A Preliminary Catalog of the Lichen-Forming Fungi of Nebraska
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Checklist of Calicioid Lichens and Fungi for Genera with Members in Temperate Western North America Draft: 2012-03-13
Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Checklist of Calicioid Lichens and Fungi For Genera with Members in Temperate Western North America Draft: 2012-03-13 by E. B. Peterson Calicium abietinum, EBP#4640 1 Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Genera Acroscyphus Lév. Brucea Rikkinen Calicium Pers. Chaenotheca Th. Fr. Chaenothecopsis Vainio Coniocybe Ach. = Chaenotheca "Cryptocalicium" – potentially undescribed genus; taxonomic placement is not known but there are resemblances both to Mycocaliciales and Onygenales Cybebe Tibell = Chaenotheca Cyphelium Ach. Microcalicium Vainio Mycocalicium Vainio Phaeocalicium A.F.W. Schmidt Sclerophora Chevall. Sphinctrina Fr. Stenocybe (Nyl.) Körber Texosporium Nádv. ex Tibell & Hofsten Thelomma A. Massal. Tholurna Norman Additional genera are primarily tropical, such as Pyrgillus, Tylophoron About the Species lists Names in bold are believed to be currently valid names. Old synonyms are indented and listed with the current name following (additional synonyms can be found in Esslinger (2011). Names in quotes are nicknames for undescribed species. Names given within tildes (~) are published, but may not be validly published. Underlined species are included in the checklist for North America north of Mexico (Esslinger 2011). Names are given with authorities and original citation date where possible, followed by a colon. Additional citations are given after the colon, followed by a series of abbreviations for states and regions where known. States and provinces use the standard two-letter abbreviation. Regions include: NAm = North America; WNA = western North America (west of the continental divide); Klam = Klamath Region (my home territory). For those not known from North America, continental distribution may be given: SAm = South America; EUR = Europe; ASIA = Asia; Afr = Africa; Aus = Australia. -
Lichen Communities for Forest Health Monitoring in Colorado
Lichen Communities for Forest Health Monitoring in Colorado, USA A Report to the USDA Forest Service by Bruce McCune1, Paul Rogers2, Andrea Ruchty1, and Bruce Ryan3 29 June 1998 1Department of Botany and Plant Pathology, Cordley 2082, Oregon State University, Corvallis, OR 97331-2902. Phone: 541 737 1741, fax: 541 737 3573, email: [email protected] 2USDA Forest Service, Intermountain Research Station, 507 25th St., Ogden, UT 84401 3Department of Botany, Arizona State University, Tempe, AZ 85287-1601 CONTENTS Abstract ............................................................................................................... 1 Introduction........................................................................................................... 2 Lichens in the Forest Health Monitoring Program ................................................ 2 The Lichen Community Indicator ..................................................................... 2 Previous Work on Lichen Communities in Colorado............................................. 4 Methods ............................................................................................................... 4 Field Methods .............................................................................................. 4 Data Sources ............................................................................................... 5 Data Analysis............................................................................................... 6 The Analytical Data Set....................................................................... -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Checklist of Lichenicolous Fungi and Lichenicolous Lichens of Svalbard, Including New Species, New Records and Revisions
Herzogia 26 (2), 2013: 323 –359 323 Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions Mikhail P. Zhurbenko* & Wolfgang von Brackel Abstract: Zhurbenko, M. P. & Brackel, W. v. 2013. Checklist of lichenicolous fungi and lichenicolous lichens of Svalbard, including new species, new records and revisions. – Herzogia 26: 323 –359. Hainesia bryonorae Zhurb. (on Bryonora castanea), Lichenochora caloplacae Zhurb. (on Caloplaca species), Sphaerellothecium epilecanora Zhurb. (on Lecanora epibryon), and Trimmatostroma cetrariae Brackel (on Cetraria is- landica) are described as new to science. Forty four species of lichenicolous fungi (Arthonia apotheciorum, A. aspicili- ae, A. epiphyscia, A. molendoi, A. pannariae, A. peltigerina, Cercidospora ochrolechiae, C. trypetheliza, C. verrucosar- ia, Dacampia engeliana, Dactylospora aeruginosa, D. frigida, Endococcus fusiger, E. sendtneri, Epibryon conductrix, Epilichen glauconigellus, Lichenochora coppinsii, L. weillii, Lichenopeltella peltigericola, L. santessonii, Lichenostigma chlaroterae, L. maureri, Llimoniella vinosa, Merismatium decolorans, M. heterophractum, Muellerella atricola, M. erratica, Pronectria erythrinella, Protothelenella croceae, Skyttella mulleri, Sphaerellothecium parmeliae, Sphaeropezia santessonii, S. thamnoliae, Stigmidium cladoniicola, S. collematis, S. frigidum, S. leucophlebiae, S. mycobilimbiae, S. pseudopeltideae, Taeniolella pertusariicola, Tremella cetrariicola, Xenonectriella lutescens, X. ornamentata, -
