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Durio Zibethinus
1 The Draft Genome of Tropical Fruit Durian (Durio zibethinus) 2 1,2,3,4,5,6# 2,7 2,7 3 3 Bin Tean Teh , Kevin Lim *, Chern Han Yong *, Cedric Chuan Young Ng *, Sushma Ramesh 8,14,15,16 3 2,4, 7 9 10 4 Rao , Vikneswari Rajasegaran , Weng Khong Lim , Choon Kiat Ong , Ki Chan , Vincent Kin 11 12 8,14,15,16,17 2,4,7 13 5 Yuen Cheng , Poh Sheng Soh , Sanjay Swarup , Steven G Rozen , Niranjan Nagarajan , 1,2,4,5,13# 6 Patrick Tan 7 8 1 9 Thorn Biosystems Pte Ltd, Singapore 2 10 Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore 3 11 Laboratory of Cancer Epigenome, Division of Medical Science, National Cancer Centre, Singapore 4 12 SingHealth/Duke-NUS Institute of Precision Medicine, National Heart Centre, Singapore 5 13 Cancer Science Institute of Singapore, National University of Singapore, Singapore 6 14 Institute of Molecular and Cellular Biology, Singapore 7 15 Centre for Computational Biology, Duke-NUS Medical School, Singapore 8 16 Department of Biological Sciences, National University of Singapore, Singapore 9 17 Lymphoma Genomic Translational Research Laboratory, National Cancer Centre, Singapore 10 18 Global Databank, Singapore 11 19 Verdant Foundation, Hong Kong 12 20 Samsoney Group, Malaysia 13 21 Genome Institute of Singapore, Singapore 14 22 Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, 23 Singapore 15 24 Metabolites Biology Lab, National University of Singapore, Singapore 16 25 NUS Synthetic Biology for Clinical and Technological Innovation, Life Sciences Institute, National 26 University of Singapore, Singapore 17 27 NUS Environmental Research Institute, National University of Singapore, Singapore 28 29 30 * Denotes equal contribution 31 32 # Address correspondence: [email protected] (B.T.T.) or [email protected] 33 (P.T.) 34 2 35 Abstract 36 Durian (Durio zibethinus) is a South East Asian tropical plant species, well-known for its hefty spine- 37 covered fruit and notorious sulfury and onion-like odor. -
Phylogeny of the Tropical Tree Family Dipterocarpaceae Based on Nucleotide Sequences of the Chloroplast Rbcl Gene1
American Journal of Botany 86(8): 1182±1190. 1999. PHYLOGENY OF THE TROPICAL TREE FAMILY DIPTEROCARPACEAE BASED ON NUCLEOTIDE SEQUENCES OF THE CHLOROPLAST RBCL GENE1 S. DAYANANDAN,2,6 PETER S. ASHTON,3 SCOTT M. WILLIAMS,4 AND RICHARD B. PRIMACK2 2Biology Department, Boston University, Boston, Massachusetts 02215; 3Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138; and 4Division of Biomedical Sciences, Meharry Medical College, 1005 D. B. Todd, Jr. Boulevard, Nashville, Tennessee 37208 The Dipterocarpaceae, well-known trees of the Asian rain forests, have been variously assigned to Malvales and Theales. The family, if the Monotoideae of Africa (30 species) and South America and the Pakaraimoideae of South America (one species) are included, comprises over 500 species. Despite the high diversity and ecological dominance of the Dipterocar- paceae, phylogenetic relationships within the family as well as between dipterocarps and other angiosperm families remain poorly de®ned. We conducted parsimony analyses on rbcL sequences from 35 species to reconstruct the phylogeny of the Dipterocarpaceae. The consensus tree resulting from these analyses shows that the members of Dipterocarpaceae, including Monotes and Pakaraimaea, form a monophyletic group closely related to the family Sarcolaenaceae and are allied to Malvales. The present generic and higher taxon circumscriptions of Dipterocarpaceae are mostly in agreement with this molecular phylogeny with the exception of the genus Hopea, which forms a clade with Shorea sections Anthoshorea and Doona. Phylogenetic placement of Dipterocarpus and Dryobalanops remains unresolved. Further studies involving repre- sentative taxa from Cistaceae, Elaeocarpaceae, Hopea, Shorea, Dipterocarpus, and Dryobalanops will be necessary for a comprehensive understanding of the phylogeny and generic limits of the Dipterocarpaceae. -
Primate Conservation No. 19
