The Drosophila Junctophilin Gene Is Functionally Equivalent to Its Four
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Wo 2010/075007 A2
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date 1 July 2010 (01.07.2010) WO 2010/075007 A2 (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12Q 1/68 (2006.01) G06F 19/00 (2006.01) kind of national protection available): AE, AG, AL, AM, C12N 15/12 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, (21) International Application Number: DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/US2009/067757 HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, (22) International Filing Date: KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, 11 December 2009 ( 11.12.2009) ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, (25) Filing Language: English SE, SG, SK, SL, SM, ST, SV, SY, TJ, TM, TN, TR, TT, (26) Publication Language: English TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 12/3 16,877 16 December 2008 (16.12.2008) US kind of regional protection available): ARIPO (BW, GH, GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, (71) Applicant (for all designated States except US): DODDS, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, W., Jean [US/US]; 938 Stanford Street, Santa Monica, TM), European (AT, BE, BG, CH, CY, CZ, DE, DK, EE, CA 90403 (US). -
Exploring Prostate Cancer Genome Reveals Simultaneous Losses of PTEN, FAS and PAPSS2 in Patients with PSA Recurrence After Radical Prostatectomy
Int. J. Mol. Sci. 2015, 16, 3856-3869; doi:10.3390/ijms16023856 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Exploring Prostate Cancer Genome Reveals Simultaneous Losses of PTEN, FAS and PAPSS2 in Patients with PSA Recurrence after Radical Prostatectomy Chinyere Ibeawuchi 1, Hartmut Schmidt 2, Reinhard Voss 3, Ulf Titze 4, Mahmoud Abbas 5, Joerg Neumann 6, Elke Eltze 7, Agnes Marije Hoogland 8, Guido Jenster 9, Burkhard Brandt 10 and Axel Semjonow 1,* 1 Prostate Center, Department of Urology, University Hospital Muenster, Albert-Schweitzer-Campus 1, Gebaeude 1A, Muenster D-48149, Germany; E-Mail: [email protected] 2 Center for Laboratory Medicine, University Hospital Muenster, Albert-Schweitzer-Campus 1, Gebaeude 1A, Muenster D-48149, Germany; E-Mail: [email protected] 3 Interdisciplinary Center for Clinical Research, University of Muenster, Albert-Schweitzer-Campus 1, Gebaeude D3, Domagkstrasse 3, Muenster D-48149, Germany; E-Mail: [email protected] 4 Pathology, Lippe Hospital Detmold, Röntgenstrasse 18, Detmold D-32756, Germany; E-Mail: [email protected] 5 Institute of Pathology, Mathias-Spital-Rheine, Frankenburg Street 31, Rheine D-48431, Germany; E-Mail: [email protected] 6 Institute of Pathology, Klinikum Osnabrueck, Am Finkenhuegel 1, Osnabrueck D-49076, Germany; E-Mail: [email protected] 7 Institute of Pathology, Saarbrücken-Rastpfuhl, Rheinstrasse 2, Saarbrücken D-66113, Germany; E-Mail: [email protected] 8 Department -
A Multi-Stage Genome-Wide Association Study of Uterine Fibroids in African Americans
UCLA UCLA Previously Published Works Title A multi-stage genome-wide association study of uterine fibroids in African Americans. Permalink https://escholarship.org/uc/item/0mc5r0xh Journal Human genetics, 136(10) ISSN 0340-6717 Authors Hellwege, Jacklyn N Jeff, Janina M Wise, Lauren A et al. Publication Date 2017-10-01 DOI 10.1007/s00439-017-1836-1 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Hum Genet (2017) 136:1363–1373 DOI 10.1007/s00439-017-1836-1 ORIGINAL INVESTIGATION A multi‑stage genome‑wide association study of uterine fbroids in African Americans Jacklyn N. Hellwege1,2,3 · Janina M. Jef4 · Lauren A. Wise5,6 · C. Scott Gallagher7 · Melissa Wellons8,9 · Katherine E. Hartmann3,9 · Sarah F. Jones1,3 · Eric S. Torstenson1,2 · Scott Dickinson10 · Edward A. Ruiz‑Narváez6 · Nadin Rohland7 · Alexander Allen7 · David Reich7,11,12 · Arti Tandon7 · Bogdan Pasaniuc13,14 · Nicholas Mancuso13 · Hae Kyung Im10 · David A. Hinds15 · Julie R. Palmer6 · Lynn Rosenberg6 · Joshua C. Denny16,17 · Dan M. Roden2,16,17,18 · Elizabeth A. Stewart19 · Cynthia C. Morton12,20,21,22 · Eimear E. Kenny4 · Todd L. Edwards1,2,3 · Digna R. Velez Edwards2,3,9 Received: 12 April 2017 / Accepted: 16 August 2017 / Published online: 23 August 2017 © Springer-Verlag GmbH Germany 2017 Abstract Uterine fbroids are benign tumors of the uterus imaging, genotyped and imputed to 1000 Genomes. Stage 2 afecting up to 77% of women by menopause. They are the used self-reported fbroid and GWAS data from 23andMe, leading indication for hysterectomy, and account for $34 bil- Inc. -