Lichens of Tuckernuck Island Voucher List
The Nantucket Biodiversity Initiative A Checklist of the Lichens on Nantucket Island. Town of Nantucket, Nantucket County, MA, USA May 2008 Elizabeth Kneiper. 35 Woodchester Dr., Weston, MA 02493 Email: [email protected] Abstract: Collections made at 14 sites on Nantucket Island during the 2006 and 2007 NBI Weeks have added 53 species in 33 genera to the 2004 lichen list of 89 species in 37 genera. In all 21 genera have been added to the historical list for the island, increasing the number of genera to 61 and the species list to 148 species. Five species, Bacidia helicospora, Pyrrhospora quernea, Physcia pumilior, Cladonia abbreviatula and Usnea cornuta appear to be new records for Massachusetts. Ramalina willeyi is well established on the island as are other Ramalinas thought to be uncommon in the region, such as Usnea mutabilis, Ramalina americana and Ramalina farinacea. Skyttea radiatilis and Mycoglaena sp. (saprophytic fungi related to lichens and lichenicolous fungi) and Naetrocymbe punctiforms, a lichenicolous fungus, are reported for the island. This lichen inventory work is a continuation of the work started during the 2004 NBI Week. Different lichen assemblages develop in different plant communities and on different substrates. The aim of this work was to survey habitats not examined in 2004 to document the lichen diversity in diverse sites and to attempt to document lichen species recorded for Nantucket Island in The Vascular and Non-Vascular Flora of Nantucket, Tuckernuck and Muskeget Islands by Sorries and Dunwiddie in 1996. Scope of the Inventory and Methods The localities of the sites surveyed in 2006-2007 are listed below. -
Opuscula Philolichenum, 6: 1-XXXX
Opuscula Philolichenum, 15: 56-81. 2016. *pdf effectively published online 25July2016 via (http://sweetgum.nybg.org/philolichenum/) Lichens, lichenicolous fungi, and allied fungi of Pipestone National Monument, Minnesota, U.S.A., revisited M.K. ADVAITA, CALEB A. MORSE1,2 AND DOUGLAS LADD3 ABSTRACT. – A total of 154 lichens, four lichenicolous fungi, and one allied fungus were collected by the authors from 2004 to 2015 from Pipestone National Monument (PNM), in Pipestone County, on the Prairie Coteau of southwestern Minnesota. Twelve additional species collected by previous researchers, but not found by the authors, bring the total number of taxa known for PNM to 171. This represents a substantial increase over previous reports for PNM, likely due to increased intensity of field work, and also to the marked expansion of corticolous and anthropogenic substrates since the site was first surveyed in 1899. Reexamination of 116 vouchers deposited in MIN and the PNM herbarium led to the exclusion of 48 species previously reported from the site. Crustose lichens are the most common growth form, comprising 65% of the lichen diversity. Sioux Quartzite provided substrate for 43% of the lichen taxa collected. Saxicolous lichen communities were characterized by sampling four transects on cliff faces and low outcrops. An annotated checklist of the lichens of the site is provided, as well as a list of excluded taxa. We report 24 species (including 22 lichens and two lichenicolous fungi) new for Minnesota: Acarospora boulderensis, A. contigua, A. erythrophora, A. strigata, Agonimia opuntiella, Arthonia clemens, A. muscigena, Aspicilia americana, Bacidina delicata, Buellia tyrolensis, Caloplaca flavocitrina, C. lobulata, C. -
A Checklist of Lichens Collected During the First Howard Crum Bryological Workshop, Delaware Water Gap National Recreation Area