ISSN 0898-6207 PRIMATE CONSERVATION The Journal of the IUCN/SSC Primate Specialist Group Number 19 2003 Primate Conservation is produced and circulated courtesy of the Margot Marsh Biodiversity Founda- tion, the Center for Applied Biodiversity Science at Conservation International, the Los Angeles Zoo, and the Department of Anatomical Sciences of the State University of New York at Stony Brook. ISSN 0898-6207 Abbreviated title: Primate Conserv. June 2003 Front cover. Although Sri Lankan red lorises are far from cryptic, this flowering bush makes a scenic hiding place for this adult female Loris tardigradus tardigradus from Pitigala, Galle District. Photograph by K. A. I. Nekaris. A Word from the Chairman This, the 19th issue of Primate Conservation, has suffered a long delay in publication, arising to some extent from the increasingly significant role of the IUCN/SSC Primate Specialist Group newsletters (African Primates, Asian Primates, Lemur News and Neotropical Primates), which are themselves evolving into journals in their own right, but also related to uncertainty as to its future. Its production is informal, and each issue requires funding in direct competition with the newsletters. Primate Conservation has played a key role in allowing for the publication of highly significant conservation-related research, most especially distribution and status surveys, which were difficult to publish elsewhere, and with the added advantage of it being distributed for free. Today, however, the more formal subscription journals, notably the International Journal of Primatology, the official journal of the International Primatological Society (IPS), increasingly publish conservation-related research (note IJPs earmarking of the aye-aye with its “Vivamus” sign). -
Distribution of Flavonoids Among Malvaceae Family Members – a Review
Distribution of flavonoids among Malvaceae family members – A review Vellingiri Vadivel, Sridharan Sriram, Pemaiah Brindha Centre for Advanced Research in Indian System of Medicine (CARISM), SASTRA University, Thanjavur, Tamil Nadu, India Abstract Since ancient times, Malvaceae family plant members are distributed worldwide and have been used as a folk remedy for the treatment of skin diseases, as an antifertility agent, antiseptic, and carminative. Some compounds isolated from Malvaceae members such as flavonoids, phenolic acids, and polysaccharides are considered responsible for these activities. Although the flavonoid profiles of several Malvaceae family members are REVIEW REVIEW ARTICLE investigated, the information is scattered. To understand the chemical variability and chemotaxonomic relationship among Malvaceae family members summation of their phytochemical nature is essential. Hence, this review aims to summarize the distribution of flavonoids in species of genera namely Abelmoschus, Abroma, Abutilon, Bombax, Duboscia, Gossypium, Hibiscus, Helicteres, Herissantia, Kitaibelia, Lavatera, Malva, Pavonia, Sida, Theobroma, and Thespesia, Urena, In general, flavonols are represented by glycosides of quercetin, kaempferol, myricetin, herbacetin, gossypetin, and hibiscetin. However, flavonols and flavones with additional OH groups at the C-8 A ring and/or the C-5′ B ring positions are characteristic of this family, demonstrating chemotaxonomic significance. Key words: Flavones, flavonoids, flavonols, glycosides, Malvaceae, phytochemicals INTRODUCTION connate at least at their bases, but often forming a tube around the pistils. The pistils are composed of two to many connate he Malvaceae is a family of flowering carpels. The ovary is superior, with axial placentation, with plants estimated to contain 243 genera capitate or lobed stigma. The flowers have nectaries made with more than 4225 species. -
Plant Systematics in the Next 50 Years-Re-Mapping the New Frontier
TAXON50 - AUGUST2001 713 Plant systematics in the next 50 years-re-mapping the new frontier Kenneth J. Sytsma' & J. Chris Pires' Summary Sytsma, K. J. & Pires, J. C.: Plant systematicsin the next 50 years-re-mapping the new frontier.- Taxon50: 713-732. 2001. - ISSN0040-0262. In the historicalcontext of plantsystematics over the last 50 years, systematicsis examined in termsof where it is now, where it is headed,where it shouldbe, and how it shouldget there.Issues andconcerns of the pastdecades are still with us today.Molecular systematics has become the over-archingfield in systematics,but each of eight other areas (genome, chromosomes,morphology and anatomy, development,population biology, speciation, floristicsand monography,nomenclature and classification)are evaluated.A revolutionin systematicsis not necessaryfor the next 50 years in plantsystematics. What is neededis a re-mappingof our disciplinethat involves four elements for the futuregrowth and healthof botanical systematics:plant systematicsand its utility, dialogue with other disciplines, multi-disciplinarytraining, and a