Partial Purification and Determination of Some Properties of an Aminotransferase of Pea (Pisum
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Tryptophan Catabolism During Sporulation in Bacillus Cereus. Chandan Prasad Louisiana State University and Agricultural & Mechanical College
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1970 Tryptophan Catabolism During Sporulation in Bacillus Cereus. Chandan Prasad Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Prasad, Chandan, "Tryptophan Catabolism During Sporulation in Bacillus Cereus." (1970). LSU Historical Dissertations and Theses. 1804. https://digitalcommons.lsu.edu/gradschool_disstheses/1804 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. 71 - 34-36 PRASAD, Chandan, 1942- TRYPTOPHAN CATABOLISM DURING SPORULATION IN BACILLUS CEREUS. The Louisiana State University and Agricultural and Mechanical College, Ph.D., 1970 Microbiology University Microfilms, Inc., Ann Arbor, Michigan THIS DISSERTATION HAS BEEN MICROFILMED EXACTLY AS RECEIVED Tryptophan Catabolism During Sporulation in Bacillus cereus A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Microbiology by Chandan Prasad B. Sc. (Hons.) U. P. Agricultural University, India, 1964 M. Sc. U. P. Agricultural University, India, 1966 May, 1970 ACKNOWLEDGME NTS The author wishes to express his appreciation to the staff and faculty members of the Department of Microbiology, who in their own ways contri buted to the progress of this work. It is with great pleasure that acknowledgment is made to Dr. -
Lecture: 28 TRANSAMINATION, DEAMINATION and DECARBOXYLATION
Lecture: 28 TRANSAMINATION, DEAMINATION AND DECARBOXYLATION Protein metabolism is a key physiological process in all forms of life. Proteins are converted to amino acids and then catabolised. The complete hydrolysis of a polypeptide requires mixture of peptidases because individual peptidases do not cleave all peptide bonds. Both exopeptidases and endopeptidases are required for complete conversion of protein to amino acids. Amino acid metabolism The amino acids not only function as energy metabolites but also used as precursors of many physiologically important compounds such as heme, bioactive amines, small peptides, nucleotides and nucleotide coenzymes. In normal human beings about 90% of the energy requirement is met by oxidation of carbohydrates and fats. The remaining 10% comes from oxidation of the carbon skeleton of amino acids. Since the 20 common protein amino acids are distinctive in terms of their carbon skeletons, amino acids require unique degradative pathway. The degradation of the carbon skeletons of 20 amino acids converges to just seven metabolic intermediates namely. i. Pyruvate ii. Acetyl CoA iii. Acetoacetyl CoA iv. -Ketoglutarate v. Succinyl CoA vi. Fumarate vii. Oxaloacetate Pyruvate, -ketoglutarate, succinyl CoA, fumarate and oxaloacetate can serve as precursors for glucose synthesis through gluconeogenesis.Amino acids giving rise to these intermediates are termed as glucogenic. Those amino acids degraded to yield acetyl CoA or acetoacetate are termed ketogenic since these compounds are used to synthesize ketone bodies. Some amino acids are both glucogenic and ketogenic (For example, phenylalanine, tyrosine, tryptophan and threonine. Catabolism of amino acids The important reaction commonly employed in the breakdown of an amino acid is always the removal of its -amino group. -
Clostridium Sporogenes
(R)-Indolelactyl-CoA dehydratase, the key enzyme of tryptophan reduction to indolepropionate in Clostridium sporogenes Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. Nat.) dem Fachbereich Biologie der Philipps-Universität Marburg vorgelegt von Diplom-Chemikerin Huan Li aus JiLin VR. China Marburg/Lahn, 2014 Die Untersuchungen zur vorliegenden Arbeit wurden von September 2010 bis Dezember 2013 im Max-Planck-Institut für terrestrische Mikrobiologie, Marburg und im Laboratorium für Mikrobiologie, Fachbereich Biologie, der Philipps-Universität Marburg (Hochschulkennziffer: 1180) unter der Leitung von Prof. Dr. Wolfgang Buckel durchgeführt. Vom Fachbereich Biologie der Philipps-Universität Marburg als Dissertation am angenommen. Erstgutachter: Prof. Dr. Wolfgang Buckel Zweitgutachter: Prof. Dr. Johann Heider Tag der mündlichen Prüfung am: Für den gläubigen Menschen steht Gott am Anfang, für den Wissenschaftler am Ende aller seiner Überlegungen. Max Planck 献给最亲爱的爸爸妈妈 Index Zusammenfassung 1 Summary 2 Introduction 3 1. The role of gastrointestinal microbiota metabolites ........................................................... 