An Evaluation of Two-Photon Excitation Versus Confocal and Digital Deconvolution Fluorescence Microscopy Imaging in Xenopus Morphogenesis
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Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Fall 12-1-2017 Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections Fredrick Michael DeArmond Portland State University Let us know how access to this document benefits ouy . Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Physics Commons Recommended Citation DeArmond, Fredrick Michael, "Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections" (2017). Dissertations and Theses. Paper 4036. 10.15760/etd.5920 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. For more information, please contact [email protected]. Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections by Fredrick Michael DeArmond A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Applied Physics Dissertation Committee: Erik J. Sánchez, Chair Erik Bodegom Ralf Widenhorn Robert Strongin Portland State University 2017 ABSTRACT As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes increased interest in and demand for robust non-linear fluorescent markers, and characterization of the associated tool set. -
Second Harmonic Imaging Microscopy
170 Microsc Microanal 9(Suppl 2), 2003 DOI: 10.1017/S143192760344066X Copyright 2003 Microscopy Society of America Second Harmonic Imaging Microscopy Leslie M. Loew,* Andrew C. Millard,* Paul J. Campagnola,* William A. Mohler,* and Aaron Lewis‡ * Center for Biomedical Imaging Technology, University of Connecticut Health Center, Farmington, CT 06030-1507 USA ‡ Division of Applied Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel Second Harmonic Generation (SHG) has been developed in our laboratories as a high- resolution non-linear optical imaging microscopy (“SHIM”) for cellular membranes and intact tissues. SHG is a non-linear process that produces a frequency doubling of the intense laser field impinging on a material with a high second order susceptibility. It shares many of the advantageous features for microscopy of another more established non-linear optical technique: two-photon excited fluorescence (TPEF). Both are capable of optical sectioning to produce 3D images of thick specimens and both result in less photodamage to living tissue than confocal microscopy. SHG is complementary to TPEF in that it uses a different contrast mechanism and is most easily detected in the transmitted light optical path. It also does not arise via photon emission from molecular excited states, as do both 1- and 2-photon excited fluorescence. SHG of intrinsic highly ordered biological structures such as collagen has been known for some time but only recently has the full potential of high resolution 3D SHIM been demonstrated on live cells and tissues. For example, Figure 1 shows SHIM from microtubules in a living organism, C. elegans. The images were obtained from a transgenic nematode that expresses a ß-tubulin-green fluorescent protein fusion and Figure 1 also shows the TPEF image from this molecule for comparison. -
Resolving Power
The 5 I’s of Culturing Microbes • Inoculation • Isolation • Incubation • Inspection • Identification 8/18/12 MDufilho 1 Table 4.1 Metric Units of Length 8/18/12 MDufilho 2 Microscopy • General Principles of Microscopy – Wavelength of radiation – Magnification – Resolution – Contrast 8/18/12 MDufilho 3 Figure 4.1 The electromagnetic spectrum 400 nm 700 nm Visible light X UV Infra- Micro- Radio waves and Gamma rays rays light red wave Television Increasing wavelength 10–12m 10–8m 10–4m 100m 103m Crest One wavelength Trough Increasing resolving power 8/18/12 MDufilho 4 Figure 4.2 Light refraction and image magnification by a convex glass lens-overview Light Air Glass Focal point Specimen Convex Inverted, lens reversed, and enlarged 8/18/12 MDufilho image 5 Principles of Light Microscopy • Magnification occurs in two phases – – The objective lens forms the magnified real image – The real image is projected to the ocular where it is magnified again to form the virtual image • Total magnification of the final image is a product of the separate magnifying powers of the two lenses power of objective x power of ocular = total magnification 8/18/12 MDufilho 6 8/18/12 MDufilho 7 Resolution Resolution defines the capacity to distinguish or separate two adjacent objects – resolving power – Function of wavelength of light that forms the image along with characteristics of objectives • Visible light wavelength is 400 nm–750 nm • Numerical aperture of lens ranges from 0.1 to 1.25 • Oil immersion lens requires the use of oil to prevent refractive loss -
Multiphoton Microscopy