Molecular Effects of Isoflavone Supplementation Human Intervention Studies and Quantitative Models for Risk Assessment
Molecular effects of isoflavone supplementation Human intervention studies and quantitative models for risk assessment Vera van der Velpen Thesis committee Promotors Prof. Dr Pieter van ‘t Veer Professor of Nutritional Epidemiology Wageningen University Prof. Dr Evert G. Schouten Emeritus Professor of Epidemiology and Prevention Wageningen University Co-promotors Dr Anouk Geelen Assistant professor, Division of Human Nutrition Wageningen University Dr Lydia A. Afman Assistant professor, Division of Human Nutrition Wageningen University Other members Prof. Dr Jaap Keijer, Wageningen University Dr Hubert P.J.M. Noteborn, Netherlands Food en Consumer Product Safety Authority Prof. Dr Yvonne T. van der Schouw, UMC Utrecht Dr Wendy L. Hall, King’s College London This research was conducted under the auspices of the Graduate School VLAG (Advanced studies in Food Technology, Agrobiotechnology, Nutrition and Health Sciences). Molecular effects of isoflavone supplementation Human intervention studies and quantitative models for risk assessment Vera van der Velpen Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 20 June 2014 at 13.30 p.m. in the Aula. Vera van der Velpen Molecular effects of isoflavone supplementation: Human intervention studies and quantitative models for risk assessment 154 pages PhD thesis, Wageningen University, Wageningen, NL (2014) With references, with summaries in Dutch and English ISBN: 978-94-6173-952-0 ABSTRact Background: Risk assessment can potentially be improved by closely linked experiments in the disciplines of epidemiology and toxicology. -
Identification of Novel Chemotherapeutic Strategies For
www.nature.com/scientificreports OPEN Identification of novel chemotherapeutic strategies for metastatic uveal melanoma Received: 17 November 2016 Paolo Fagone1, Rosario Caltabiano2, Andrea Russo3, Gabriella Lupo1, Accepted: 09 February 2017 Carmelina Daniela Anfuso1, Maria Sofia Basile1, Antonio Longo3, Ferdinando Nicoletti1, Published: 17 March 2017 Rocco De Pasquale4, Massimo Libra1 & Michele Reibaldi3 Melanoma of the uveal tract accounts for approximately 5% of all melanomas and represents the most common primary intraocular malignancy. Despite improvements in diagnosis and more effective local therapies for primary cancer, the rate of metastatic death has not changed in the past forty years. In the present study, we made use of bioinformatics to analyze the data obtained from three public available microarray datasets on uveal melanoma in an attempt to identify novel putative chemotherapeutic options for the liver metastatic disease. We have first carried out a meta-analysis of publicly available whole-genome datasets, that included data from 132 patients, comparing metastatic vs. non metastatic uveal melanomas, in order to identify the most relevant genes characterizing the spreading of tumor to the liver. Subsequently, the L1000CDS2 web-based utility was used to predict small molecules and drugs targeting the metastatic uveal melanoma gene signature. The most promising drugs were found to be Cinnarizine, an anti-histaminic drug used for motion sickness, Digitoxigenin, a precursor of cardiac glycosides, and Clofazimine, a fat-soluble iminophenazine used in leprosy. In vitro and in vivo validation studies will be needed to confirm the efficacy of these molecules for the prevention and treatment of metastatic uveal melanoma. Uveal melanoma is the most common primary intraocular cancer, and after the skin, the uveal tract is the second most common location for melanoma1. -
Identifying C-Mannosylatedproteins in RAW264.7 Cells Via in Vitro HSC70 Co-Immunoprecipitation Strategies Nicholas Ryan Kegley [email protected]
