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1 1 DNA Barcodes Reveal Deeply Neglected Diversity and Numerous
Page 1 of 57 1 DNA barcodes reveal deeply neglected diversity and numerous invasions of micromoths in 2 Madagascar 3 4 5 Carlos Lopez-Vaamonde1,2, Lucas Sire2, Bruno Rasmussen2, Rodolphe Rougerie3, 6 Christian Wieser4, Allaoui Ahamadi Allaoui 5, Joël Minet3, Jeremy R. deWaard6, Thibaud 7 Decaëns7, David C. Lees8 8 9 1 INRA, UR633, Zoologie Forestière, F- 45075 Orléans, France. 10 2 Institut de Recherche sur la Biologie de l’Insecte, UMR 7261 CNRS Université de Tours, UFR 11 Sciences et Techniques, Tours, France. 12 3Institut de Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, 13 CNRS, Sorbonne Université, EPHE, 57 rue Cuvier, CP 50, 75005 Paris, France. 14 4 Landesmuseum für Kärnten, Abteilung Zoologie, Museumgasse 2, 9020 Klagenfurt, Austria 15 5 Department of Entomology, University of Antananarivo, Antananarivo 101, Madagascar 16 6 Centre for Biodiversity Genomics, University of Guelph, 50 Stone Road E., Guelph, ON 17 N1G2W1, Canada 18 7Centre d'Ecologie Fonctionnelle et Evolutive (CEFE UMR 5175, CNRS–Université de Genome Downloaded from www.nrcresearchpress.com by UNIV GUELPH on 10/03/18 19 Montpellier–Université Paul-Valéry Montpellier–EPHE), 1919 Route de Mende, F-34293 20 Montpellier, France. 21 8Department of Life Sciences, Natural History Museum, Cromwell Road, SW7 5BD, UK. 22 23 24 Email for correspondence: [email protected] For personal use only. This Just-IN manuscript is the accepted prior to copy editing and page composition. It may differ from final official version of record. 1 Page 2 of 57 25 26 Abstract 27 Madagascar is a prime evolutionary hotspot globally, but its unique biodiversity is under threat, 28 essentially from anthropogenic disturbance. -
DNA Barcodes Reveal Deeply Neglected Diversity and Numerous Invasions of Micromoths in Madagascar
Genome DNA barcodes reveal deeply neglected diversity and numerous invasions of micromoths in Madagascar Journal: Genome Manuscript ID gen-2018-0065.R2 Manuscript Type: Article Date Submitted by the 17-Jul-2018 Author: Complete List of Authors: Lopez-Vaamonde, Carlos; Institut National de la Recherche Agronomique (INRA), ; Institut de Recherche sur la Biologie de l’Insecte (IRBI), Sire, Lucas; Institut de Recherche sur la Biologie de l’Insecte Rasmussen,Draft Bruno; Institut de Recherche sur la Biologie de l’Insecte Rougerie, Rodolphe; Institut Systématique, Evolution, Biodiversité (ISYEB), Wieser, Christian; Landesmuseum für Kärnten Ahamadi, Allaoui; University of Antananarivo, Department Entomology Minet, Joël; Institut de Systematique Evolution Biodiversite deWaard, Jeremy; Biodiversity Institute of Ontario, University of Guelph, Decaëns, Thibaud; Centre d'Ecologie Fonctionnelle et Evolutive (CEFE UMR 5175, CNRS–Université de Montpellier–Université Paul-Valéry Montpellier–EPHE), , CEFE UMR 5175 CNRS Lees, David; Natural History Museum London Keyword: Africa, invasive alien species, Lepidoptera, Malaise trap, plant pests Is the invited manuscript for consideration in a Special 7th International Barcode of Life Issue? : https://mc06.manuscriptcentral.com/genome-pubs Page 1 of 57 Genome 1 DNA barcodes reveal deeply neglected diversity and numerous invasions of micromoths in 2 Madagascar 3 4 5 Carlos Lopez-Vaamonde1,2, Lucas Sire2, Bruno Rasmussen2, Rodolphe Rougerie3, 6 Christian Wieser4, Allaoui Ahamadi Allaoui 5, Joël Minet3, Jeremy R. deWaard6, Thibaud 7 Decaëns7, David C. Lees8 8 9 1 INRA, UR633, Zoologie Forestière, F- 45075 Orléans, France. 10 2 Institut de Recherche sur la Biologie de l’Insecte, UMR 7261 CNRS Université de Tours, UFR 11 Sciences et Techniques, Tours, France. -
Monocyclic Components for Evaluating Disease Resistance to Cercospora Arachidicola and Cercosporidium Personatum in Peanut
Monocyclic Components for Evaluating Disease Resistance to Cercospora arachidicola and Cercosporidium personatum in Peanut by Limin Gong A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama August 6, 2016 Keywords: monocyclic components, disease resistance Copyright 2016 by Limin Gong Approved by Kira L. Bowen, Chair, Professor of Entomology and Plant Pathology Charles Y. Chen, Associate Professor of Crop, Soil and Environmental Sciences John F. Murphy, Professor of Entomology and Plant Pathology Jeffrey J. Coleman, Assisstant Professor of Entomology and Plant Pathology ABSTRACT Cultivated peanut (Arachis hypogaea L.) is an economically important crop that is produced in the United States and throughout the world. However, there are two major fungal pathogens of cultivated peanuts, and they each contribute to substantial yield losses of 50% or greater. The pathogens of these diseases are Cercospora arachidicola which causes early leaf spot (ELS), and Cercosporidium personatum which causes late leaf spot (LLS). While fungicide treatments are fairly effective for leaf spot management, disease resistance is still the best strategy. Therefore, it is important to evaluate and compare different genotypes for their disease resistance levels. The overall goal of this study was to determine resistance levels of different peanut genotypes to ELS and LLS. The peanut genotypes (Chit P7, C1001, Exp27-1516, Flavor Runner 458, PI 268868, and GA-12Y) used in this study include two genetically modified lines (Chit P7 and C1001) that over-expresses a chitinase gene. This overall goal was addressed with three specific objectives: 1) determine suitable conditions for pathogen culture and spore production in vitro; 2) determine suitable conditions for establishing infection in the greenhouse; 3) compare ELS and LLS disease reactions of young plants to those of older plants. -
Flowering Dynamics and Seed Production of Arachis Pintoi and Arachis Repens in the Brazilian Cerrados
Tropical Grasslands (2009) Volume 43, 139–150 139 Flowering dynamics and seed production of Arachis pintoi and Arachis repens in the Brazilian Cerrados M.A. CARVALHO1, E.A. PIZZARO JUNCAL2 Introduction and J.F.M. VALLS3 1Brazilian Agriculture Research Corporation The genus Arachis is a member of family (Embrapa), Embrapa Cerrados, Planaltina, DF Fabaceae, tribe Aeschynomeneae and subtribe Stylosanthinae. It is endemic in South America - Brazil and, at present, 69 species have been described 2 Pasturas de America, Montevideo, Uruguay (Krapovickas and Gregory 1994). 3Brazilian Agriculture Research Corporation Several species of Arachis have potential to (Embrapa), be incorporated into forage systems, notably Ara- Embrapa Recursos Genéticos e Biotecnologia, chis glabrata (section Rhizomatozae), A. pintoi Parque Estação Biológica, Brasília, DF - Brasil and A. repens (both section Caulorrhizae). These last 2 species, along with A. glabrata, appear as the most promising, since they produce large Abstract amounts of high quality forage and are prolific seeders (Valls and Simpson 1994). A. pintoi and Thirty-two accessions of the Caulorrhizae sec- A. repens (Krapovickas and Gregory 1994) are herbaceous, perennial plants, endemic in Brazil. tion of the genus Arachis were evaluated at 2 dif- They are considered multi-purpose legumes, ferent sites in the Brazilian Cerrados, in terms of being grown for forage, erosion control and orna- flowering period and intensity, seed yield and dis- mental purposes and as ground cover in orchards, tribution in the soil profile. Flowering occurred forests and low-tillage systems. between October and May with the accessions dif- The species of the Caulorrhizae section differ fering in the distribution, intensity and period of widely in terms of seed production. -