pluralisticviewpoint. Keywords:phylogenetics, pluralism, systematics, taxonomy. Introduction-looking back in order to look forward "These times were full of new discoveries and new techniques. There was widespread belief that we would soon fully understand the processes of micro- evolution and the origin of higher plant diversity, and be able to express this satisfactorily in our systematic arrangements." This optimistic sentiment well summarises the last decade or two in systematic biology, with allusions to the multitude of systematic and evolutionary tools now at our disposal and to the many exciting discoveries in diverse fields ranging from the origin of species (Rieseberg, 1998) to the evolutionary history and rise of angio- sperms (Qiu & al., 1999) and even land plants (Qiu & Palmer, 1999; Pryer & al., 2001). -
Studies on the Flora of Periyar Tiger Reserv
KFRI Research Report 150 STUDIES ON THE FLORA OF PERIYAR TIGER RESERV N. Sas idharan KERALA FOREST RESEARCH INSTITUTE PEECHI, THRISSUR July 1998 Pages: 558 CONTENTS Page File Index to Families r.150.2 Abstract r.150.3 1 Introduction i r.150.4 2 Study Area ii r.150.5 3 Method viii r.150.6 4 Results viii r.150.7 5 Discussion xix r.150.8 6 Families 1 r.150.9 7 References 555 r.150.10 Index to families ACANTHACEAE 290 COCHLOSPERMACEAE 16 AGAVACEAE 452 COMBRETACEAE 133 AIZOACEAE 160 COMMELINACEAE 459 ALANGIACEAE 166 CONNARACEAE 85 AMARANTHACEAE 327 CONVOLVULACEAE 262 AMARYLLIDACEAE 452 CORNACEAE 166 ANACARDIACEAE 81 CRASSULACEAE 130 ANCISTROCLADACEAE 28 CUCURBITACEAE 153 ANNONACEAE 3 CYPERACEAE 481 APIACEAE 161 DATISCACEAE 158 APOCYNACEAE 240 DICHAPETALACEAE 62 AQUIFOLIACEAE 65 DILLENIACEAE 2 ARACEAE 471 DIOSCOREACEAE 453 ARALIACEAE 164 DIPTEROCARPACEAE 27 ARECACEAE 466 DROSERACEAE 131 ARISTOLOCHIACEAE 335 EBENACEAE 229 ASCLEPIADACEAE 246 ELAEGNACEAE 354 ASTERACEAE 190 ELAEOCARPACEAE 41 BALANOPHORACEAE 361 ERICACEAE 219 BALSAMINACEAE 44 ERIOCAULACEAE 477 BEGONIACEAE 159 ERYTHROXYLACEAE 42 BIGNONIACEAE 289 EUPHORBIACEAE 361 BOMBACACEAE 34 FABACEAE (LEGUMINOSAE) 86 BORAGINACEAE 260 FLACOURTIACEAE 17 BRASSICACEAE 13 GENTIANACEAE 256 BUDDLEJACEAE 256 GESNERIACEAE 287 BURMANNIACEAE 396 HAEMODORACEAE 451 BURSERACEAE 56 HALORAGACEAE 132 BUXACEAE 361 HIPPOCRATEACEAE 69 CAMPANULACEAE 215 HYDROCHARITACEAE 396 CANNABACEAE 389 HYPERICACEAE 23 CAPPARIDACEAE 14 HYPOXIDACEAE 453 CAPRIFOLIACEAE 166 ICACINACEAE 63 CARYOPHYLLACEAE 22 JUNCACEAE 466 CELASTRACEAE -
Ecosystem Services Provided by Bats
Ann. N.Y. Acad. Sci. ISSN 0077-8923 ANNALS OF THE NEW YORK ACADEMY OF SCIENCES Issue: The Year in Ecology and Conservation Biology Ecosystem services provided by bats Thomas H. Kunz,1 Elizabeth Braun de Torrez,1 Dana Bauer,2 Tatyana Lobova,3 and Theodore H. Fleming4 1Center for Ecology and Conservation Biology, Department of Biology, Boston University, Boston, Massachusetts. 2Department of Geography, Boston University, Boston, Massachusetts. 3Department of Biology, Old Dominion University, Norfolk, Virginia. 4Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona Address for correspondence: Thomas H. Kunz, Ph.D., Center for Ecology and Conservation Biology, Department of Biology, Boston University, Boston, MA 02215. [email protected] Ecosystem services are the benefits obtained from the environment that increase human well-being. Economic valuation is conducted by measuring the human welfare gains or losses that result from changes in the provision of ecosystem services. Bats have long been postulated to play important roles in arthropod suppression, seed dispersal, and pollination; however, only recently have these ecosystem services begun to be thoroughly evaluated. Here, we review the available literature on the ecological and economic impact of ecosystem services provided by bats. We describe dietary preferences, foraging behaviors, adaptations, and phylogenetic histories of insectivorous, frugivorous, and nectarivorous bats worldwide in the context of their respective ecosystem services. For each trophic ensemble, we discuss the consequences of these ecological interactions on both natural and agricultural systems. Throughout this review, we highlight the research needed to fully determine the ecosystem services in question. Finally, we provide a comprehensive overview of economic valuation of ecosystem services. -
Helicteres Prostrata (Malvaceae), a New Record for Thailand and Lectotypifications of H
