Temporal Variations in the Air, Soil, and Fiddler Crab (Austruca Perplexa) Burrow Temperatures in Southern Thailand
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A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
From Ghost and Mud Shrimp
Zootaxa 4365 (3): 251–301 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4365.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:C5AC71E8-2F60-448E-B50D-22B61AC11E6A Parasites (Isopoda: Epicaridea and Nematoda) from ghost and mud shrimp (Decapoda: Axiidea and Gebiidea) with descriptions of a new genus and a new species of bopyrid isopod and clarification of Pseudione Kossmann, 1881 CHRISTOPHER B. BOYKO1,4, JASON D. WILLIAMS2 & JEFFREY D. SHIELDS3 1Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th St., New York, New York 10024, U.S.A. E-mail: [email protected] 2Department of Biology, Hofstra University, Hempstead, New York 11549, U.S.A. E-mail: [email protected] 3Department of Aquatic Health Sciences, Virginia Institute of Marine Science, College of William & Mary, P.O. Box 1346, Gloucester Point, Virginia 23062, U.S.A. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 252 Introduction . 252 Methods and materials . 253 Taxonomy . 253 Isopoda Latreille, 1817 . 253 Bopyroidea Rafinesque, 1815 . 253 Ionidae H. Milne Edwards, 1840. 253 Ione Latreille, 1818 . 253 Ione cornuta Bate, 1864 . 254 Ione thompsoni Richardson, 1904. 255 Ione thoracica (Montagu, 1808) . 256 Bopyridae Rafinesque, 1815 . 260 Pseudioninae Codreanu, 1967 . 260 Acrobelione Bourdon, 1981. 260 Acrobelione halimedae n. sp. 260 Key to females of species of Acrobelione Bourdon, 1981 . 262 Gyge Cornalia & Panceri, 1861. 262 Gyge branchialis Cornalia & Panceri, 1861 . 262 Gyge ovalis (Shiino, 1939) . 264 Ionella Bonnier, 1900 . -
The Fiddler Crab Claw-Waving Display
The Fiddler Crab Claw-waving Display: An analysis of the structure and function of a movement-based visual signal Martin J. How A thesis submitted for the degree of Doctor of Philosophy from The Australian National University October 2007 i Title page: Photograph of a male Uca mjoebergi in mid-wave. ii Declaration This thesis is an account of research undertaken between March 2004 and September 2007 at the Research School of Biological Sciences, The Australian National University, Canberra, Australia. Except where acknowledged in the customary manner, the material presented in this thesis is, to the best of my knowledge, original and has not been submitted in whole or in part for a degree in any other university. I am the senior author and the principal contributor to all aspects of the co-authored papers within. ……………………………………… Martin J. How iii iv Abstract Communication is an essential component of animal social systems and a diverse suite of signals can be found in the natural environment. An area of animal communication that, for technical reasons, we know very little about is the field of ‘movement-based’ or ‘dynamic’ visual signals. In this thesis, I make use of recent advances in measurement and analysis techniques, including digital video and image motion processing tools, to improve our understanding of how movement-based signals are adjusted according to signalling context. I measured and characterised the flamboyant claw-waving displays of male fiddler crabs (Genus Uca ) and made use of their transparent lifestyle to record the behavioural contexts in which these signals are produced The claw-waving displays of seven Australian species of fiddler crab are compared and contrasted to show that these signals are species-specific, but also vary within and between individuals. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Salt Marsh Food Web a Food Chain Shows How Each Living Thing Gets Its Food
North Carolina Aquariums Education Section Salt Marsh Food Web A food chain shows how each living thing gets its food. Some animals eat plants and some animals eat other animals. For example, a simple food chain links the plants, snails (that eats the plants), and the birds (that eat the snails). Each link in this chain is food for the next link. Food Webs are networks of several food chains. They show how plants and animals are connected in many ways to help them all survive. Below are some helpful terms associated with food chains and food webs. Helpful Terms Ecosystem- is a community of living and non-living things that work together. Producers- are plants that make their own food or energy. Consumers-are