Living up to Life Multiphoton Microscopy 1 Jablonski Diagram: Living up to Life Nonlinear Optical Microscopy F.- Helmchen, W. Denk, Deep tissue two-photon microscopy, Nat. Methods 2, 932-940 2 Typical Samples – Living up to Life Small Dimensions & Highly Scattering • Somata 10-30 µm • Dendrites 1-5 µm • Spines ~0.5 µm • Axons 1-2 µm ls ~ 50-100 µm (@ 630 nm) ls ~ 200 µm (@ 800 nm) T. Nevian Institute of Physiology University of Bern, Switzerland F.- Helmchen, W. Denk Deep tissue two-photon microscopy. Nat. Methods 2, 932-940 3 Why Multiphoton microscopy? Living up to Life • Today main challenge: To go deeper into samples for improved studies of cells, organs or tissues, live animals Less photodamage, i.e. less bleaching and phototoxicity • Why is it possible? Due to the reduced absorption and scattering of the excitation light 4 The depth limit Living up to Life • Achievable depth: ~ 300 – 600 µm • Maximum imaging depth depends on: – Available laser power – Scattering mean-free-path – Tissue properties • Density properties • Microvasculature organization • Cell-body arrangement • Collagen / myelin content – Specimen age – Collection efficiency Acute mouse brain sections containing YFP neurons,maximum projection, Z stack: 233 m Courtesy: Dr Feng Zhang, Deisseroth laboratory, Stanford University, USA Page 5 What is Two‐Photon Microscopy? Living up to Life A 3-dimensional imaging technique in which 2 photons are used to excite fluorescence emission exciting photon emitted photon S1 Simultaneous absorption of 2 longer wavelength photons to -
Adaptive Optics in Microscopy
Downloaded from http://rsta.royalsocietypublishing.org/ on February 3, 2015 Phil. Trans. R. Soc. A (2007) 365, 2829–2843 doi:10.1098/rsta.2007.0013 Published online 13 September 2007 Adaptive optics in microscopy BY MARTIN J. BOOTH* Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK The imaging properties of optical microscopes are often compromised by aberrations that reduce image resolution and contrast. Adaptive optics technology has been employed in various systems to correct these aberrations and restore performance. This has required various departures from the traditional adaptive optics schemes that are used in astronomy. This review discusses the sources of aberrations, their effects and their correction with adaptive optics, particularly in confocal and two-photon microscopes. Different methods of wavefront sensing, indirect aberration measurement and aberration correction devices are discussed. Applications of adaptive optics in the related areas of optical data storage, optical tweezers and micro/nanofabrication are also reviewed. Keywords: adaptive optics; aberrations; confocal microscopy; multiphoton microscopy; optical data storage; optical tweezers 1. Introduction Optical microscopes are essential tools in many scientific fields. In the life sciences, they are widely used for the visualization of cellular structures and sub- cellular processes. Confocal and multiphoton microscopes are particularly important in this respect as they produce three-dimensional images of volumetric objects. However, the resolution of these microscopes is often adversely affected by the optical properties of the specimen itself. Spatial variations in the refractive index of the specimen introduce optical aberrations that compromise image quality. This is a particular problem when imaging deep into thick biological specimens. -
Fv1000 Fluoview
Confocal Laser Scanning Biological Microscope FV1000 FLUOVIEW FLUOVIEW—Always Evolving FLUOVIEW–—From Olympus is Open FLUOVIEW—More Advanced than Ever The Olympus FLUOVIEW FV1000 confocal laser scanning microscope delivers efficient and reliable performance together with the high resolution required for multi-dimensional observation of cell and tissue morphology, and precise molecular localization. The FV1000 incorporates the industry’s first dedicated laser light stimulation scanner to achieve simultaneous targeted laser stimulation and imaging for real-time visualization of rapid cell responses. The FV1000 also measures diffusion coefficients of intracellular molecules, quantifying molecular kinetics. Quite simply, the FLUOVIEW FV1000 represents a new plateau, bringing “imaging to analysis.” Olympus continues to drive forward the development of FLUOVIEW microscopes, using input from researchers to meet their evolving demands and bringing “imaging to analysis.” Quality Performance with Innovative Design FV10i 1 Imaging to Analysis ing up New Worlds From Imaging to Analysis FV1000 Advanced Deeper Imaging with High Resolution FV1000MPE 2 Advanced FLUOVIEW Systems Enhance the Power of Your Research Superb Optical Systems Set the Standard for Accuracy and Sensitivity. Two types of detectors deliver enhanced accuracy and sensitivity, and are paired with a new objective with low chromatic aberration, to deliver even better precision for colocalization analysis. These optical advances boost the overall system capabilities and raise performance to a new level. Imaging, Stimulation and Measurement— Advanced Analytical Methods for Quantification. Now equipped to measure the diffusion coefficients of intracellular molecules, for quantification of the dynamic interactions of molecules inside live cell. FLUOVIEW opens up new worlds of measurement. Evolving Systems Meet the Demands of Your Application. -
Optical Sectioning in Fluorescence Microscopy by Confocal and 2