Opuscula Philolichenum, 2: 1-10. 2005. Contributions to the Lichen Flora of Pennsylvania: A Checklist of Lichens Collected During the First Howard Crum Bryological Workshop, Delaware Water Gap National Recreation Area RICHARD C. HARRIS1 & JAMES C. LENDEMER2 ABSTRACT. – A checklist of 209 species of lichens and lichenicolous fungi collected during the First Howard Crum Bryological Workshop in the Delaware Water Gap National Recreation Area, Pennsylvania, USA is provided. The new species Opegrapha bicolor R.C. Harris & Lendemer, collected during the Foray, is described. Chrysothrix flavovirens Tønsberg and Merismatium peregrinum (Flotow) Triebel are reported as new to North America. On April 23-26, 2004, we were graciously allowed to be commensals during the First Howard Crum Bryological Workshop in the Delaware Water Gap National Recreation Area, Pennsylvania, USA. Given the dearth of knowledge of lichen distributions in Pennsylvania and the overall lack of recent vouchers, this was a valuable opportunity to collect in what turned out to be a rich and interesting area. We were quite surprised by the apparent high lichen diversity, as well as the number of novelties and rarities, in an area so close to the East Coast megalopolis. In four half-days in the field, we collected 209 species in a limited area of the Pennsylvania part of the Park. Some are clearly new to science of which, Opegrapha bicolor is described here (see Endnote). Two presumably undescribed species of Fellhanera will be published elsewhere, and the Halecania will be included in a forthcoming treatment of Ozark lichens. Others are left for the future, as present material (and our knowledge) are inadequate. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
A New Checklist of Lichenised, Lichenicolous and Allied Fungi Reported from South Africa
Page 1 of 4 Original Research A new checklist of lichenised, lichenicolous and allied fungi reported from South Africa Author: Background: The last comprehensive list of lichenised, lichenicolous and allied fungi reported 1 Alan M. Fryday from South Africa was published in 1950. A checklist is important to provide basic information Affiliation: on the extent of the diversity, and to provide the most recent name and classification. 1Department of Plant Biology, Michigan State University, Objective: To present a list of all the lichenised, lichenicolous and allied fungi reported from United States South Africa. Correspondence to: Methods: The list presented is entirely literature based and no attempt has been made to Alan Fryday check the report of any taxa or their status by checking the specimens upon which they are based. Firstly, all taxa that were not reported from within the modern boundaries of South Email: Africa were excluded. Next, the Recent literature on lichens database was searched for literature [email protected] on South African lichens since 1945 and all references checked for new species or new reports, Postal address: which were then added to the list. These names were then checked against Index Fungorum Department of Plant Biology, to ensure that the most current name was being used. Finally, the list was rationalised by Plant Biology Laboratories, 612 Wilson Road, East excluding all synonyms and dubious infraspecific taxa. Lansing, MI, 48824, Results: The current list includes 1750 taxa in 260 genera from mainland South Africa, with United States an additional 100 species and 23 genera from the sub-Antarctic Prince Edward Islands, which Dates: are treated separately. -
The Lichen Flora of Gunib Plateau, Inner-Mountain Dagestan (North-East Caucasus, Russia)
Turkish Journal of Botany Turk J Bot (2013) 37: 753-768 http://journals.tubitak.gov.tr/botany/ © TÜBİTAK Research Article doi:10.3906/bot-1205-4 The lichen flora of Gunib plateau, inner-mountain Dagestan (North-East Caucasus, Russia) 1, 2 Gennadii URBANAVICHUS * , Aziz ISMAILOV 1 Institute of North Industrial Ecology Problems, Kola Science Centre, Russian Academy of Sciences, Apatity, Murmansk Region, Russia 2 Mountain Botanical Garden, Dagestan Scientific Centre, Russian Academy of Sciences, Makhachkala, Republic of Dagestan, Russia Received: 02.05.2012 Accepted: 15.03.2013 Published Online: 02.07.2013 Printed: 02.08.2013 Abstract: As a result of lichenological exploration of the Gunib plateau in the Republic of Dagestan (North-East Caucasus, Russia), we report 402 species of lichenised, 37 lichenicolous, and 7 nonlichenised fungi representing 151 genera. Nineteen species are recorded for the first time for Russia: Abrothallus chrysanthus J.Steiner, Abrothallus microspermus Tul., Caloplaca albopruinosa (Arnold) H.Olivier, Candelariella plumbea Poelt & Vězda, Candelariella rhodax Poelt & Vězda, Cladonia firma (Nyl.) Nyl., Halospora deminuta (Arnold) Tomas. & Cif., Halospora discrepans (J.Lahm ex Arnold) Hafellner, Lichenostigma epipolina Nav.-Ros., Calat. & Hafellner, Milospium graphideorum (Nyl.) D.Hawksw., Mycomicrothelia atlantica D.Hawksw. & Coppins, Parabagliettoa cyanea (A.Massal.) Gueidan & Cl.Roux, Placynthium garovaglioi (A.Massal.) Malme, Polyblastia dermatodes A.Massal., Rusavskia digitata (S.Y.Kondr.) S.Y.Kondr. & Kärnefelt, Squamarina stella-petraea Poelt, Staurothele elenkinii Oxner, Toninia nordlandica Th.Fr., and Verrucaria endocarpoides Servít. In addition, 71 taxa are new records for the Caucasus and 15 are new to Asia. Key words: Lichens, lichenicolous fungi, biodiversity, Gunib plateau, limestone, Dagestan, Caucasus, Russia 1. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology