Changes in the Composition and Diversity of Microbial Communities During Anaerobic Nitrate Reduction and Fe(II) Oxidation at Circumneutral Ph in Paddy Soil
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Community and Whole Genome Analysis of Wastewater Bacteria
Community and Whole Genome Analysis of Wastewater Bacteria By Daniel Rice BSc(Hons) A thesis submitted in total fulfilment of the requirements for the degree of Master of Science School of Life Sciences College of Science, Health and Engineering La Trobe University Victoria Australia February 2020 1 TABLE OF CONTENTS TABLE OF CONTENTS ................................................................................................................ i LIST OF FIGURES ..................................................................................................................... iii LIST OF TABLES ....................................................................................................................... iv LIST OF ABBREVIATIONS .......................................................................................................... v STATEMENT OF AUTHORSHIP ................................................................................................vii ACKNOWLEDGEMENTS ......................................................................................................... viii SUMMARY ..............................................................................................................................ix SECTION 1: INTRODUCTION 1.1 Activated sludge process ................................................................................................... 2 1.2 Community profiling of activated sludge bacterial communities ....................................... 7 1.2.1 Phosphorous removal .......................................................................................... -
Bioflocculation of Wastewater Organic Matter at Short Retention Times
Bioflocculation of Wastewater Organic Matter at Short Retention Times Lena Faust Thesis committee Promotor Prof. dr. ir. H.H.M. Rijnaarts Professor, Chair Environmental Technology Wageningen University Co-promotor Dr. ir. H. Temmink Assistant professor, Sub-department of Environmental Technology Wageningen University Other members Prof. Dr A.J.M. Stams, Wageningen University Prof. Dr. I. Smets, University of Leuven, Belgium Prof. Dr. B.-M. Wilen, Chalmers University of Technology, Sweden Prof. Dr. D.C. Nijmeijer, University of Twente, The Netherlands This research was conducted under the auspices of the Graduate School SENSE (Socio- Economic and Natural Sciences of the Environment) Bioflocculation of Wastewater Organic Matter at Short Retention Times Lena Faust Thesis submitted in fulfillment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Wednesday 3rd of December 2014 at 1.30 p.m. in the Aula. Lena Faust Bioflocculation of Wastewater Organic Matter at Short Retention Times, 163 pages. PhD thesis, Wageningen University, Wageningen, NL (2014) With references, with summaries in English and Dutch ISBN 978-94-6257-171-6 ˮDa steh ich nun, ich armer Tor, und bin so klug als wie zuvor.ˮ Dr. Faust (in Faust I written by Johann Wolgang von Goethe) Contents 1 GENERAL INTRODUCTION ....................................................................................................................1 -
Rajiv Kumar M.Phil
PHYLOGENETIC ANALYSIS OF BACTERIAL DIVERSITY OF HEAVY METAL AFFECTED SOIL OF BATHINDA REGION (SOUTH WEST PUNJAB) A Dissertation submitted to the Central University of Punjab For the award of Master of Philosophy In Biosciences BY Rajiv Kumar Supervisor Dr. Sanjeev K. Thakur Centre for Biosciences School of Basic and Applied Sciences Central University of Punjab, Bathinda August, 2012 1 CERTIFICATE I declare that the dissertation entitled “PHYLOGENETIC ANALYSIS OF BACTERIAL DIVERSITY OF HEAVY METAL AFFECTED SOIL OF BATHINDA REGION (SOUTH WEST PUNJAB)” has been prepared by me under the guidance of Dr. Sanjeev K. Thakur, Assistant Professor, Centre for Biosciences, School of Basic and Applied Sciences, Central University of Punjab. No part of this dissertation has formed the basis for the award of any degree or fellowship previously. Rajiv Kumar Reg. No.:- CUP/M.Phil.-Ph.D/SBAS/BIO/2010-11/05 Centre for Biosciences, School of Basic and Applied Sciences, Central University of Punjab, Bathinda - 151001 DATE: i CERTIFICATE I certify that Rajiv Kumar has prepared his dissertation entitled “PHYLOGENETIC ANALYSIS OF BACTERIAL DIVERSITY OF HEAVY METAL AFFECTED SOIL OF BATHINDA REGION (SOUTH WEST PUNJAB)”, for the award of M.Phil. degree of the Central University of Punjab, under my guidance. He has carried out this work at the Centre for Biosciences, School of Basic and Applied Sciences, Central University of Punjab. Dr. Sanjeev K. Thakur Assistant Professor Centre for Biosciences, School of Basic and Applied Sciences, Central University of Punjab, Bathinda - 151001 DATE: ii ABSTRACT Phylogenetic Analysis of Bacterial Diversity of Heavy Metal Affected Soil of Bathinda Region (South West Punjab) Name of student: Rajiv Kumar Registration Number: CUP/M.Phil.-Ph.D./SBAS/BIO/2010-11/05 Degree for which submitted: Master of Philosophy Name of supervisor: Dr. -
55Th Annual W.W.O.A. Conference October 5-8, 2021 La Crosse Convention Center, La Crosse Inside This Issue… 2021- 2022 W.W.O.A
VOL. 241, JUNE 2021 WISCONSIN WASTEWATER OPERATORS’ ASSOCIATION, INC. Aerial view of Jefferson Wastewater Treatment Plant, Jefferson, Wisconsin 55th Annual W.W.O.A. Conference October 5-8, 2021 La Crosse Convention Center, La Crosse Inside This Issue… 2021- 2022 W.W.O.A. OFFICIAL DIRECTORY • Presidents message / Page 3 Don Lintner Jenny Pagel President Director (2021) N2511 State Rd 57 Wastewater Foreman • Tribute to Tim Nennig / Page 4 New Holstein, WI 53061 City of Clintonville Cell: 920-418-3869 N9055 Cty Road M [email protected] Shiocton WI 54170 • City of Jefferson Wastewater / Page 6 Work: 715-823-7675 Rick Mealy Cell: 920-606-4634 President Elect [email protected] Independent Contractor Lab • Board meeting minutes & Regulatory Assistance April 2 and 3, 2020 / Page 17 319 Linden Lane Marc Stephanie Delavan WI 53115 Director (2020) Cell: 608-220-9457 Director of Public Works • Collection System seminars / Page 24 [email protected] Village of Valders 1522 Puritan Rd New Holstein WI 53061 Jeremy Cramer Work: 920-629-4970 • Board meeting minutes Vice President Wastewater Treatment Cell: 920-251-8100 March 19, 2020 / Page 25 Director [email protected] City of Sun Prairie Joshua Voigt 300 E Main Street • Reminder: Director (2022) Sun Prairie WI 53590 Direct Sales Representative Awards nominations / Page 26 Work: 608-825-0731 Flygt a Xylem Brand Cell: 608-235-9280 3894 Lake Drive jcramer@ Hartford WI 53027 • Troubleshooting Corner: cityofsunprairie.com Work: 262-506-2343 Zoogloea and Thauera / Page 27 Cell: 414-719-5567 [email protected] Jeff Smudde • Index of advertisers / Page 30 Past President Nate Tillis Director of Environmental Director (2022) Programs Maintenance Supervisor NEW Water (GBMSD) City of Waukesha 2231 N Quincy St. -
DGGE) and PGR Cloning of 16S Rrna Genes
THE UNIVERSITY OF NEW SOUTH thesis/Dissertation Sheet Surname or Family name:LE Rrst ^ I Other narne/s: Abbreviation for degree as given in the University calendar: MSc | ScliooliBiotechnolo^^^^^^ and Biomolecular ScienoBS Faculty: Science Title:Community analysis and physiological characterisation of bacterial isolates from a nitrifying membrane bioreactor Abstract This thesis focuses on the identification of early colonisers on membrane surfaces used in wastewater treatment, as well as the physiological characterisation of bacterial cultures isolated from different micro- environments of a membrane bioreactor (MBR). The bacterial community composition of early biofilms on membrane surfaces under different hydrodynamic conditions (pressurised and non-pressurised) and of the activated sludge in an MBR were examined by culture-independent, molecular-based methods of PCR-denaturing gradient gel electrophoresis (PCR-DGGE) and PGR cloning of 16S rRNA genes. A bench-scale, nitrifying MBR treating artificial waste was employed. The hollow fibre ultrafiltration membrane was made of polypropylene with an average pore diameter of 0.04 \im. Analysis of DGGE profiles of the sessile communities on membrane surfaces revealed that Tetrasphaera elongata species were important colonisers due to their ability to bind to membrane surfaces irrespective of the hydrodynamic context and exposure time. Interactions between isolates from the bioreactor and membrane surfaces were further investigated by characterising the physiological traits important in biofilm initiation and proliferation on membrane surfaces such as motility, auto-aggregation, co-aggregation, hydrophobicity and quorum sensing. Bacterial strains were isolated from floes and supernatant phases of the activated sludge as well as from pressurised membrane surfaces. Microbacterium sp. were prevalent in all culture collections. -
Changes in the Structure and Function of Microbial Communities in Drinking Water Treatment Bioreactors Upon Addition of Phosphorus
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UNL | Libraries University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Civil Engineering Faculty Publications Civil Engineering 11-2010 Changes in the Structure and Function of Microbial Communities in Drinking Water Treatment Bioreactors upon Addition of Phosphorus Xu Li University of Nebraska-Lincoln, [email protected] Giridhar Upadhyaya University of Michigan, Ann Arbor Wangki Yuen Jess Brown Carollo Engineers, Sarasota, Florida Eberhard Morgenroth Swiss Federal Institute of Aquatic Science and Technology, Duebendorf, Switzerland See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/civilengfacpub Part of the Civil Engineering Commons Li, Xu; Upadhyaya, Giridhar; Yuen, Wangki; Brown, Jess; Morgenroth, Eberhard; and Raskin, Lutgarde, "Changes in the Structure and Function of Microbial Communities in Drinking Water Treatment Bioreactors upon Addition of Phosphorus" (2010). Civil Engineering Faculty Publications. 35. https://digitalcommons.unl.edu/civilengfacpub/35 This Article is brought to you for free and open access by the Civil Engineering at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Civil Engineering Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Xu Li, Giridhar Upadhyaya, Wangki Yuen, Jess Brown, Eberhard Morgenroth, and Lutgarde Raskin This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ civilengfacpub/35 APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Nov. 2010, p. 7473–7481 Vol. 76, No. 22 0099-2240/10/$12.00 doi:10.1128/AEM.01232-10 Copyright © 2010, American Society for Microbiology. All Rights Reserved. -
Bacteria Responsible for Nitrate-Dependent Antimonite Oxidation in Antimony-Contaminated Paddy Soil Revealed by the Combination of DNA-SIP and Metagenomics
Bacteria Responsible for Nitrate-dependent Antimonite Oxidation in Antimony-contaminated Paddy Soil Revealed by the Combination of DNA-SIP and Metagenomics Miaomiao Zhang Guangdong Institute of Eco-Environmental and Soil Sciences Zhe Li Wuhan Institute of Technology Max M. Häggblom Rutgers The State University of New Jersey Lily Young Rutgers The State University of New Jersey Fangbai Li Guangdong Institute of Eco-Environmental and Soil Sciences Zijun He Guangdong Institute of Eco-Environmental and Soil Sciences Guimei Lu Guangdong Institute of Eco-Environmental and Soil Sciences Rui Xu Guangdong Institute of Eco-Environmental and Soil Sciences Xiaoxu Sun Guangdong Institute of Eco-Environmental and Soil Sciences Lang Qiu Guangdong Institute of Eco-Environmental and Soil Sciences Weimin Sun ( [email protected] ) Guangdong Institute of Eco-Environmental and Soil Sciences https://orcid.org/0000-0002-3456-8177 Research Keywords: Nitrate-dependent antimonite oxidation, Nitrate-dependent Sb(III)-oxidizing bacteria, DNA-SIP, amplicon and shotgun metagenomics Posted Date: September 17th, 2020 Page 1/24 DOI: https://doi.org/10.21203/rs.3.rs-78069/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Soil Biology and Biochemistry on May 1st, 2021. See the published version at https://doi.org/10.1016/j.soilbio.2021.108194. Page 2/24 Abstract Background: Antimonite (Sb(III)) oxidation (SbO) can decrease the toxicity of antimony (Sb) and its uptake into plants (e.g., rice), thus serving an ecological role in bioremediation of Sb contamination. In some anoxic environments, Sb(III) can be oxidized coupled with nitrate as the electron acceptor. -
Methylated Amine-Utilising Bacteria and Microbial Nitrogen Cycling in Movile Cave