3 2. Fermentation of amino acids and Stickland-reaction ......................................................... 5 3. Clostridium sporogenes ........................................................................................................... 7 4. 2-Hydroxyacyl-CoA dehydratases and the unusual radical H2O-elimination ................. 9 5. Family Ш CoA-transferases ............................................................................................... -
Transamination in Tumors, Fetal Tissues, and Regenerating Liver* Philip P
Transamination in Tumors, Fetal Tissues, and Regenerating Liver* Philip P. Cohen, M.D., and G. Leverne Hekhuis (From the Laboratory o~ Physiological Chemistry, Yale University School of Medicine, New Haven, Connecticut) (Received for publication June 9, I94I) von Euler and co-workers (22), on the basis of TISSUE SOURCES results of essentially qualitative experiments, first re- Tumors.--The mouse tumors employed in this in- ported that the transaminase activity ot~ tumors was vestigation were the following: low. These investigators, using Jensen sarcoma and normal muscle, measured the rate of disappearance of I. United States Public Health Service No. ~7-- oxaloacetic acid in the following reaction: originally described as a neuroepithelioma (20). 1 2. Sarcoma 37 .1 3. Yale No. xuan estrogen-induced ,) 1( + )-glutamic acid + oxaloacetic acid a mammary adenocarcinoma (5). 1 4. No. x5o9I-A - ~'b a-ketoglutaric acid + aspartic acid spontaneous mammary medullary adenocarcinoma In addition to studies of reaction I in tumors, Braun- (6) "1 5- No. 42--glioblastoma multiforme. 2 6. No. stein and Azarkh (2) studied the reaction: i o8--rhabdomyosarcoma. 2 The tumors were transplanted at regular intervals 2) glutamic acid+a-keto acid to insure a uniform supply. a-ketoglutaric acid + amino acid "-b- Fetal, kitten, and adult cat tissues.--Two pregnant cats provided the fetal tissue. The length of the preg- The amino acids investigated in the case of reaction nancy was uncertain, but was estimated to be in the 2b were the d- and l-forms of alanine, valine, leucine, last trimester in both instances. Hemihysterectomies and isoleucine. The rate of reaction za in which both were performed under nembutal anesthesia and 2 d(--)- and l(+)-glutamic acid were used, plus fetuses removed from each animal. -
Lecture 11 - Biosynthesis of Amino Acids
Lecture 11 - Biosynthesis of Amino Acids Chem 454: Regulatory Mechanisms in Biochemistry University of Wisconsin-Eau Claire 1 Introduction Biosynthetic pathways for amino acids, Text nucleotides and lipids are very old Biosynthetic (anabolic) pathways share common intermediates with the degradative (catabolic) pathways. The amino acids are the building blocks for proteins and other nitrogen-containing compounds 2 2 Introduction Nitrogen Fixation Text Reducing atmospheric N2 to NH3 Amino acid biosynthesis pathways Regulation of amino acid biosynthesis. Amino acids as precursors to other biological molecules. e.g., Nucleotides and porphoryns 3 3 Introduction Nitrogen fixation is carried out by a few Text select anaerobic micororganisms The carbon backbones for amino acids come from glycolysis, the citric acid cycle and the pentose phosphate pathway. The L–stereochemistry is enforced by transamination of α–keto acids 4 4 1. Nitrogen Fixation Microorganisms use ATP and ferredoxin to Text reduce atmospheric nitrogen to ammonia. 60% of nitrogen fixation is done by these microorganisms 15% of nitrogen fixation is done by lighting and UV radiation. 25% by industrial processes Fritz Habers (500°C, 300!atm) N2 + 3 H2 2 N2 5 5 1. Nitrogen Fixation Enzyme has both a reductase and a Text nitrogenase activity. 6 6 1.1 The Reductase (Fe protein) Contains a 4Fe-4S Text center Hydrolysis of ATP causes a conformational change that aids the transfer of the electrons to the nitrogenase domain (MoFe protein) 7 7 1.1 The Nitrogenase (MoFe Protein) The nitrogenase Text component is an α2β2 tetramer (240#kD) Electrons enter the P-cluster 8 8 1.1 The Nitrogenase (MoFe Protein) An Iron-Molybdenum cofactor for the Text nitrogenase binds and reduces the atmospheric nitrogen. -