Optical Sectioning in Fluorescence achieved with this methodology, Calcium sparks are microscopic calcium release Downloaded from events inside living muscle cells and their properties are giving new insight into Microscopy by Confocal and how excitation leads to contraction (Cannell et al., 1995; Lopez-Lopez et al,, 2-Photon Molecular Excitation 1995; Gomez et al., 1997). Although the wide field microscope had been applied to calcium imaging since about 1985, calcium sparks had not been observed Techniques previously. This is probably because the presence of fluorescence from outside https://www.cambridge.org/core M.B. Cannell & C.Soeller the focal plane results in a marked loss of in-plane contrast for wide field St. George's Hospital Medical School, microscopy. (Note also that fluo-3 was used as the calcium indicator in these Cranmer Terrace, London SW17 ORE experiments as it has low fluorescence in the absence of calcium which also improves image contrast.) The calcium spark illustrates the high sensitivity of Confocal Microscopy current confocal optical methods - the calcium spark finally occupies about 10 fl Fluorescence microscopy has proved to be an invaluable tool for 14 4 (10" l) and represents calcium binding to only -10 indicator molecules, Until biomedical science since it is possible to visualise small quantities of labeled recently, the laser scanning confocal microscope has been the only instrument materials (such as intracellular ions and proteins) in both fixed and living that could measure fluorescence with a spatial resolution of about 0.4 x 0.4 x 0.8 cells, However, the conventional wide field fluorescence microscope suffers . -
Two-Photon Excitation Fluorescence Microscopy
P1: FhN/ftt P2: FhN July 10, 2000 11:18 Annual Reviews AR106-15 Annu. Rev. Biomed. Eng. 2000. 02:399–429 Copyright c 2000 by Annual Reviews. All rights reserved TWO-PHOTON EXCITATION FLUORESCENCE MICROSCOPY PeterT.C.So1,ChenY.Dong1, Barry R. Masters2, and Keith M. Berland3 1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139; e-mail: [email protected] 2Department of Ophthalmology, University of Bern, Bern, Switzerland 3Department of Physics, Emory University, Atlanta, Georgia 30322 Key Words multiphoton, fluorescence spectroscopy, single molecule, functional imaging, tissue imaging ■ Abstract Two-photon fluorescence microscopy is one of the most important re- cent inventions in biological imaging. This technology enables noninvasive study of biological specimens in three dimensions with submicrometer resolution. Two-photon excitation of fluorophores results from the simultaneous absorption of two photons. This excitation process has a number of unique advantages, such as reduced specimen photodamage and enhanced penetration depth. It also produces higher-contrast im- ages and is a novel method to trigger localized photochemical reactions. Two-photon microscopy continues to find an increasing number of applications in biology and medicine. CONTENTS INTRODUCTION ................................................ 400 HISTORICAL REVIEW OF TWO-PHOTON MICROSCOPY TECHNOLOGY ...401 BASIC PRINCIPLES OF TWO-PHOTON MICROSCOPY ..................402 Physical Basis for Two-Photon Excitation ............................ -
Innovations of Wide-Field Optical-Sectioning
Innovations of wide-field optical-sectioning fluorescence microscopy: toward high-speed volumetric bio-imaging with simplicity Thesis by Jiun-Yann Yu In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy California Institute of Technology Pasadena, California 2014 (Defended March 25, 2014) ii c 2014 Jiun-Yann Yu All Rights Reserved iii Acknowledgements Firstly, I would like to thank my thesis advisor, Professor Chin-Lin Guo, for all of his kind advice and generous financial support during these five years. I would also like to thank all of the faculties in my thesis committee: Professor Geoffrey A. Blake, Professor Scott E. Fraser, and Professor Changhuei Yang, for their guidance on my way towards becoming a scientist. I would like to specifically thank Professor Blake, and his graduate student, Dr. Daniel B. Holland, for their endless kindness, enthusiasms and encouragements with our collaborations, without which there would be no more than 10 pages left in this thesis. Dr. Thai Truong of Prof. Fraser's group and Marco A. Allodi of Professor Blake's group are also sincerely acknowledged for contributing to this collaboration. All of the members of Professor Guo's group at Caltech are gratefully acknowledged. I would like to thank our former postdoctoral scholar Dr. Yenyu Chen for generously teaching me all the engineering skills I need, and passing to me his pursuit of wide-field optical-sectioning microscopy. I also thank Dr. Mingxing Ouyang for introducing me the basic concepts of cell biology and showing me the basic techniques of cell-biology experiments. I would like to pay my gratefulness to our administrative assistant, Lilian Porter, not only for her help on administrative procedures, but also for her advice and encouragement on my academic career in the future. -
SPARQ-Ed Risk Assessment Sheet : Immunofluorescence
