Euglena Gracilis - Paramecium Caudatum - Six Other Protozoa Cultures Background the Classification of Protozoa Is a Constantly Changing Field
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A Morphological Re-Description of Ploeotia Pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia
A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks (Under the direction of Mark A. Farmer) Abstract The genus Ploeotia represents a group of small, colorless, heterotrophic euglenids commonly found in shallow-water marine sediments. Species belonging to this genus have histori- cally been poorly described and studied. However, a Group I intron discovered within the small subunit ribosomal DNA gene of Ploeotia costata, makes P. costata the only euglena- zoan known to possess an actively splicing Group I intron. This intron contains conserved secondary structures that indicate monophyly with introns found in Stramenopiles and Ban- giales red algae. This project describes the internal and external morphology of a related species, Ploeotia pseudanisonema, using light and electron microscopy, and investigates the possibility of a Group I intron within P. pseudanisonema. Using recently obtained SSU rRNA sequences, we also examine the phylogeny of Ploeotia, and comment on the relationship of the genus Keelungia to Ploeotia. Index words: Ploeotia pseudanisonema, Ploeotia costata, Ploeotia vitrea, Keelungia pulex, Transmission electron microscopy, Scanning electron microscopy, Small subunit rRNA, Euglenozoan Phylogeny A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks B.S., University of Alabama, 2009 A Thesis Submitted to the Graduate Faculty of The University of Georgia in Partial Fulfillment of the Requirements for the Degree Master of Science Athens, Georgia 2010 c 2014 Andrew Buren Brooks All Right Reserved A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks Approved: Major Professor: Mark A. -
Microorganisms – Protists: Euglena
Microorganisms – Protists: Euglena Euglena are unicellular organisms classified into the Kingdom Protista, and the Phylum Euglenophyta. All euglena have chloroplasts and can make their own food by photosynthesis. They are not completely autotrophic though, euglena can also absorb food from their environment. Euglena usually live in quiet ponds or puddles. Euglena move by a flagellum (plural flagella), which is a long whip-like structure that acts like a little motor. The flagellum is located on the anterior (front) end, and twirls in such a way as to pull the cell through the water. It is attached at an inward pocket called the reservoir. Color and label the reservoir grey. Color and label the flagellum black. The Euglena is unique in that it is both heterotrophic (must consume food) and autotrophic (can make its own food). Chloroplasts within the euglena trap sunlight that is used for photosynthesis and can be seen as several rod-like structures throughout the cell. Color and label the chloroplasts green. Euglena also have an eyespot at the anterior end that detects light, it can be seen near the reservoir. This helps the euglena find bright areas to gather sunlight to make their food. Color and label the eyespot red. Euglena can also gain nutrients by absorbing them across their cell membrane, hence they become heterotrophic when light is not available, and they cannot photosynthesize. The euglena has a stiff pellicle outside the cell membrane that helps it keep its shape, though the pellicle is somewhat flexible, and some euglena can be observed scrunching up and moving in an inchworm type fashion. -
Bioremoval of Copper and Nickel on Living and Non-Living Euglena Gracilis
1 Bioremoval of copper and nickel on living and non-living Euglena gracilis 2 3 4 5 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master 6 of Science in the Faculty of Arts and Sciences 7 8 9 10 11 12 13 TRENT UNIVERSITY 14 Peterborough, Ontario, Canada 15 16 17 18 19 20 21 Environmental and Life Sciences MSc. Graduate Program 22 April 2016 23 © Cameron Winters 2016 24 i 25 Abstract 26 Bioremoval of Copper and Nickel on living and non-living Euglena gracilis 27 Cam Winters 2016 28 This study assesses the ability of a unicellular protist, Euglena gracilis, to remove 29 Cu and Ni from solution in mono- and bi-metallic systems. Living Euglena cells and 30 non-living Euglena biomass were examined for their capacity to sorb metal ions. 31 Adsorption isotherms were used in batch systems to describe the kinetic and equilibrium 32 characteristics of metal removal. In living systems results indicate that the sorption 33 reaction occurs quickly (<30 min) in both Cu (II) and Ni (II) mono-metallic systems and 34 adsorption follows a pseudo-second order kinetics model for both metals. Sorption 35 capacity and intensity was greater for Cu than Ni (p < 0.05) and were described by the 36 Freundlich model. In bi-metallic systems sorption of both metals appears equivalent. In 37 non-living systems sorption occurred quickly (10-30 min) and both Cu and Ni 38 equilibrium uptake increased with a concurrent increase of initial metal concentrations. 39 The pseudo-first-order model was applied to the kinetic data and the Langmuir and 40 Freundlich models effectively described single-metal systems. -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
Evolution and Comparative Morphology of the Euglenophyte