Tryptophan Catabolism by Lactobacillus Spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 5-1998 Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese Sanjay Gummalla Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Food Chemistry Commons, Food Microbiology Commons, and the Food Processing Commons Recommended Citation Gummalla, Sanjay, "Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese" (1998). All Graduate Theses and Dissertations. 5454. https://digitalcommons.usu.edu/etd/5454 This Thesis is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. TRYPTOPHAN CATABOLISM BY LACTOBACILLUS SPP.: BIOCHEMISTRY AND IMPLICATIONS ON FLAVOR DEVELOPMENT IN REDUCED-FAT CHEDDAR CHEESE by Sanjay Gummalla A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE m Nutrition and Food Sciences Approved: UTAH STATE UNIVERSITY Logan, Utah 1998 11 Copyright © Sanjay Gummalla 1998 All Rights Reserved w ABSTRACT Tryptophan Catabolism by Lactobacillus spp. : Biochemistry and Implications on Flavor Development in Reduced-Fat Cheddar Cheese by Sanjay Gummalla, Master of Science Utah State University, 1998 Major Professor: Dr. Jeffery R. Broadbent Department: Nutrition and Food Sciences Amino acids derived from the degradation of casein in cheese serve as precursors for the generation of key flavor compounds. Microbial degradation of tryptophan (Trp) is thought to promote formation of aromatic compounds that impart putrid fecal or unclean flavors in cheese, but pathways for their production have not been established. -
Transamination What Is Transamination? Subhadipa 2020 • Important Method of Nitrogen Metabolism of Amino Acids
Subhadipa 2020 Transamination What is Transamination? Subhadipa 2020 • Important method of nitrogen metabolism of amino acids. • Transamination is the transfer of an amine group from an amino acid to a keto acid (amino acid without an amine group), thus creating a new amino acid and keto acid. • Transamination reactions combine reversible amination and deamination, and they mediate redistribution of amino groups among amino acids. • Transaminases (aminotransferases) are widely distributed in human tissues and are particularly active in heart muscle, liver, skeletal muscle, and kidney. • The general reaction of transamination is: Concerned enzyme • The reaction is catalyzed by transaminase or amino transferase. • Enzymes act on L-amino acid but not on D-isomers. • They occur both mitochondria and cytosol as separate enzyme. • There are many transferases, each acts on a particular amino acid and a particular keto acid. Amino and keto acid • All naturally occurring amino acids undergo transamination. • Exceptions include basic amino acids lysine, hydroxyl amino acids, serine and threonine and heterocyclic amino acids proline and hydroxyl-proline. • Keto acids like pyruvic acid, oxaloacetic acid and α- ketoglutaric acid are commonly involved. • Glyoxylate and glutamic γ semialdehyde may also act as amino- receptors in transamination. E-PLP Complex Subhadipa 2020 All transaminase reactions have the same mechanism and use pyridoxal phosphate (a derivative of vitamin B6). Pyridoxal phosphate is linked to the enzyme by formation of a Schiff base between its aldehyde group and the ε-amino group of a specific lysyl residue at the active site and held noncovalently through its positively charged nitrogen atom and the negatively charged phosphate group. -
Combined Network Analysis and Machine Learning Allows the Prediction of Metabolic Pathways from Tomato Metabolomics Data