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Cryptogamie, Mycologie, 2013, 34 (4): 303-319 © 2013 Adac. Tous droits réservés Phylogeny and morphology of Leptosphaerulina saccharicola sp. nov. and Pleosphaerulina oryzae and relationships with Pithomyces Rungtiwa PHOOKAMSAK a, b, c, Jian-Kui LIU a, b, Ekachai CHUKEATIROTE a, b, Eric H. C. McKENZIE d & Kevin D. HYDE a, b, c * a Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand b School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand c International Fungal Research & Development Centre, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, 650224, China d Landcare Research, Private Bag 92170, Auckland, New Zealand Abstract – A Dothideomycete species, associated with leaf spots of sugarcane (Saccharum officinarum), was collected from Nakhonratchasima Province, Thailand. A single ascospore isolate was obtained and formed the asexual morph in culture. ITS, LSU, RPB2 and TEF1α gene regions were sequenced and analyzed with molecular data from related taxa. In a phylogenetic analysis the new isolate clustered with Leptosphaerulina americana, L. arachidicola, L. australis and L. trifolii (Didymellaceae) and the morphology was also comparable with Leptosphaerulina species. Leptosphaerulina saccharicola is introduced to accommodate this new collection which is morphologically and phylogenetically distinct from other species of Leptosphaerulina. A detailed description and illustration is provided for the new species, which is compared with similar taxa. The type specimen of Pleosphaerulina oryzae, is transferred to Leptosphaerulina. It is redescribed and is a distinct species from L. australis, with which it was formerly synonymized. Leptosphaerulina species have been linked to Pithomyces but the lack of phylogenetic support for this link is discussed. -
1. Padil Species Factsheet Scientific Name: Common Name Image
1. PaDIL Species Factsheet Scientific Name: Passalora personata (Berk. & M.A. Curtis) S.A. Khan & M. Kamal Anamorphic fungi Common Name Late leaf spot of peanut Live link: http://www.padil.gov.au/pests-and-diseases/Pest/Main/136607 Image Library Australian Biosecurity Live link: http://www.padil.gov.au/pests-and-diseases/ Partners for Australian Biosecurity image library Department of Agriculture, Water and the Environment https://www.awe.gov.au/ Department of Primary Industries and Regional Development, Western Australia https://dpird.wa.gov.au/ Plant Health Australia https://www.planthealthaustralia.com.au/ Museums Victoria https://museumsvictoria.com.au/ 2. Species Information 2.1. Details Specimen Contact: Dr Jose R. Liberato - [email protected] Author: Liberato JR & Shivas RG Citation: Liberato JR & Shivas RG (2006) Late leaf spot of peanut(Passalora personata )Updated on 7/12/2006 Available online: PaDIL - http://www.padil.gov.au Image Use: Free for use under the Creative Commons Attribution-NonCommercial 4.0 International (CC BY- NC 4.0) 2.2. URL Live link: http://www.padil.gov.au/pests-and-diseases/Pest/Main/136607 2.3. Facets Status: Exotic Species Occurrence in Australia Group: Fungi Commodity Overview: Horticulture Commodity Type: Grains Distribution: Cosmopolitan 2.4. Other Names Cercospora arachidis Henn. Cercospora personata (Berk. & M.A. Curtis) Ellis & Everh. Cercosporidium personatum (Berk. & M.A. Curtis) Deighton Cercosporiopsis personata (Berk. & M.A. Curtis) Miura Cladosporium personatum Berk. & M.A. Curtis Mycosphaerella berkeleyi W.A. Jenkins (teleomorph) Phaeoisariopsis personata (Berk. & M.A. Curtis) Arx Septogloeum arachidis Racib. 2.5. Diagnostic Notes Symptoms: Leaf spots circular, coalescing, dark brown to blackish-brown, 5-10 mm diameter, occasionally a yellow halo appearing in mature spots (Mulder & Holliday 1974). -
Quarantine Regulation for Importation of Plants
Quarantine Requirements for The Importation of Plants or Plant Products into The Republic of China Bureau of Animal and Plant Health Inspection and Quarantine Council of Agriculture Executive Yuan In case of any discrepancy between the Chinese text and the English translation thereof, the Chinese text shall govern. Updated November 26, 2009 更新日期:2009 年 12 月 16 日 - 1 - Quarantine Requirements for The Importation of Plants or Plant Products into The Republic of China A. Prohibited Plants or Plant Products Pursuant to Paragraph 1, Article 14, Plant Protection and Quarantine Act 1. List of prohibited plants or plant products, countries or districts of origin and the reasons for prohibition: Plants or Plant Products Countries or Districts of Origin Reasons for Prohibition 1. Entire or any part of the All countries and districts 1. Rice hoja blanca virus following