, and most women will be diagnosed with VVC at least once during their childbearing years.2 In simplistic terms, VVC can be classified into uncomplicated or complicated presentations. Uncomplicated VVC is characterized by infrequent symptomatic episodes, mild to moderate symptoms, or C albicans infection occurring in nonpregnant and immunocompetent women.1 Complicated VVC, in contrast, is typified by severe symptoms, frequent recurrence, infection with Candida species other than C albicans, and/or occurrence during pregnancy or in women with immunosuppression or other medical conditions.1 Diagnosis and Treatment of VVC Traditional diagnosis of VVC is accomplished by either: (i) direct microscopic visualization of yeast-like cells with or without pseudohyphae; or (ii) isolation of Candida species by culture from a vaginal sample.1 Direct microscopy sensitivity is about 50%1 and does not provide a species identification, while cultures can have long turnaround times. Today, nucleic acid amplification-based (NAA) tests (eg, PCR) for Candida species can provide high-quality diagnostic information with quicker turnaround times and can also enable investigation of common potential etiologies -
Fungi in Bronchiectasis: a Concise Review
International Journal of Molecular Sciences Review Fungi in Bronchiectasis: A Concise Review Luis Máiz 1, Rosa Nieto 1 ID , Rafael Cantón 2 ID , Elia Gómez G. de la Pedrosa 2 and Miguel Ángel Martinez-García 3,* ID 1 Servicio de Neumología, Unidad de Bronquiectasias y Fibrosis Quística, Hospital Universitario Ramón y Cajal, 28034 Madrid, Spain; [email protected] (L.M.); [email protected] (R.N.) 2 Servicio de Microbiología, Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), 28034 Madrid, Spain; [email protected] (R.C.); [email protected] (E.G.G.d.l.P.) 3 Servicio de Neumología, Hospital Universitario y Politécnico la Fe, 46016 Valencia, Spain * Correspondence: [email protected]; Tel.: +34-60-986-5934 Received: 3 December 2017; Accepted: 31 December 2017; Published: 4 January 2018 Abstract: Although the spectrum of fungal pathology has been studied extensively in immunosuppressed patients, little is known about the epidemiology, risk factors, and management of fungal infections in chronic pulmonary diseases like bronchiectasis. In bronchiectasis patients, deteriorated mucociliary clearance—generally due to prior colonization by bacterial pathogens—and thick mucosity propitiate, the persistence of fungal spores in the respiratory tract. The most prevalent fungi in these patients are Candida albicans and Aspergillus fumigatus; these are almost always isolated with bacterial pathogens like Haemophillus influenzae and Pseudomonas aeruginosa, making very difficult to define their clinical significance. Analysis of the mycobiome enables us to detect a greater diversity of microorganisms than with conventional cultures. The results have shown a reduced fungal diversity in most chronic respiratory diseases, and that this finding correlates with poorer lung function. -
Isolation of Mucorales from Biological Environment and Identification of Rhizopus Among the Isolates Using PCR- RFLP
Journal of Shahrekord University of Medical Sciences doi:10.34172/jsums.2019.17 2019;21(2):98-103 http://j.skums.ac.ir Original Article Isolation of Mucorales from biological environment and identification of Rhizopus among the isolates using PCR- RFLP Mahboobeh Madani1* ID , Mohammadali Zia2 ID 1Department of Microbiology, Falavarjan Branch, Islamic Azad University, Isfahan, Iran 2Department of Basic Science, (Khorasgan) Isfahan Branch, Islamic Azad University, Isfahan, Iran *Corresponding Author: Mahboobeh Madani, Tel: + 989134097629, Email: [email protected] Abstract Background and aims: Mucorales are fungi belonging to the category of Zygomycetes, found much in nature. Culture-based methods for clinical samples are often negative, difficult and time-consuming and mainly identify isolates to the genus level, and sometimes only as Mucorales. Therefore, applying fast and accurate diagnosis methods such as molecular approaches seems necessary. This study aims at isolating Mucorales for determination of Rhizopus genus between the isolates using molecular methods. Methods: In this descriptive observational study, a total of 500 samples were collected from air and different surfaces and inoculated on Sabouraud Dextrose Agar supplemented with chloramphenicol. Then, the fungi belonging to Mucorales were identified and their pure culture was provided. DNA extraction was done using extraction kit and the chloroform method. After amplification, the samples belonging to Mucorales were identified by observing 830 bp bands. For enzymatic digestion, enzyme BmgB1 was applied for identification of Rhizopus species by formation of 593 and 235 bp segments. Results: One hundred pure colonies belonging to Mucorales were identified using molecular methods and after enzymatic digestion, 21 isolates were determined as Rhizopus species. -
MM 0839 REV0 0918 Idweek 2018 Mucor Abstract Poster FINAL
Invasive Mucormycosis Management: Mucorales PCR Provides Important, Novel Diagnostic Information Kyle Wilgers,1 Joel Waddell,2 Aaron Tyler,1 J. Allyson Hays,2,3 Mark C. Wissel,1 Michelle L. Altrich,1 Steve Kleiboeker,1 Dwight E. Yin2,3 1 Viracor Eurofins Clinical Diagnostics, Lee’s Summit, MO 2 Children’s Mercy, Kansas City, MO 3 University of Missouri-Kansas City School of Medicine, Kansas City, MO INTRODUCTION RESULTS Early diagnosis and treatment of invasive mucormycosis (IM) affects patient MUC PCR results of BAL submitted for Aspergillus testing. The proportions of Case study of IM confirmed by MUC PCR. A 12 year-old boy with multiply relapsed pre- outcomes. In immunocompromised patients, timely diagnosis and initiation of appropriate samples positive for Mucorales and Aspergillus in BAL specimens submitted for IA testing B cell acute lymphoblastic leukemia, despite extensive chemotherapy, two allogeneic antifungal therapy are critical to improving survival and reducing morbidity (Chamilos et al., are compared in Table 2. Out of 869 cases, 12 (1.4%) had POS MUC PCR, of which only hematopoietic stem cell transplants, and CAR T-cell therapy, presented with febrile 2008; Kontoyiannis et al., 2014; Walsh et al., 2012). two had been ordered for MUC PCR. Aspergillus was positive in 56/869 (6.4%) of neutropenia (0 cells/mm3), cough, and right shoulder pain while on fluconazole patients, with 5/869 (0.6%) positive for Aspergillus fumigatus and 50/869 (5.8%) positive prophylaxis. Chest CT revealed a right lung cavity, which ultimately became 5.6 x 6.2 x 5.9 Differentiating diagnosis between IM and invasive aspergillosis (IA) affects patient for Aspergillus terreus. -
Mucormycosis: a Review on Environmental Fungal Spores and Seasonal Variation of Human Disease
Advances in Infectious Diseases, 2012, 2, 76-81 http://dx.doi.org/10.4236/aid.2012.23012 Published Online September 2012 (http://www.SciRP.org/journal/aid) Mucormycosis: A Review on Environmental Fungal Spores and Seasonal Variation of Human Disease Rima I. El-Herte, Tania A. Baban, Souha S. Kanj* Division of Infectious Diseases, Department of Internal Medicine, American University of Beirut Medical Center, Beirut, Lebanon. Email: *[email protected] Received May 1st, 2012; revised June 3rd, 2012; accepted July 5th, 2012 ABSTRACT Mucormycosis is on the rise especially among patients with immunosuppressive conditions. There seems to be more cases seen at the end of summer and towards early autumn. Several studies have attempted to look at the seasonal varia- tions of fungal pathogens in variou indoor and outdoor settings. Only two reports, both from the Middle East, have ad- dressed the relationship of mucormycosis in human disease with climate conditions. In this paper we review, the rela- tionship of indoor and outdoor fungal particulates to the weather conditions and the reported seasonal variation of hu- man cases. Keywords: Mucormycosis; Seasonal Variation; Fungal Air Particulate Concentration; Mucor; Rhizopus; Rhinocerebral 1. Introduction bread, decaying fruits, vegetable matters, crop debris, soil, compost piles, animal excreta, and on excavation and con- Mucormycosis refers to infections caused by molds be- struction sites. Sporangiospores are easily aerosolized, and longing to the order of Mucorales. Members of the fam- are readily dispersed throughout the environment making ily Mucoraceae are the most common cause of mucor- inhalation the major mode of transmission. Published data mycosis in humans. -
Candida Glabrata
Candida glabrata Sometimes a problem, sometimes not… andida glabrata, once Pathogenicity known as Torulopsis Infections are most commonly seen Cglabrata, is a common non- in the elderly, immuno- hyphae forming yeast isolate in the compromised, and AIDS patients. It clinical laboratory. It is a member, is most importantly known as an along with over 200 other species, agent of urinary tract infections. In of the Candida genus. fact, 20% of all urinary yeast infections are due to C. glabrata, Habitat although they may be asymptomatic Candida spp. are ubiquitous and left untreated. inhabitants of the gastrointestinal tracts of mammals. According to More serious infections would Jay Hardy, CLS, SM (ASCP) one study, in the human GI tract, the include rare cases of endocarditis, most commonly isolated species meningitis, and disseminated would be in the following order: infections (fungaemias). Jay Hardy is the founder and C. albicans It has the