EVOLUTION AND COMPARATIVE MORPHOLOGY OF THE EUGLENOPHYTE PLASTID by PATRICK JERRY PAUL BROWN (Under the Direction of Mark A. Farmer) ABSTRACT My doctoral research centered on understanding the evolution of the euglenophyte protists, with special attention paid to their plastids. The euglenophytes are a widely distributed group of euglenid protists that have acquired a chloroplast via secondary symbiogenesis. The goals of my research were to 1) test the efficacy of plastid morphological and ultrastructural characters in phylogenetic analysis; 2) understand the process of plastid development and partitioning in the euglenophytes; 3) to use a plastid- encoded protein gene to determine a euglenophyte phylogeny; and 4) to perform a multi- gene analysis to uncover clues about the origins of the euglenophyte plastid. My work began with an alpha-taxonomic study that redefined the rare euglenophyte Euglena rustica. This work not only validly circumscribed the species, but also noted novel features of its habitat, cyclic migration habits, and cellular biology. This was followed by a study of plastid morphology and development in a number of diverse euglenophytes. The results of this study showed that the plastids of euglenophytes undergo drastic changes in morphology and ultrastructure over the course of a single cell division cycle. I concluded that there are four main classes of plastid development and partitioning in the euglenophytes, and that the class a given species will use is dependant on its interphase plastid morphology and the rigidity of the cell. The discovery of the class IV partitioning strategy in which cells with only one or very few plastids fragment their plastids prior to cell division was very significant. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
Identification of the Meiotic Life Cycle Stage of Trypanosoma Brucei in The
Identification of the meiotic life cycle stage of Trypanosoma brucei in the tsetse fly Lori Peacocka,b, Vanessa Ferrisa,b, Reuben Sharmac,1, Jack Sunterc, Mick Baileyb, Mark Carringtonc, and Wendy Gibsona,2 aSchool of Biological Sciences, University of Bristol, Bristol BS8 1UG, United Kingdom; bDepartment of Clinical Veterinary Science, University of Bristol, Bristol BS40 7DU, United Kingdom; and cDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom Edited by Francisco J. Ayala, University of California, Irvine, CA, and approved January 27, 2011 (received for review December 23, 2010) Elucidating the mechanism of genetic exchange is fundamental for genetic exchange in T. brucei involves mixing of mitochondrial understanding how genes for such traits as virulence, disease (kinetoplast) and nuclear genomes, because hybrid progeny have phenotype, and drug resistance are transferred between pathogen hybrid kinetoplast DNA (kDNA) networks with mini-circles de- strains. Genetic exchange occurs in the parasitic protists Trypano- rived from both parents (14, 15). Plausible models for the gen- soma brucei, T. cruzi, and Leishmania major, but the precise cellular eration of hybrid kDNA networks are limited by the complex mechanisms are unknown, because the process has not been ob- structure and highly ordered replication of this concatenated served directly. Here we exploit the identification of homologs of mass of small DNA circles (16). Finally, trypanosomes belong to meiotic genes in the T. brucei genome and demonstrate that three the Euglenozoa, a deep branch within the excavate eukaryote su- functionally distinct, meiosis-specific proteins are expressed in the pergroup (17, 18). The production of four haploid gametes and nucleus of a single specific cell type, defining a previously unde- subsequent fusion to reform the diploid occurring in trypanosomes scribed developmental stage occurring within the tsetse flysalivary would strongly suggest the presence of a typical meiosis in the last gland. -
23.3 Groups of Protists
Chapter 23 | Protists 639 cysts that are a protective, resting stage. Depending on habitat of the species, the cysts may be particularly resistant to temperature extremes, desiccation, or low pH. This strategy allows certain protists to “wait out” stressors until their environment becomes more favorable for survival or until they are carried (such as by wind, water, or transport on a larger organism) to a different environment, because cysts exhibit virtually no cellular metabolism. Protist life cycles range from simple to extremely elaborate. Certain parasitic protists have complicated life cycles and must infect different host species at different developmental stages to complete their life cycle. Some protists are unicellular in the haploid form and multicellular in the diploid form, a strategy employed by animals. Other protists have multicellular stages in both haploid and diploid forms, a strategy called alternation of generations, analogous to that used by plants. Habitats Nearly all protists exist in some type of aquatic environment, including freshwater and marine environments, damp soil, and even snow. Several protist species are parasites that infect animals or plants. A few protist species live on dead organisms or their wastes, and contribute to their decay. 23.3 | Groups of Protists By the end of this section, you will be able to do the following: • Describe representative protist organisms from each of the six presently recognized supergroups of eukaryotes • Identify the evolutionary relationships of plants, animals, and fungi within the six presently recognized supergroups of eukaryotes • Identify defining features of protists in each of the six supergroups of eukaryotes. In the span of several decades, the Kingdom Protista has been disassembled because sequence analyses have revealed new genetic (and therefore evolutionary) relationships among these eukaryotes. -
Brown Algae and 4) the Oomycetes (Water Molds)