animals, since they are unable to produce their own food, they must consume (eat) plants or animals or both. There are three types of consumers: Herbivores-are animals that eat only plants. Carnivores- are animals that eat other animals. Omnivores- are animals that eat both plants and animals. Decomposers-are bacteria or fungi which feed on decaying matter. They are very important for any ecosystem. If they weren't in the ecosystem, the plants would not get essential nutrients, and dead matter and waste would pile up. Salt Marsh Food Web Activities The salt marsh houses many different plants and animals that eat each other, which is an intricately woven web of producers, consumers, and decomposers. Consumers usually eat more than one type of food, and they may be eaten by many other consumers. This means that several food chains become connected together to form a food web. -
Mechanisms of Homing in the Fiddler Crab Uca Rapax
The Journal of Experimental Biology 206, 4425-4442 4425 © 2003 The Company of Biologists Ltd doi:10.1242/jeb.00661 Mechanisms of homing in the fiddler crab Uca rapax 2. Information sources and frame of reference for a path integration system John E. Layne*, W. Jon P. Barnes and Lindsey M. J. Duncan Division of Environmental and Evolutionary Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, Scotland, UK *Author for correspondence at present address: Department of Entomology, Cornell University, Ithaca, NY 14853, USA (e-mail: [email protected]) Accepted 11 August 2003 Summary Fiddler crabs Uca rapax are central-place foragers, the digitized paths of the real crabs. The home vector making feeding excursions of up to several meters from computed by the model crab was then compared to the their burrows. This study investigates the sources of homing direction observed in the real crab. The model directional and distance information used by these crabs home vector that most closely matched that of the real when returning to their burrows. We tested the spatial crab was taken to comprise the path integration frame of reference (egocentric or exocentric), and the mechanism employed by fiddler crabs. The model that source of spatial information (idiothetic or allothetic) used best matched the real crab gained direction and distance during homing. We also tested which components of their idiothetically (from internal sources such as locomotion they integrated (only voluntary, or voluntary proprioceptors), and integrated only voluntary plus reflexive). locomotory information. Fiddler crabs in their natural mudflat habitat were Crabs were also made to run home across a patch of wet passively rotated during normal foraging behavior using acetate, on which they slipped and were thus forced to experimenter-controlled disks, before they returned home. -
Redalyc.Redescription of the Fiddler Crab Uca Spinicarpa Rathbun, 1900
Latin American Journal of Aquatic Research E-ISSN: 0718-560X [email protected] Pontificia Universidad Católica de Valparaíso Chile Arruda Bezerra, Luis; Alves Coelho, Petrônio Redescription of the fiddler crab Uca spinicarpa Rathbun, 1900 (Decapoda: Ocypodidae) Latin American Journal of Aquatic Research, vol. 38, núm. 2, julio, 2010, pp. 270-273 Pontificia Universidad Católica de Valparaíso Valparaiso, Chile Available in: http://www.redalyc.org/articulo.oa?id=175015266012 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Lat. Am. J. Aquat. Res., 38(2): 270-273, 2010 Lat. Am. J. Aquat. Res. 270 DOI: 10.3856/vol38-issue2-fulltext-12 Short Communication Redescription of the fiddler crab Uca spinicarpa Rathbun, 1900 (Decapoda: Ocypodidae) Luis Arruda Bezerra1 & Petrônio Alves Coelho1 1Programa de Pós-Graduação em Oceanografia, Departamento de Oceanografia Universidade Federal de Pernambuco Avenida da Arquitetura, S/N, 50740-550, Recife, Pernambuco, Brazil ABSTRACT. The fiddler crab Uca spinicarpa was presented by M.J. Rathbun; however, no original description or figures were provived. The species was presented in a key and the registration number of the type material mentioned. Thus, a redescription and figures of this species based on a specimen from the type locality are provided herein. Additional morphological characters based on specimens deposited in the National Museum of Natural History (Smithsonian Institution), Washington, DC, and in the American Museum of Natural History, New York City, as well as remarks regarding its geographic distribution are also provided. -
Decapoda, Brachyura
APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA de Decápodos Braquiuros de la Península Ibérica bérica I enínsula P raquiuros de la raquiuros B ecápodos D de APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA LA DE IDENTIFICACIÓN EN LA Y MOLECULARES MORFOLÓGICAS TÉCNICAS DE APLICACIÓN Herrero - MEGALOPA “big eyes” Leach 1793 Elena Marco Elena Marco-Herrero Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 Tesis Doctoral, Valencia 2015 Programa de Doctorado en Biodiversidad y Biología Evolutiva Rd. 99/2011 APLICACIÓN DE TÉCNICAS MORFOLÓGICAS Y MOLECULARES EN LA IDENTIFICACIÓN DE LA MEGALOPA DE DECÁPODOS BRAQUIUROS DE LA PENÍNSULA IBÉRICA TESIS DOCTORAL Elena Marco-Herrero Valencia, septiembre 2015 Directores José Antonio Cuesta Mariscal / Ferran Palero Pastor Tutor Álvaro Peña Cantero Als naninets AGRADECIMIENTOS-AGRAÏMENTS Colaboración y ayuda prestada por diferentes instituciones: - Ministerio de Ciencia e Innovación (actual Ministerio de Economía y Competitividad) por la concesión de una Beca de Formación de Personal Investigador FPI (BES-2010- 033297) en el marco del proyecto: Aplicación de técnicas morfológicas y moleculares en la identificación de estados larvarios planctónicos de decápodos braquiuros ibéricos (CGL2009-11225) - Departamento de Ecología y Gestión Costera del Instituto de Ciencias Marinas de Andalucía (ICMAN-CSIC) - Club Náutico del Puerto de Santa María - Centro Andaluz de Ciencias y Tecnologías Marinas (CACYTMAR) - Instituto Español de Oceanografía (IEO), Centros de Mallorca y Cádiz - Institut de Ciències del Mar (ICM-CSIC) de Barcelona - Institut de Recerca i Tecnología Agroalimentàries (IRTA) de Tarragona - Centre d’Estudis Avançats de Blanes (CEAB) de Girona - Universidad de Málaga - Natural History Museum of London - Stazione Zoologica Anton Dohrn di Napoli (SZN) - Universitat de Barcelona AGRAÏSC – AGRADEZCO En primer lugar quisiera agradecer a mis directores, el Dr. -
The Effect of Salinity on Larval Development of Uca Tangeri (Eydoux, 1835) (Brachyura: Ocypodidae) and New Findings of the Zoea
SciENTiA M arina73(2) June 2009, 297-305, Barcelona (Spain) ISSN: 0214-8358 doi: 10.3989/scimar.2009.73n2297 The effect of salinity on larval developmentUca of tangeri (Eydoux, 1835) (Brachyura: Ocypodidae) and new findings of the zoeal morphology EDUARDO D. SPIVAK1 and JOSÉ A. CUESTA2 1 Departamento de Biología, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata and Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina, Casilla de Correo 1245, 7600 Mar del Plata, Argentina. E-mail: [email protected] 2Instituto de Ciencias Marinas de Andalucía (CSIC), Avenida República Saharaui, 2, E-11510 Puerto Real, Cádiz, Spain. SUMMARY : In order to evaluate their tolerance to low salinities, zoeae of the fiddler crab Uca tangeri from the Rio San Pedro population (southwestern Spain) were reared in the laboratory at 20°C and at three salinities (16, 24 and 32). The zoeal development was completed at 24 and 32 but the crabs died as zoea I or zoea II, and very rarely as zoea III, at 16; tolerance to low salinities varied among clutches produced by different females. The duration of the first zoeal stage and of the complete zoeal development was shorter at 32. Our observations showed that the zoeae of U. tangeri could not tolerate retention in the mesohaline water of estuaries, and that export to oceanic waters would be optimal for their successful development. Survival at 24 suggests that larvae could also develop in polyhahne conditions if they were retained in the ocean-estuary interface. The presence of an additional zoeal stage (zoea VI) was observed in some individuals and associated with unfavourable combina tions of temperature and salinity. -
Download at Including Basic Examples on How to Use It