ability to form sticky CEO of Hardy Diagnostics. C. tropicalis “biofilms” that adhere to living and He began his career in C. parapsilosis non-living surfaces (such as microbiology as a Medical C. glabrata catheters) thus forming microbial Technologist in Santa mats, making treatment more Barbara, California. However, some references list it as difficult. the second most commonly isolated In 1980, he began Candida organism from GI sources. Recently a shift has been noted from manufacturing culture media fungal disease caused by C. for the local hospitals. C. glabrata can be routinely isolated albicans to that of non-albicans Today, Hardy Diagnostics is as a commensal from the following species of Candida, such as glabrata, the third largest media body sites: especially in ICU patients. -
Ige-Mediated Immune Responses and Airway Detection of Aspergillus and Candida in Adult Cystic Fibrosis
CHEST Original Research GENETIC AND DEVELOPMENTAL DISORDERS IgE-Mediated Immune Responses and Airway Detection of Aspergillus and Candida in Adult Cystic Fibrosis Caroline G. Baxter , PhD ; Caroline B. Moore , PhD ; Andrew M. Jones , MD ; A. Kevin Webb , MD ; and David W. Denning , MD Background: The recovery of Aspergillus and Candida from the respiratory secretions of patients with cystic fi brosis (CF) is common. Their relationship to the development of allergic sensitization and effect on lung function has not been established. Improved techniques to detect these organ- isms are needed to increase knowledge of these effects. Methods: A 2-year prospective observational cohort study was performed. Fifty-fi ve adult patients with CF had sputum monitored for Aspergillus by culture and real-time polymerase chain reaction and Candida by CHROMagar and carbon assimilation profi le (API/ID 32C). Skin prick tests and ImmunoCAP IgEs to a panel of common and fungal allergens were performed. Lung function and pulmonary exacerbation rates were monitored over 2 years. Results: Sixty-nine percent of patient sputum samples showed chronic colonization with Candida and 60% showed colonization with Aspergillus . There was no association between the recovery of either organism and the presence of specifi c IgE responses. There was no difference in lung func- tion decline for patients with Aspergillus or Candida colonization compared with those without 5 5 5 5 (FEV1 percent predicted, P .41 and P .90, respectively; FVC % predicted, P .87 and P .37, respectively). However, there was a signifi cantly greater decline in FEV1 and increase in IV anti- 5 5 biotic days for those sensitized to Aspergillus (FEV1 decline, P .03; IV antibiotics days, P .03). -
Investigating the Impact of Polymicrobial Interactions on Mucorales Pathogenicity,” Submitted to the University of Birmingham in July 2019
INVESTIGATING THE IMPACT OF POLYMICROBIAL INTERACTIONS ON MUCORALES PATHOGENICITY by Courtney Alice Kousser A thesis submitted to the University of Birmingham for the degree of DOCTOR OF PHILOSOPHY Institute of Microbiology and Infection School of Biosciences College of Life and Environmental Sciences University of Birmingham July 2019 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. Abstract Within the human body, microorganisms reside as part of a complex and varied ecosystem, where they rarely exist in isolation. Bacteria and fungi have co- evolved to develop elaborate and intricate relationships, utilising both physical and chemical communication mechanisms. Mucorales are filamentous fungi that are the causative agents of mucormycosis in immunocompromised individuals. Key to the pathogenesis is the ability to germinate and penetrate the surrounding tissues, leading to angioinvasion, vessel thrombosis, and tissue necrosis. It is currently unknown whether Mucorales participate in polymicrobial relationships, and if so, how this affects the pathogenesis. This project analyses the relationship between Mucorales and the microorganisms they may encounter. Here we show that Pseudomonas aeruginosa culture supernatants and live bacteria inhibit Rhizopus microsporus germination through the sequestration of iron. -
Chronic Mucocutaneous Candidiasis Associated with Paracoccidioidomycosis in a Patient with Mannose Receptor Deficiency: First Case Reported in the Literature
Revista da Sociedade Brasileira de Medicina Tropical Journal of the Brazilian Society of Tropical Medicine Vol.:54:(e0008-2021): 2021 https://doi.org/10.1590/0037-8682-0008-2021 Case Report Chronic mucocutaneous candidiasis associated with paracoccidioidomycosis in a patient with mannose receptor deficiency: First case reported in the literature Dewton de Moraes Vasconcelos[1], Dalton Luís Bertolini[1] and Maurício Domingues Ferreira[1] [1]. Universidade de São Paulo, Faculdade de Medicina, Hospital das Clinicas, Departamento de Dermatologia, Ambulatório das Manifestações Cutâneas das Imunodeficiências Primárias, São Paulo, SP, Brasil. Abstract We describe the first report of a patient with chronic mucocutaneous candidiasis associated with disseminated and recurrent paracoccidioidomycosis. The investigation demonstrated that the patient had a mannose receptor deficiency, which would explain the patient’s susceptibility to chronic infection by Candida spp. and systemic infection by paracoccidioidomycosis. Mannose receptors are responsible for an important link between macrophages and fungal cells during phagocytosis. Deficiency of this receptor could explain the susceptibility to both fungal species, suggesting the impediment of the phagocytosis of these fungi in our patient. Keywords: Chronic mucocutaneous candidiasis. Paracoccidioidomycosis. Mannose receptor deficiency. INTRODUCTION “chronic mucocutaneous candidiasis and mannose receptor deficiency,” “chronic mucocutaneous candidiasis and paracoccidioidomycosis,” Chronic mucocutaneous -
Identification of Culture-Negative Fungi in Blood and Respiratory Samples
IDENTIFICATION OF CULTURE-NEGATIVE FUNGI IN BLOOD AND RESPIRATORY SAMPLES Farida P. Sidiq A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2014 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative George Bullerjahn Raymond Larsen Vipaporn Phuntumart © 2014 Farida P. Sidiq All Rights Reserved iii ABSTRACT Scott O. Rogers, Advisor Fungi were identified as early as the 1800’s as potential human pathogens, and have since been shown as being capable of causing disease in both immunocompetent and immunocompromised people. Clinical diagnosis of fungal infections has largely relied upon traditional microbiological culture techniques and examination of positive cultures and histopathological specimens utilizing microscopy. The first has been shown to be highly insensitive and prone to result in frequent false negatives. This is complicated by atypical phenotypes and organisms that are morphologically indistinguishable in tissues. Delays in diagnosis of fungal infections and inaccurate identification of infectious organisms contribute to increased morbidity and mortality in immunocompromised patients who exhibit increased vulnerability to opportunistic infection by normally nonpathogenic fungi. In this study we have retrospectively examined one-hundred culture negative whole blood samples and one-hundred culture negative respiratory samples obtained from the clinical microbiology lab at the University of Michigan Hospital in Ann Arbor, MI. Samples were obtained from randomized, heterogeneous patient populations collected between 2005 and 2006. Specimens were tested utilizing cetyltrimethylammonium bromide (CTAB) DNA extraction and polymerase chain reaction amplification of internal transcribed spacer (ITS) regions of ribosomal DNA utilizing panfungal ITS primers. -
Vaginal Yeast Infection a Vaginal Yeast Infection Is an Infection of the Vagina, Most Commonly Due to the Fungus Candida Albicans
5285 Anthony Wayne Drive, Detroit, MI 48202 (P) 313-577-5041 | (F) 313-577-9581 health.wayne.edu Vaginal Yeast Infection A vaginal yeast infection is an infection of the vagina, most commonly due to the fungus Candida albicans. Causes, incidence, and risk factors Most women have a vaginal yeast infection at some time. Candida albicans is a common type of fungus. It is often found in small amounts in the vagina, mouth, digestive tracts, and on the skin. Usually it does not cause disease or symptoms. Candida and the many other germs that normally live in the vagina keep each other in balance. However, sometimes the number of Candida albicans increases, leading to a yeast infection. A yeast infection can happen if you are: • Taking antibiotics used to treat other types of infections. Antibiotics change the normal balance between germs in the vagina by decreasing the number of protective bacteria. • Pregnant • Obese • Have diabetes A yeast infection is not a sexually transmitted illness. However, some men will develop symptoms such as itching and a rash on the penis after having sexual contact with an infected partner. Having many vaginal yeast infections may be a sign of other health problems. Other vaginal infections and discharges can be mistaken for vaginal yeast infection. Symptoms • Pain with intercourse • Painful urination • Redness and swelling of the vulva • Vaginal and labial itching, burning • Abnormal Vaginal Discharge • Ranges from a slightly watery, white discharge to a thick, white, chunky discharge (like cottage cheese) Signs and Tests A pelvic examination will be done. It may show swelling and redness of the skin of the vulva, in the vagina, and on the cervix.