Marshall University Marshall Digital Scholar Theses, Dissertations and Capstones 2019 Identifying C-mannosylatedproteins in RAW264.7 cells via in vitro HSC70 Co-immunoprecipitation strategies Nicholas Ryan Kegley [email protected] Follow this and additional works at: https://mds.marshall.edu/etd Part of the Biochemistry Commons, and the Chemistry Commons Recommended Citation Kegley, Nicholas Ryan, "Identifying C-mannosylatedproteins in RAW264.7 cells via in vitro HSC70 Co-immunoprecipitation strategies" (2019). Theses, Dissertations and Capstones. 1217. https://mds.marshall.edu/etd/1217 This Thesis is brought to you for free and open access by Marshall Digital Scholar. It has been accepted for inclusion in Theses, Dissertations and Capstones by an authorized administrator of Marshall Digital Scholar. For more information, please contact [email protected], [email protected]. IDENTIFYING C-MANNOSYLATED PROTEINS IN RAW264.7 CELLS VIA IN VITRO HSC70 CO-IMMUNOPRECIPITATION STRATEGIES A thesis submitted to the Graduate College of Marshall University In Partial fulfillment of the requirements for the degree of Master of Science In Chemistry By Nicholas Ryan Kegley Approved by Dr. John F. Rakus, Committee Chairperson Dr. Derrick R. J. Kolling Dr. Elmer J. Price Marshall University May 2019 APPROVAL OF THESIS We, the faculty supervising the work of Nicholas Ryan Kegley, affirm that the thesis, Identifying C-mannosylated Proteins in RAW264.7 Cells via In Vitro Hsc70 Co-Immunoprecipitation Strategies, meets the high academic standards for original scholarship and creative work established by the Chemistry Program and the College of Science. This work also conforms to the editorial standards of our discipline and the Graduate College of Marshall University. -
Molecular Composition and Pharmacology of Store-Operated Calcium Entry in Sensory Neurons
Molecular composition and pharmacology of store-operated calcium entry in sensory neurons Alexandra-Silvia Hogea Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Biomedical Sciences September 2018 The candidate confirms that the work submitted is her own and that appropriate credit has been given where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. The right of Alexandra -Silvia Hogea to be identified as Author of this work has been asserted by in accordance with the Copyright, Designs and Patents Act 1988. ii Acknowledgements Firstly, I would like to express my appreciation and thanks to my supervisor, mentor and friend, Professor Nikita Gamper. It has been an amazing time and even if it was filled with challenges, I overcame them thanks to your continued support, guidance and optimism. I am extremely grateful to Professor David Beech and Dr. Lin Hua Jiang for their guidance at different stages during my early PhD years. I am very lucky to have met past and present Gamper lab members who contributed greatly to my development as a scientist, who welcomed me in their lives and made Leeds feel more like home. A massive thank you to Shihab Shah for the support and friendship, for being patient during hard times and for celebrating the achievements together. It has been quite a ride! I would also like to express my gratitude to Ewa Jaworska who first introduced me to immunohistochemistry at times when I thought nail polish is just for nails. -
Late First Trimester Circulating Microparticle Proteins Predict The
www.nature.com/scientificreports OPEN Late frst trimester circulating microparticle proteins predict the risk of preeclampsia < 35 weeks and suggest phenotypic diferences among afected cases Thomas F. McElrath1*, David E. Cantonwine1, Kathryn J. Gray1, Hooman Mirzakhani2, Robert C. Doss3, Najmuddin Khaja3, Malik Khalid3, Gail Page3, Brian Brohman3, Zhen Zhang4, David Sarracino6 & Kevin P. Rosenblatt3,5 We hypothesize that frst trimester circulating micro particle (CMP) proteins will defne preeclampsia risk while identifying clusters of disease subtypes among cases. We performed a nested case–control analysis among women with and without preeclampsia. Cases diagnosed < 34 weeks’ gestation were matched to