living plants (Tenuivirus) (excluding seeds): 2. Rice dwarf virus (1) Brachiaria spp. (Phytoreovirus) (2) Echinochloa spp. 3. Rice stem nematode (3) Panicum spp. (Ditylenchus angustus (4) Paspalum spp. Butler) (5) Oryza spp., Leersia hexandra, Saccioleps interrupta (6) Rottboellia spp. (7) Triticum aestivum 2. Entire or any part of the Asia and Pacific Region West Indian sweet potato following living plants (1) Palau weevil (excluding seeds) (2) China (Euscepes postfasciatus (1) Calystegia spp. (3) Cook Islands Fairmaire) (2) Dioscorea japonica (4) Federated States of Micronesia (3) Ipomoea spp. (5) Fiji (4) Pharbitis spp. (6) Guam (7) Kiribati (8) New Caledonia (9) Norfolk Island -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
Groundnut Viral Diseases in West Africa
I 1 .. I? ?' GROUNDNUT VIRAL DISEASES IN WEST AFRICA DOLLET Michel*, DUBERN Jean**, FAUQUET Claude***, THOUVENEL Jean-Claude***,and BOCKELEE-MORVAN André**** Respectively : *IRHO/CIRAD, **ORSTOM/CIRAD, BP 5035, 34032 Montpellier, France. *** ORSTOM, BP V 51, Abidjan, Côte d'Ivoire ; all members of the LPRC (CIRAD/ INRA/ORSTOM), Laboratoire de Phytovirologie des Régions Chaudes. **** Division Oléagineux Annuels, IRHO/CIRAD, 11 Square Pétrarque, 75116 Paris', France. Introduction . The groundnut which is one of the most popular legume grown in West Africa, is naturally infected by a Large number of virus. or virus-like diseases. It is one of the most severely-infected tropical plants in number of viral diseases. Some of them were studied and viruses identified : Peanut clump virus (Thouvenel et al., 19761, Groundnut eye spot virys (Dubern' and Dollet, 19801, Groundnut crinkle virus (Dubern and Dollet, 19811, Groundnut rosette virus (Dubern, 19801, Tomato spotted wiIt virus (Dubern and Fauquet, 1985) and Groundnut chlorotic spotting virus (Fauquet et al., 19851. The most important properties according to differe'nt aspects are reported.' Some other diseases are only described in parts : Groundnut streak (Fauquet and Thouvenel, 19-35), Groundnut mosaic, Groundnut f Lecking and Groundnut golden diseases (Dubern, 1979). There are also , different symptoms!wKich could be attributed to viral diseases as rugose leaf, Groundnut leaf-curl, Groundnut bushy stunt ; their etiology is at present unknown. 9 t 2 6 - Peanut clump virus Peanut Clump Virus (PCV), R/1: 2.1/4: E/E: S/Fu. Intermediate between ,hordeivirus and tobamovirus groups (Furovirus ?l. Main disease and 'geographical distribution The disease reappears in the same place in succeeding crops. -
A Contribution to the Aphid Fauna of Greece
Bulletin of Insectology 60 (1): 31-38, 2007 ISSN 1721-8861 A contribution to the aphid fauna of Greece 1,5 2 1,6 3 John A. TSITSIPIS , Nikos I. KATIS , John T. MARGARITOPOULOS , Dionyssios P. LYKOURESSIS , 4 1,7 1 3 Apostolos D. AVGELIS , Ioanna GARGALIANOU , Kostas D. ZARPAS , Dionyssios Ch. PERDIKIS , 2 Aristides PAPAPANAYOTOU 1Laboratory of Entomology and Agricultural Zoology, Department of Agriculture Crop Production and Rural Environment, University of Thessaly, Nea Ionia, Magnesia, Greece 2Laboratory of Plant Pathology, Department of Agriculture, Aristotle University of Thessaloniki, Greece 3Laboratory of Agricultural Zoology and Entomology, Agricultural University of Athens, Greece 4Plant Virology Laboratory, Plant Protection Institute of Heraklion, National Agricultural Research Foundation (N.AG.RE.F.), Heraklion, Crete, Greece 5Present address: Amfikleia, Fthiotida, Greece 6Present address: Institute of Technology and Management of Agricultural Ecosystems, Center for Research and Technology, Technology Park of Thessaly, Volos, Magnesia, Greece 7Present address: Department of Biology-Biotechnology, University of Thessaly, Larissa, Greece Abstract In the present study a list of the aphid species recorded in Greece is provided. The list includes records before 1992, which have been published in previous papers, as well as data from an almost ten-year survey using Rothamsted suction traps and Moericke traps. The recorded aphidofauna consisted of 301 species. The family Aphididae is represented by 13 subfamilies and 120 genera (300 species), while only one genus (1 species) belongs to Phylloxeridae. The aphid fauna is dominated by the subfamily Aphidi- nae (57.1 and 68.4 % of the total number of genera and species, respectively), especially the tribe Macrosiphini, and to a lesser extent the subfamily Eriosomatinae (12.6 and 8.3 % of the total number of genera and species, respectively). -