Protista Classification Excavata The kingdom Protista (in the five kingdom system) contains mostly unicellular eukaryotes. This taxonomic grouping is polyphyletic and based only Alveolates on cellular structure and life styles not on any molecular evidence. Using molecular biology and detailed comparison of cell structure, scientists are now beginning to see evolutionary SAR Stramenopila history in the protists. The ongoing changes in the protest phylogeny are rapidly changing with each new piece of evidence. The following classification suggests 4 “supergroups” within the Rhizaria original Protista kingdom and the taxonomy is still being worked out. This lab is looking at one current hypothesis shown on the right. Some of the organisms are grouped together because Archaeplastida of very strong support and others are controversial. It is important to focus on the characteristics of each clade which explains why they are grouped together. This lab will only look at the groups that Amoebozoans were once included in the Protista kingdom and the other groups (higher plants, fungi, and animals) will be Unikonta examined in future labs. Opisthokonts Protista Classification Excavata Starting with the four “Supergroups”, we will divide the rest into different levels called clades. A Clade is defined as a group of Alveolates biological taxa (as species) that includes all descendants of one common ancestor. Too simplify this process, we have included a cladogram we will be using throughout the SAR Stramenopila course. We will divide or expand parts of the cladogram to emphasize evolutionary relationships. For the protists, we will divide Rhizaria the supergroups into smaller clades assigning them artificial numbers (clade1, clade2, clade3) to establish a grouping at a specific level. -
Molecular Preservation of 1.88&Thinsp;Ga Gunflint Organic
UCLA UCLA Previously Published Works Title Molecular preservation of 1.88 Ga Gunflint organic microfossils as a function of temperature and mineralogy. Permalink https://escholarship.org/uc/item/1028h5hd Journal Nature communications, 7(1) ISSN 2041-1723 Authors Alleon, Julien Bernard, Sylvain Le Guillou, Corentin et al. Publication Date 2016-06-17 DOI 10.1038/ncomms11977 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ARTICLE Received 14 Aug 2015 | Accepted 18 May 2016 | Published 17 Jun 2016 DOI: 10.1038/ncomms11977 OPEN Molecular preservation of 1.88 Ga Gunflint organic microfossils as a function of temperature and mineralogy Julien Alleon1, Sylvain Bernard1, Corentin Le Guillou1, Johanna Marin-Carbonne2, Sylvain Pont1, Olivier Beyssac1, Kevin D. McKeegan3 & Franc¸ois Robert1 The significant degradation that fossilized biomolecules may experience during burial makes it challenging to assess the biogenicity of organic microstructures in ancient rocks. Here we investigate the molecular signatures of 1.88 Ga Gunflint organic microfossils as a function of their diagenetic history. Synchrotron-based XANES data collected in situ on individual microfossils, at the submicrometre scale, are compared with data collected on modern microorganisms. Despite diagenetic temperatures of B150–170 °C deduced from Raman data, the molecular signatures of some Gunflint organic microfossils have been exceptionally well preserved. Remarkably, amide groups derived from protein compounds can still be detected. We also demonstrate that an additional increase of diagenetic temperature of only 50 °C and the nanoscale association with carbonate minerals have significantly altered the molecular signatures of Gunflint organic microfossils from other localities. Altogether, the present study provides key insights for eventually decoding the earliest fossil record. -
Phylogenomic Analyses Support the Monophyly of Excavata and Resolve Relationships Among Eukaryotic ‘‘Supergroups’’
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic ‘‘supergroups’’ Vladimir Hampla,b,c, Laura Huga, Jessica W. Leigha, Joel B. Dacksd,e, B. Franz Langf, Alastair G. B. Simpsonb, and Andrew J. Rogera,1 aDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, Canada B3H 1X5; bDepartment of Biology, Dalhousie University, Halifax, NS, Canada B3H 4J1; cDepartment of Parasitology, Faculty of Science, Charles University, 128 44 Prague, Czech Republic; dDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom; eDepartment of Cell Biology, University of Alberta, Edmonton, AB, Canada T6G 2H7; and fDepartement de Biochimie, Universite´de Montre´al, Montre´al, QC, Canada H3T 1J4 Edited by Jeffrey D. Palmer, Indiana University, Bloomington, IN, and approved January 22, 2009 (received for review August 12, 2008) Nearly all of eukaryotic diversity has been classified into 6 strong support for an incorrect phylogeny (16, 19, 24). Some recent suprakingdom-level groups (supergroups) based on molecular and analyses employ objective data filtering approaches that isolate and morphological/cell-biological evidence; these are Opisthokonta, remove the sites or taxa that contribute most to these systematic Amoebozoa, Archaeplastida, Rhizaria, Chromalveolata, and Exca- errors (19, 24). vata. However, molecular phylogeny has not provided clear evi- The prevailing model of eukaryotic phylogeny posits 6 major dence that either Chromalveolata or Excavata is monophyletic, nor supergroups (25–28): Opisthokonta, Amoebozoa, Archaeplastida, has it resolved the relationships among the supergroups. To Rhizaria, Chromalveolata, and Excavata. With some caveats, solid establish the affinities of Excavata, which contains parasites of molecular phylogenetic evidence supports the monophyly of each of global importance and organisms regarded previously as primitive Rhizaria, Archaeplastida, Opisthokonta, and Amoebozoa (16, 18, eukaryotes, we conducted a phylogenomic analysis of a dataset of 29–34).