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.11.422154; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: Measuring Compound Eye Optics with Microscope and MicroCT Images Article Type: Methods Author Names and Affiliations: John Paul Currea1, Yash Sondhi2, Akito Y. Kawahara3, and Jamie Theobald2 1Department of Psychology, Florida International University, Miami, FL 33199, U.S.A. 2Department of Biological Sciences, Florida International University, Miami, FL 33199, U.S.A. 3Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, U.S.A. Abstract (<200 words): The arthropod compound eye is the most prevalent eye type in the animal kingdom, with an impressive range of shapes and sizes. Studying its natural range of morphologies provides insight into visual ecology, development, and evolution. In contrast to the camera-type eyes we possess, external structures of compound eyes often reveal resolution, sensitivity, and field of view if the eye is spherical. Non-spherical eyes, however, require measuring internal structures using imaging technology like MicroCT (µCT). µCT is a burgeoning 3D X-Ray imaging technique that has been used to image arthropod muscles, brains, ocelli, and eyes. Thus far, there is no efficient tool to automate characterizing compound eye optics in either 2D or 3D data. We present two open-source programs: (1) the ommatidia detecting algorithm (ODA), which automatically measures ommatidia count and diameter in 2D images, and (2) a µCT pipeline (ODA-3D), which calculates anatomical acuity, sensitivity, and field of view across the eye by applying the ODA to 3D data. -
Temporal Distribution in the Abundance of the Fiddler Crab Uca (Leptuca) Uruguayensis Nobili, 1901 (Decapoda: Ocypodidae) from G
Nauplius 21(2): 151-159, 2013 151 Temporal distribution in the abundance of the fiddler crab Uca (Leptuca) uruguayensis Nobili, 1901 (Decapoda: Ocypodidae) from Garças River mangrove, Guaratuba Bay, southern Brazil Salise Brandt Martins and Setuko Masunari (SBM, SM) Department of Zoology, Institute of Biological Sciences, Federal University of Paraná. Centro Politécnico, Jardim das Américas, Caixa Postal 19020, 81531-980, Curitiba, Paraná, Brazil. E-mails: (SBM) [email protected]; (SM) [email protected] ABSTRACT - A study on the temporal distribution, sex ratio, reproductive period, recruitment of juveniles and size composition of individuals of the fiddler crab Uca (Leptuca) uruguayensis was carried out in a population living in the Garças River mangrove, Guaratuba Bay, Paraná State, Brazil. Eight square samples of 0.25 m² (0.50 m side) were obtained on a monthly basis, from April/2011 to March/2012. The crabs were collected through the excavation of burrows and their carapace width (CW) was measured. Air and water temperatures varied from 19.0 to 29.5°C and 17.0 to 27.0°C, respectively, the salinity from 7 to 23 and the soil temperature from 19.0 to 29.2°C. A total of 1,099 fiddler crabs were collected, being 529 males, 520 females (of these, 9 ovigerous) and 50 sexually undifferentiated individuals. The average density of the population ranged from 12 (June/11) to 71 ind.m-² (May/11), but its annual fluctuation was not correlated to abiotic variables. The sex ratio was 1:1 all year round and in all CW classes. Although in low abundance, ovigerous females were recorded in six months and juvenile crabs were present all year round, indicating a continuous reproduction and recruitment of the species. -
Interactive Segmentation of Crystalline Cones in Compound Eyes
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.15.422850; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 InSegtCone: Interactive Segmentation of crystalline Cones in compound 2 eyes 3 4 Abstract 5 6 Understanding the diversity of eyes is crucial to unravel how different animals use vision to 7 interact with their respective environments. To date, comparative studies of eye anatomy are 8 scarce because they often involve time-consuming or inefficient methods. X-ray micro- 9 tomography is a promising high-throughput imaging technique that enables to reconstruct the 10 3D anatomy of eyes, but powerful tools are needed to perform fast conversions of anatomical 11 reconstructions into functional eye models. We developed a computing method named 12 InSegtCone to automatically segment the crystalline cones in the apposition compound eyes of 13 arthropods. Here, we describe the full auto-segmentation process, showcase its application to 14 three different insect compound eyes and evaluate its performance. The auto-segmentation 15 could successfully label the full individual shapes of 60%-80% of the crystalline cones, and is 16 about as accurate and 250 times faster than manual labelling of the individual cones. We 17 believe that InSegtCone can be an important tool for peer scientists to enable extensive 18 comparisons of the diversity of eyes and vision in arthropods. 19 20 Authors and affiliations 21 22 Pierre Tichit1*, Tunhe Zhou2*, Hans Martin Kjer3, Vedrana Andersen Dahl3, Anders Bjorholm 23 Dahl3, and Emily Baird1,4 24 25 ˚Corresponding author at Lund University.