Elicitation of Grapevine Defense Responses Against Plasmopara Viticola , the Causal Agent of Downy Mildew
Elicitation of grapevine defense responses against Plasmopara viticola , the causal agent of downy mildew Dissertation zur Erlangung des Doktorgrades (Dr. rer. nat.) der Naturwissenschaftlichen Fachbereiche der Justus-Liebig-Universität Gießen Durchgeführt am Institut für Phytopathologie und Angewandte Zoologie Vorgelegt von M.Sc. Moustafa Selim aus Kairo, Ägypten Dekan: Prof. Dr. Peter Kämpfer 1. Gutachter: Prof. Dr. Karl-Heinz Kogel 2. Gutachterin: Prof. Dr. Tina Trenczek Dedication / Widmung I. DEDICATION / WIDMUNG: Für alle, die nach Wissen streben Und ihren Horizont erweitern möchten bereit sind, alles zu geben Und das Unbekannte nicht fürchten Für alle, die bereit sind, sich zu schlagen In der Wissenschaftsschlacht keine Angst haben Wissen ist Macht **************** For all who seek knowledge And want to expand their horizon Who are ready to give everything And do not fear the unknown For all who are willing to fight In the science battle Who have no fear Because Knowledge is power I Declaration / Erklärung II. DECLARATION I hereby declare that the submitted work was made by myself. I also declare that I did not use any other auxiliary material than that indicated in this work and that work of others has been always cited. This work was not either as such or similarly submitted to any other academic authority. ERKLÄRUNG Hiermit erklare ich, dass ich die vorliegende Arbeit selbststandig angefertigt und nur die angegebenen Quellen and Hilfsmittel verwendet habe und die Arbeit der anderen wurde immer zitiert. Die Arbeit lag in gleicher oder ahnlicher Form noch keiner anderen Prufungsbehorde vor. II Contents III. CONTENTS I. DEDICATION / WIDMUNG……………...............................................................I II. ERKLÄRUNG / DECLARATION .…………………….........................................II III. -
Taxonomy of the Genus Arachis (Leguminosae)
BONPLANDIA16 (Supi): 1-205.2007 BONPLANDIA 16 (SUPL.): 1-205. 2007 TAXONOMY OF THE GENUS ARACHIS (LEGUMINOSAE) by AntonioKrapovickas1 and Walton C. Gregory2 Translatedby David E. Williams3and Charles E. Simpson4 director,Instituto de Botánicadel Nordeste, Casilla de Correo209, 3400 Corrientes, Argentina, deceased.Formerly WNR Professor ofCrop Science, Emeritus, North Carolina State University, USA. 'InternationalAffairs Specialist, USDA Foreign Agricultural Service, Washington, DC 20250,USA. 4ProfessorEmeritus, Texas Agrie. Exp. Stn., Texas A&M Univ.,Stephenville, TX 76401,USA. 7 This content downloaded from 195.221.60.18 on Tue, 24 Jun 2014 00:12:00 AM All use subject to JSTOR Terms and Conditions BONPLANDIA16 (Supi), 2007 Table of Contents Abstract 9 Resumen 10 Introduction 12 History of the Collections 15 Summary of Germplasm Explorations 18 The Fruit of Arachis and its Capabilities 20 "Sócias" or Twin Species 24 IntraspecificVariability 24 Reproductive Strategies and Speciation 25 Dispersion 27 The Sections of Arachis ; 27 Arachis L 28 Key for Identifyingthe Sections 33 I. Sect. Trierectoides Krapov. & W.C. Gregorynov. sect. 34 Key for distinguishingthe species 34 II. Sect. Erectoides Krapov. & W.C. Gregory nov. sect. 40 Key for distinguishingthe species 41 III. Sect. Extranervosae Krapov. & W.C. Gregory nov. sect. 67 Key for distinguishingthe species 67 IV. Sect. Triseminatae Krapov. & W.C. Gregory nov. sect. 83 V. Sect. Heteranthae Krapov. & W.C. Gregory nov. sect. 85 Key for distinguishingthe species 85 VI. Sect. Caulorrhizae Krapov. & W.C. Gregory nov. sect. 94 Key for distinguishingthe species 95 VII. Sect. Procumbentes Krapov. & W.C. Gregory nov. sect. 99 Key for distinguishingthe species 99 VIII. Sect.