THAI FOREST BULL., BOT. 47(1): 16–18. 2019. DOI https://doi.org/10.20531/tfb.2019.47.1.04 Helicteres prostrata (Malvaceae), a new record for Thailand and lectotypifications of H. poilanei and H. vinosa PRANOM CHANTARANOTHAI1,* & SEKSUN POOMPO2 ABSTRACT A new record, Helicteres prostrata in Thailand is described and illustrated. Lectotypes of H. poilanei and H. vinosa are also selected. KEYWORDS: Helicteroideae, Phu Phan, typification. Accepted for publication: 31 January 2019. Published online: 13 February 2019 INTRODUCTION Prostrate herb with many branches; branches terete, brownish, glabrescent. Leaves coriaceous, Helicteres was described by Linnaeus (1753), alternate, oblong, oblong-ovate or ovate, 2–7 × with two species, H. angustifolia L. and H. isora L. 2–4 cm; base obtuse or rounded; margin entire, The genus of ca 60 species is in the family Malvaceae denticulate along apical half; apex acute; upper subfamily Helicteroideae (Bayer 1999; Simpson, surface green, glabrous; lower surface pale green, 2006) and occurs in tropical America and Asia hairy, brownish when dry; basal veins 5, lateral veins (Mabberley, 2008). It is characterized by stamens 4–7 pairs; petioles 2–5 mm long, hairy; stipules and pistil on an androgynophore, united sepals, 3–4 mm long, filiform or linear, hairy.Inflorescences oblong fruits with hairs, and wingless seeds. The axillary or terminal, 1–2 per axil, 2–5-flowered; first checklist ofHelicteres species in Thailand by peduncle 4–10 mm long, hairy; bract and epicalyx Craib (1925) included 11 species and two varieties. linear. Flowers with short pedicel. Calyx campanulate, Later, in the account of the genus Helicteres for the 5–7 mm long, 5-lobed, unequal, whitish green, hairy. -
Tropical Forests
1740 TROPICAL FORESTS / Bombacaceae in turn cause wild swings in the ecology and these Birks JS and Barnes RD (1990) Provenance Variation in swings themselves can sometimes prove to be beyond Pinus caribaea, P. oocarpa and P. patula ssp. tecunuma- control through management. In the exotic environ- nii. Tropical Forestry Papers no. 21. Oxford, UK: Oxford ments, it is impossible to predict or even conceive of Forestry Institute. the events that may occur and to know their Critchfield WB and Little EL (1966) Geographic Distribu- consequences. Introduction of diversity in the forest tion of the Pines of the World. Washington, DC: USDA Miscellaneous Publications. through mixed ages, mixed species, rotation of Duffield JW (1952) Relationships and species hybridization species, silvicultural treatment, and genetic variation in the genus Pinus. Zeitschrift fu¨r Forstgenetik und may make ecology and management more complex Forstpflanzenzuchtung 1: 93–100. but it will render the crop ecosystem much more Farjon A and Styles BT (1997) Pinus (Pinaceae). Flora stable, robust, and self-perpetuating and provide Neotropica Monograph no. 75. New York: New York buffers against disasters. The forester must treat crop Botanical Garden. protection as part of silvicultural planning. Ivory MH (1980) Ectomycorrhizal fungi of lowland tropical pines in natural forests and exotic plantations. See also: Pathology: Diseases affecting Exotic Planta- In: Mikola P (ed.) Tropical Mycorrhiza Research, tion Species; Diseases of Forest Trees. Temperate and pp. 110–117. Oxford, UK: Oxford University Press. Mediterranean Forests: Northern Coniferous Forests; Ivory MH (1987) Diseases and Disorders of Pines in the Southern Coniferous Forests. Temperate Ecosystems: Tropics. Overseas Research Publication no. -
First Steps Towards a Floral Structural Characterization of the Major Rosid Subclades
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 First steps towards a floral structural characterization of the major rosid subclades Endress, P K ; Matthews, M L Abstract: A survey of our own comparative studies on several larger clades of rosids and over 1400 original publications on rosid flowers shows that floral structural features support to various degrees the supraordinal relationships in rosids proposed by molecular phylogenetic studies. However, as many apparent relationships are not yet well resolved, the structural support also remains tentative. Some of the features that turned out to be of interest in the present study had not previously been considered in earlier supraordinal studies. The strongest floral structural support is for malvids (Brassicales, Malvales, Sapindales), which reflects the strong support of phylogenetic analyses. Somewhat less structurally supported are the COM (Celastrales, Oxalidales, Malpighiales) and the