ARTICLE https://doi.org/10.1038/s42003-019-0440-4 OPEN Combined network analysis and machine learning allows the prediction of metabolic pathways from tomato metabolomics data David Toubiana 1, Rami Puzis 2, Lingling Wen3, Noga Sikron3, Assylay Kurmanbayeva3, 1234567890():,; Aigerim Soltabayeva3, Maria del Mar Rubio Wilhelmi1, Nir Sade3,4, Aaron Fait3, Moshe Sagi3, Eduardo Blumwald 1 & Yuval Elovici2 The identification and understanding of metabolic pathways is a key aspect in crop improvement and drug design. The common approach for their detection is based on gene annotation and ontology. Correlation-based network analysis, where metabolites are arran- ged into network formation, is used as a complentary tool. Here, we demonstrate the detection of metabolic pathways based on correlation-based network analysis combined with machine-learning techniques. Metabolites of known tomato pathways, non-tomato pathways, and random sets of metabolites were mapped as subgraphs onto metabolite correlation networks of the tomato pericarp. Network features were computed for each subgraph, generating a machine-learning model. The model predicted the presence of the β-alanine- degradation-I, tryptophan-degradation-VII-via-indole-3-pyruvate (yet unknown to plants), the β-alanine-biosynthesis-III, and the melibiose-degradation pathway, although melibiose was not part of the networks. In vivo assays validated the presence of the melibiose- degradation pathway. For the remaining pathways only some of the genes encoding reg- ulatory enzymes were detected. 1 Department of Plant Sciences, University of California, Davis, CA, USA. 2 Telekom Innovation Labs, Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev, Beer Sheva, Israel. -
Amino Acid Catabolism
Amino Acid Catabolism • Dietary Proteins • Turnover of Protein • Cellular protein • Deamination • Urea cycle • Carbon skeletons of amino acids Amino Acid Metabolism •Metabolism of the 20 common amino acids is considered from the origins and fates of their: (1) Nitrogen atoms (2) Carbon skeletons •For mammals: Essential amino acids must be obtained from diet Nonessential amino acids - can be synthesized Amino Acid Catabolism • Amino acids from degraded proteins or from diet can be used for the biosynthesis of new proteins • During starvation proteins are degraded to amino acids to support glucose formation • First step is often removal of the α-amino group • Carbon chains are altered for entry into central pathways of carbon metabolism Dietary Proteins • Digested in intestine • by peptidases • transport of amino acids • active transport coupled with Na+ Protein Turnover • Proteins are continuously synthesized and degraded (turnover) (half-lives minutes to weeks) • Lysosomal hydrolysis degrades some proteins • Some proteins are targeted for degradation by a covalent attachment (through lysine residues) of ubiquitin (C terminus) • Proteasome hydrolyzes ubiquitinated proteins Turnover of Protein • Cellular protein • Proteasome degrades protein with Ub tags • T 1/2 determined by amino terminus residue • stable: ala, pro, gly, met greater than 20h • unstable: arg, lys, his, phe 2-30 min Ubibiquitin • Ubiquitin protein, 8.5 kD • highly conserved in yeast/humans • carboxy terminal attaches to ε-lysine amino group • Chains of 4 or more Ub molecules -
Characterization of Two Aromatic Amino Acid Aminotransferases and Production of Indoleacetic Acid in Azospirillum Strains
Soil Biol. Biochem.Vol. 26, No. 1, pp. 51-63, 1994 Pergamon Copyright 0 1994 Elsevier Science Ltd Printed in Great Britain. All rights reserved 0038-0717/94$6.00 + 0.00 CHARACTERIZATION OF TWO AROMATIC AMINO ACID AMINOTRANSFERASES AND PRODUCTION OF INDOLEACETIC ACID IN AZOSPIRILLUM STRAINS B. E. BACA, L. SOTO-URZUA, Y. G. XOCHIHUA-CORONAand A. CUERVO-GARCIA Department0 de Investigaciones Microbiologicas, Instituto de Ciencias, Universidad Autonoma de Puebla, Apartado Postal 1622, 72000 Puebla Pue, Mexico (Accepted 30 May 1993) Sunnnary-Experiments were made to quantify indole-3-acetic acid (IAA) excreted by different wild type strains of Azospirilhun spp. The microorganisms produce IAA, during the late stationary growth phase and show a significant increase in IAA production when tryptophan is present in the medium. Under these conditions with the A. brusilense strain UAP 14, we observed two aromatic amino acid aminotransferases. Their enzymatic activity and electrophoretic mobility under non-denaturating conditions were character- ized using cell-free extracts. Biochemical studies showed that these two enzymes can be distinguished by their electrophoretic mobilities. These enzymes are constitutively produced and they are not repressed by tyrosine or by tyrosine plus phenlylalanine. INTRODUCTION described in Pseudomonas savastanoi and Agrobac- terium tumefaciens. In Azospirillum this process is Soil bacteria of the genus Azospirillum live in associ- poorly understood. Hartman et al. (1983) and Zim- ation with the root zones of grasses and other plants, mer et al. (1988) identified indole-3-pyruvic acid among which are the economically-important culti- (IPyA), indole-3-acetaldehyde, and IAA as the sub- vated plants maize, wheat, barley, rye, oat and rice. -