controls. Plasma CMPs were isolated via size exclusion chromatography and analyzed using global proteome profling based on HRAM mass spectrometry. Logistic models then determined feature selection with best performing models determined by cross-validation. K-means clustering examined cases for phenotypic subtypes and biological pathway enrichment was examined. Our results indicated that the proteins distinguishing cases from controls were enriched in biological pathways involved in blood coagulation, hemostasis and tissue repair. A panel consisting of C1RL, GP1BA, VTNC, and ZA2G demonstrated the best distinguishing performance (AUC of 0.79). Among the cases of preeclampsia, two phenotypic sub clusters distinguished cases; one enriched for platelet degranulation and blood coagulation pathways and the other for complement and immune response- associated pathways (corrected p < 0.001). Signifcantly, the second of the two clusters demonstrated lower gestational age at delivery (p = 0.049), increased protein excretion (p = 0.01), more extreme laboratory derangement (p < 0.0001) and marginally increased diastolic pressure (p = 0.09). We conclude that CMP-associated proteins at 12 weeks’ gestation predict the overall risk of developing early preeclampsia and indicate distinct subtypes of pathophysiology and clinical morbidity. -
Nº Ref Uniprot Proteína Péptidos Identificados Por MS/MS 1 P01024
Document downloaded from http://www.elsevier.es, day 26/09/2021. This copy is for personal use. Any transmission of this document by any media or format is strictly prohibited. Nº Ref Uniprot Proteína Péptidos identificados 1 P01024 CO3_HUMAN Complement C3 OS=Homo sapiens GN=C3 PE=1 SV=2 por 162MS/MS 2 P02751 FINC_HUMAN Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4 131 3 P01023 A2MG_HUMAN Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3 128 4 P0C0L4 CO4A_HUMAN Complement C4-A OS=Homo sapiens GN=C4A PE=1 SV=1 95 5 P04275 VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF PE=1 SV=4 81 6 P02675 FIBB_HUMAN Fibrinogen beta chain OS=Homo sapiens GN=FGB PE=1 SV=2 78 7 P01031 CO5_HUMAN Complement C5 OS=Homo sapiens GN=C5 PE=1 SV=4 66 8 P02768 ALBU_HUMAN Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 66 9 P00450 CERU_HUMAN Ceruloplasmin OS=Homo sapiens GN=CP PE=1 SV=1 64 10 P02671 FIBA_HUMAN Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2 58 11 P08603 CFAH_HUMAN Complement factor H OS=Homo sapiens GN=CFH PE=1 SV=4 56 12 P02787 TRFE_HUMAN Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3 54 13 P00747 PLMN_HUMAN Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2 48 14 P02679 FIBG_HUMAN Fibrinogen gamma chain OS=Homo sapiens GN=FGG PE=1 SV=3 47 15 P01871 IGHM_HUMAN Ig mu chain C region OS=Homo sapiens GN=IGHM PE=1 SV=3 41 16 P04003 C4BPA_HUMAN C4b-binding protein alpha chain OS=Homo sapiens GN=C4BPA PE=1 SV=2 37 17 Q9Y6R7 FCGBP_HUMAN IgGFc-binding protein OS=Homo sapiens GN=FCGBP PE=1 SV=3 30 18 O43866 CD5L_HUMAN CD5 antigen-like OS=Homo -
Mutation of Junctophilin Type 2 Associated with Hypertrophic Cardiomyopathy
J Hum Genet (2007) 52:543–548 DOI 10.1007/s10038-007-0149-y ORIGINAL ARTICLE Mutation of junctophilin type 2 associated with hypertrophic cardiomyopathy Yoshihisa Matsushita Æ Toru Furukawa Æ Hiroshi Kasanuki Æ Makoto Nishibatake Æ Yachiyo Kurihara Æ Atsushi Ikeda Æ Naoyuki Kamatani Æ Hiroshi Takeshima Æ Rumiko Matsuoka Received: 1 March 2007 / Accepted: 31 March 2007 / Published online: 3 May 2007 Ó The Japan Society of Human Genetics and Springer 2007 Abstract Junctophilin subtypes, designated as JPH1~4, showed statistical significance (4/296 HCM patients and 0/ are protein components of junctional complexes and play 472 control individuals, P=0.022). This result was still essential roles in cellular Ca2+ signaling in excitable cells. significant after Bonferroni’s correction for multiple com- Knockout mice lacking the cardiac-type Jph2 die of parisons (P=0.044). To the best of our knowledge, this is embryonic cardiac arrest, and the mutant cardiac myocytes the first report on JPH2 mutation associated with HCM. exhibit impaired formation of peripheral couplings and arrhythmic Ca2+ signaling