nitrogen-fixing (Cucurbitales, Fagales, Fabales, Rosales) clades of fabids, which are both also only weakly supported in phylogenetic analyses. The sister pairs, Cucurbitales plus Fagales, and Malvales plus Sapindales, are structurally only weakly supported, and for the entire fabids there is no clear support by the present floral structural data. However, an additional grouping, the COM clade plus malvids, shares some interesting features but does not appear as a clade in phylogenetic analyses. Thus it appears that the deepest split within eurosids- that between fabids and malvids - in molecular phylogenetic analyses (however weakly supported) is not matched by the present structural data. Features of ovules including thickness of integuments, thickness of nucellus, and degree of ovular curvature, appear to be especially interesting for higher level relationships and should be further explored. -
Food Habits of the Indian Giant Flying Squirrel (Petaurista Philippensis) in a Rain Forest Fragment, Western Ghats
Journal of Mammalogy, 89(6):1550–1556, 2008 FOOD HABITS OF THE INDIAN GIANT FLYING SQUIRREL (PETAURISTA PHILIPPENSIS) IN A RAIN FOREST FRAGMENT, WESTERN GHATS R. NANDINI* AND N. PARTHASARATHY Department of Ecology and Environmental Sciences, Pondicherry University, Puducherry, 605 014, India Present address of RN: National Institute of Advanced Studies, Indian Institute of Science campus, Downloaded from https://academic.oup.com/jmammal/article/89/6/1550/911817 by guest on 28 September 2021 Bangalore, 560 012, India Present address of RN: Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA We examined the feeding habits of the Indian giant flying squirrel (Petaurista philippensis) in a rain-forest fragment in southern Western Ghats, India, from December 1999 to March 2000. Flying squirrels consumed 4 major plant parts belonging to 9 plant species. Ficus racemosa was the most-eaten species (68.1%) during the period of the study, followed by Cullenia exarillata (9.57%) and Artocarpus heterophyllus (6.38%). The most commonly consumed food item was the fruit of F. racemosa (48.93%). Leaves formed an important component of the diet (32.97%) and the leaves of F. racemosa were consumed more than those of any other species. Flying squirrels proved to be tolerant of disturbance and exploited food resources at the fragment edge, including exotic planted species. Key words: edge, Ficus, fig fruits, folivore, Petaurista philippensis, rain-forest fragment, Western Ghats The adaptability of mammals allows them to exist in varied across the Western Ghats seem to increase with disturbance. environments and helps them to cope with habitat fragmenta- Ashraf et al. -
Appendix 1 Vernacular Names
Appendix 1 Vernacular Names The vernacular names listed below have been collected from the literature. Few have phonetic spellings. Spelling is not helped by the difficulties of transcribing unwritten languages into European syllables and Roman script. Some languages have several names for the same species. Further complications arise from the various dialects and corruptions within a language, and use of names borrowed from other languages. Where the people are bilingual the person recording the name may fail to check which language it comes from. For example, in northern Sahel where Arabic is the lingua franca, the recorded names, supposedly Arabic, include a number from local languages. Sometimes the same name may be used for several species. For example, kiri is the Susu name for both Adansonia digitata and Drypetes afzelii. There is nothing unusual about such complications. For example, Grigson (1955) cites 52 English synonyms for the common dandelion (Taraxacum officinale) in the British Isles, and also mentions several examples of the same vernacular name applying to different species. Even Theophrastus in c. 300 BC complained that there were three plants called strykhnos, which were edible, soporific or hallucinogenic (Hort 1916). Languages and history are linked and it is hoped that understanding how lan- guages spread will lead to the discovery of the historical origins of some of the vernacular names for the baobab. The classification followed here is that of Gordon (2005) updated and edited by Blench (2005, personal communication). Alternative family names are shown in square brackets, dialects in parenthesis. Superscript Arabic numbers refer to references to the vernacular names; Roman numbers refer to further information in Section 4.