SPARQ-ed Risk Assessment Sheet : Immunofluorescence Hazard Analyse / Evaluate Risk Overall Risk Category Description of Risk Source Current Controls Event Category Consequences Exposure Probability (see explanation on last page) Exposure PPE worn (gloves, closed Prob footwear, and safety Chemical exposure - VR R U O F C Exposure to Chemical Agents : Risk of Unusual : goggles provided). Use body contact, spills Unusual but eye and skin exposure to chemicals Immuno- AC Low Low Low Low Mod Subs of potentially harmful and splash and Other Contact Minor : General Possible: Less likely (such as fixation / permeabilisation fluorescence QP Low Low Low Low Low Mod Chemical chemicals/substances in inhalation (eg. 4% with Chemical or chemicals used would to occur with the buffer containing 4% staining not a UP Low Low Low Low Low Low fume cupboard/safety paraformaldehyde is Substance be irritants only. control measures but paraformaldehyde) throughout the common cabinet. MSDS available. irritant to eyes and not impossible. RP Low Low Low Low Low Low staining procedure. procedure. Well documented skin). C Low Low Low Low Low Low procedures. PI Low Low Low Low Low Low Personal precaution Exposure procedures to be Prob followed in case of VR R U O F C Sharps : Immunoflourescence is injury. PPE worn Sharps injury (cuts or Unusual : AC Low Low Low Low Mod Subs generally performed with sections on (wearing gloves, closed slicing of fingers) Immuno- Conceivable : Sharps slides or with cells on coverslips. shoes, lab coat and from broken Hitting Objects Minor : May require fluorescence injury is likely to QP Low Low Low Low Low Mod Immunofluorescence staining of cells Mechanical safety goggles are coverslips or pointed with Part of first aid for minor cuts. -
Practical Tips for Two-Photon Microscopy
Appendix 1 Practical Tips for Two-Photon Microscopy Mark B. Cannell, Angus McMorland, and Christian Soeller INTRODUCTION blue and green diode lasers. To provide an alignment beam to which the external laser can be aligned, light from this reference As is clear from a number of the chapters in this volume, 2-photon laser needs to be bounced back through the microscope optical microscopy offers many advantages, especially for living-cell train and out through the external coupling port: studies of thick specimens such as brain slices and embryos. CAUTION: Before you switch on the reference laser in this However, these advantages must be balanced against the fact that configuration make sure that all PMTs are protected and/or commercial multiphoton instrumentation is much more costly than turned off. the equipment used for confocal or widefield/deconvolution. Given Place a front-surface mirror on the stage of the microscope and these two facts, it is not surprising that, to an extent much greater focus onto the reflective surface using an air objective for conve- than is true of confocal, many researchers have decided to add a nience (at sharp focus, you should be able to see scratches or other femtosecond (fs) pulsed near-IR laser to a scanner and a micro- mirror defects through the eyepieces). The idea of this method is scope to make their own system (Soeller and Cannell, 1996; Tsai to cause the reference laser beam to bounce back through the et al., 2002; Potter, 2005). Even those who purchase a commercial optical train and emerge from the other laser port. -
Imaging with Second-Harmonic Generation Nanoparticles
1 Imaging with Second-Harmonic Generation Nanoparticles Thesis by Chia-Lung Hsieh In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy California Institute of Technology Pasadena, California 2011 (Defended March 16, 2011) ii © 2011 Chia-Lung Hsieh All Rights Reserved iii Publications contained within this thesis: 1. C. L. Hsieh, R. Grange, Y. Pu, and D. Psaltis, "Three-dimensional harmonic holographic microcopy using nanoparticles as probes for cell imaging," Opt. Express 17, 2880–2891 (2009). 2. C. L. Hsieh, R. Grange, Y. Pu, and D. Psaltis, "Bioconjugation of barium titanate nanocrystals with immunoglobulin G antibody for second harmonic radiation imaging probes," Biomaterials 31, 2272–2277 (2010). 3. C. L. Hsieh, Y. Pu, R. Grange, and D. Psaltis, "Second harmonic generation from nanocrystals under linearly and circularly polarized excitations," Opt. Express 18, 11917–11932 (2010). 4. C. L. Hsieh, Y. Pu, R. Grange, and D. Psaltis, "Digital phase conjugation of second harmonic radiation emitted by nanoparticles in turbid media," Opt. Express 18, 12283–12290 (2010). 5. C. L. Hsieh, Y. Pu, R. Grange, G. Laporte, and D. Psaltis, "Imaging through turbid layers by scanning the phase conjugated second harmonic radiation from a nanoparticle," Opt. Express 18, 20723–20731 (2010). iv Acknowledgements During my five-year Ph.D. studies, I have thought a lot about science and life, but I have never thought of the moment of writing the acknowledgements of my thesis. At this moment, after finishing writing six chapters of my thesis, I realize the acknowledgment is probably one of the most difficult parts for me to complete.