caused by functional uncoupling Keywords Junctophilin Á Hypertrophic cardiomyopathy Á between dihydropyridine and ryanodine receptor channels. Ca2+ signaling Á Ryanodine receptor Á Junctional membrane Based on these observations, we hypothesized that muta- complexes Á Ca2+-induced Ca2+ release tions of JPH2 could cause human genetic cardiac diseases. Among 195 Japanese patients (148 index cases and 47 affected family members) with hypertrophic cardiomyop- Introduction athy (HCM), two heterozygous nonsynonymous nucleotide transitions, G505S and R436C, were newly found in JPH2. Functional communications between cell-surface and When Fisher’s exact test was used to compare index cases intracellular channels are essential features of excitable with HCM to unrelated Japanese healthy controls in the cells (Berridge 2002). -
Regulated T Cell Pre-Mrna Splicing As Genetic Marker of T Cell Suppression
Regulated T cell pre-mRNA splicing as genetic marker of T cell suppression by Boitumelo Mofolo Thesis presented for the degree of Master of Science (Bioinformatics) Institute of Infectious Disease and Molecular Medicine University of Cape Town (UCT) Supervisor: Assoc. Prof. Nicola Mulder August 2012 University of Cape Town The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University Declaration I, Boitumelo Mofolo, declare that all the work in this thesis, excluding that has been cited and referenced, is my own. Signature Signature Removed Boitumelo Mofolo University of Cape Town Copyright©2012 University of Cape Town All rights reserved 1 ABSTRACT T CELL NORMAL T CELL SUPPRESSION p110 p110 MV p85 PI3K AKT p85 PI3K PHOSPHORYLATION NO PHOSHORYLATION HIV cytoplasm HCMV LCK-011 PRMT5-006 SHIP145 SIP110 RV LCK-010 VCL-204 ATM-016 PRMT5-018 ATM-002 CALD1-008 LCK-006 MXI1-001 VCL-202 NRP1-201 MXI1-007 CALD1-004 nucleus Background: Measles is a highly contagious disease that mainly affects children and according to the World Health Organisation (WHO), was responsible for over 164000 deaths in 2008, despite the availability of a safe and cost-effective vaccine [56]. The Measles virus (MV) inactivates T- cells, rendering them dysfunctional, and results in virally induced immunosuppression which shares certain features with thatUniversity induced by HIV. -
An Expanded Proteome of Cardiac T-Tubules☆
Cardiovascular Pathology 42 (2019) 15–20 Contents lists available at ScienceDirect Cardiovascular Pathology Original Article An expanded proteome of cardiac t-tubules☆ Jenice X. Cheah, Tim O. Nieuwenhuis, Marc K. Halushka ⁎ Department of Pathology, Division of Cardiovascular Pathology, Johns Hopkins University SOM, Baltimore, MD, USA article info abstract Article history: Background: Transverse tubules (t-tubules) are important structural elements, derived from sarcolemma, found Received 27 February 2019 on all striated myocytes. These specialized organelles create a scaffold for many proteins crucial to the effective Received in revised form 29 April 2019 propagation of signal in cardiac excitation–contraction coupling. The full protein composition of this region is un- Accepted 17 May 2019 known. Methods: We characterized the t-tubule subproteome using 52,033 immunohistochemical images covering Keywords: 13,203 proteins from the Human Protein Atlas (HPA) cardiac tissue microarrays. We used HPASubC, a suite of Py- T-tubule fi Proteomics thon tools, to rapidly review and classify each image for a speci c t-tubule staining pattern. The tools Gene Cards, Caveolin String 11, and Gene Ontology Consortium as well as literature searches were used to understand pathways and relationships between the proteins. Results: There were 96 likely t-tubule proteins identified by HPASubC. Of these, 12 were matrisome proteins and 3 were mitochondrial proteins. A separate literature search identified 50 known t-tubule proteins. A comparison of the 2 lists revealed only 17 proteins in common, including 8 of the matrisome proteins. String11 revealed that 94 of 127 combined t-tubule proteins generated a single interconnected network. Conclusion: Using HPASubC and the HPA, we identified 78 novel, putative t-tubule proteins and validated 17 within the literature.