O O2 Enzymes Available from Sigma Enzymes Available from Sigma
COO 2.7.1.15 Ribokinase OXIDOREDUCTASES CONH2 COO 2.7.1.16 Ribulokinase 1.1.1.1 Alcohol dehydrogenase BLOOD GROUP + O O + O O 1.1.1.3 Homoserine dehydrogenase HYALURONIC ACID DERMATAN ALGINATES O-ANTIGENS STARCH GLYCOGEN CH COO N COO 2.7.1.17 Xylulokinase P GLYCOPROTEINS SUBSTANCES 2 OH N + COO 1.1.1.8 Glycerol-3-phosphate dehydrogenase Ribose -O - P - O - P - O- Adenosine(P) Ribose - O - P - O - P - O -Adenosine NICOTINATE 2.7.1.19 Phosphoribulokinase GANGLIOSIDES PEPTIDO- CH OH CH OH N 1 + COO 1.1.1.9 D-Xylulose reductase 2 2 NH .2.1 2.7.1.24 Dephospho-CoA kinase O CHITIN CHONDROITIN PECTIN INULIN CELLULOSE O O NH O O O O Ribose- P 2.4 N N RP 1.1.1.10 l-Xylulose reductase MUCINS GLYCAN 6.3.5.1 2.7.7.18 2.7.1.25 Adenylylsulfate kinase CH2OH HO Indoleacetate Indoxyl + 1.1.1.14 l-Iditol dehydrogenase L O O O Desamino-NAD Nicotinate- Quinolinate- A 2.7.1.28 Triokinase O O 1.1.1.132 HO (Auxin) NAD(P) 6.3.1.5 2.4.2.19 1.1.1.19 Glucuronate reductase CHOH - 2.4.1.68 CH3 OH OH OH nucleotide 2.7.1.30 Glycerol kinase Y - COO nucleotide 2.7.1.31 Glycerate kinase 1.1.1.21 Aldehyde reductase AcNH CHOH COO 6.3.2.7-10 2.4.1.69 O 1.2.3.7 2.4.2.19 R OPPT OH OH + 1.1.1.22 UDPglucose dehydrogenase 2.4.99.7 HO O OPPU HO 2.7.1.32 Choline kinase S CH2OH 6.3.2.13 OH OPPU CH HO CH2CH(NH3)COO HO CH CH NH HO CH2CH2NHCOCH3 CH O CH CH NHCOCH COO 1.1.1.23 Histidinol dehydrogenase OPC 2.4.1.17 3 2.4.1.29 CH CHO 2 2 2 3 2 2 3 O 2.7.1.33 Pantothenate kinase CH3CH NHAC OH OH OH LACTOSE 2 COO 1.1.1.25 Shikimate dehydrogenase A HO HO OPPG CH OH 2.7.1.34 Pantetheine kinase UDP- TDP-Rhamnose 2 NH NH NH NH N M 2.7.1.36 Mevalonate kinase 1.1.1.27 Lactate dehydrogenase HO COO- GDP- 2.4.1.21 O NH NH 4.1.1.28 2.3.1.5 2.1.1.4 1.1.1.29 Glycerate dehydrogenase C UDP-N-Ac-Muramate Iduronate OH 2.4.1.1 2.4.1.11 HO 5-Hydroxy- 5-Hydroxytryptamine N-Acetyl-serotonin N-Acetyl-5-O-methyl-serotonin Quinolinate 2.7.1.39 Homoserine kinase Mannuronate CH3 etc. -
Chapter-Vi Protein Metabolism
CHAPTER-VI PROTEIN METABOLISM TRANSAMINATION OF AMINO ACIDS Transaminases catalyze the transfer of -NH2 groups from the amino acids, onto alpha- ketoglutarate. Many different transaminases are known, and they are generally of broad specificity for amino acids (that is, one enzyme can accept as substrates two or more different amino acids). All have the same cofactor requirement - pyridoxal phosphate (vitamin B6). (Two amino acids can be directly deaminated: Serine and Threonine. They do not undergo this process of transamination.) Mechanism of transamination PLP plays a central role here in the interconversion of an amino acid and an alpha-keto acid. (1) Transaminase binds pyridoxal phosphate in a Schiff-base link to a Lysine residue of enzyme (the attachment is to the epsilon-amino group of the Lysine). This forms an "aldimine". (2) As a new substrate substrate enters the active site, its amino group displaces the -NH2 of active site Lysine. Then a new Schiff-base link is formed to the alpha-amino group of the substrate, as the active site Lysine moves aside. (3) There is an electronic rearrangement resulting in shifting the double bond to form a "ketimine". (4) This is followed by hydrolysis to release PMP and an alpha-keto acid. (5) PMP combines with alpha-ketoglutarate in a reversal of steps 1-4. The net result is transfer of an amino group to alpha-ketoglutarate, and release of glutamate, while regenerating the PLP- enzyme complex. DEAMINATION OF AMINO ACIDS Introduction: Deamination is also an oxidative reaction that occurs under aerobic conditions in all tissues but especially the liver.