METHYLATED AMINE-UTILISING BACTERIA AND MICROBIAL NITROGEN CYCLING IN MOVILE CAVE DANIELA WISCHER UNIVERSITY OF EAST ANGLIA PHD 2014 METHYLATED AMINE-UTILISING BACTERIA AND MICROBIAL NITROGEN CYCLING IN MOVILE CAVE A thesis submitted to the School of Environmental Sciences in fulfilment of the requirements for the degree of Doctor of Philosophy by DANIELA WISCHER in SEPTEMBER 2014 University of East Anglia, Norwich, UK This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. i Table of Contents List of Figures ............................................................................................................... vii List of Tables .................................................................................................................. xi Declaration....................................................................................................................xiii Acknowledgements ...................................................................................................... xiv Abbreviations & Definitions ......................................................................................... xv Abstract........ ................................................................................................................ xix Chapter 1. Introduction -
Physiology and Biochemistry of Aromatic Hydrocarbon-Degrading Bacteria That Use Chlorate And/Or Nitrate As Electron Acceptor
Invitation for the public defense of my thesis Physiology and biochemistry of aromatic hydrocarbon-degrading of aromatic and biochemistry Physiology bacteria that use chlorate and/or nitrate as electron acceptor as electron nitrate and/or use chlorate that bacteria Physiology and biochemistry Physiology and biochemistry of aromatic hydrocarbon-degrading of aromatic hydrocarbon- degrading bacteria that bacteria that use chlorate and/or nitrate as electron acceptor use chlorate and/or nitrate as electron acceptor The public defense of my thesis will take place in the Aula of Wageningen University (Generall Faulkesweg 1, Wageningen) on December 18 2013 at 4:00 pm. This defense is followed by a reception in Café Carré (Vijzelstraat 2, Wageningen). Margreet J. Oosterkamp J. Margreet Paranimphs Ton van Gelder ([email protected]) Aura Widjaja Margreet J. Oosterkamp ([email protected]) Marjet Oosterkamp (911 W Springfield Ave Apt 19, Urbana, IL 61801, USA; [email protected]) Omslag met flap_MJOosterkamp.indd 1 25-11-2013 5:58:31 Physiology and biochemistry of aromatic hydrocarbon-degrading bacteria that use chlorate and/or nitrate as electron acceptor Margreet J. Oosterkamp Thesis-MJOosterkamp.indd 1 25-11-2013 6:42:09 Thesis committee Thesis supervisor Prof. dr. ir. A. J. M. Stams Personal Chair at the Laboratory of Microbiology Wageningen University Thesis co-supervisors Dr. C. M. Plugge Assistant Professor at the Laboratory of Microbiology Wageningen University Dr. P. J. Schaap Assistant Professor at the Laboratory of Systems and Synthetic Biology Wageningen University Other members Prof. dr. L. Dijkhuizen, University of Groningen Prof. dr. H. J. Laanbroek, University of Utrecht Prof. -
Metabolic Capacities of Anammox Bacterium: Kuenenia Stuttgartiensis
Metabolic capacities of anammox bacterium: Kuenenia stuttgartiensis Mariana Itzel Velasco Alvarez December 2014 Master’s dissertation submitted in partial fulfilment of the requirements for the joint degree of International Master of Science in Environmental Technology and Engineering an Erasmus Mundus Master Course jointly organized by UGent (Belgium), ICTP (Prague) and UNESCO‐IHE (the Netherlands) Academic year 2014 – 2015 Metabolic capacities of anammox bacterium: Kuenenia stuttgartiensis Host University: Radboud University, Nijmegen UNESCO-IHE Institute for Water Education Mariana Itzel Velasco Alvarez Promotor: Prof. dr. ir. Mike Jetten Co-promoter: Prof. dr. ir. Piet Lens This thesis was elaborated at Radboud University and defended at UNESCO-IHE Delft within the framework of the European Erasmus Mundus Programme “Erasmus Mundus International Master of Science in Environmental Technology and Engineering " (Course N° 2011-0172) © 2014 Nijmegen, Mariana Velasco, Ghent University, all rights reserved. CONFIDENTIALITY NOTICE – IMPORTANT – PLEASE READ FIRST This document may contain confidential information proprietary to the Radboud University. It is strictly forbidden to publish, cite or make public in any way this document or any part thereof without the express written permission by the Radboud Universit. Under no circumstance this document may be communicated to or put at the disposal of third parties; photocopying or duplicating it in any other way is strictly prohibited. Disregarding the confidential nature of this document may cause irremediable damage to the Radboud University. CONFIDENTIAL DO NOT COPY, DISTRIBUTE OR MAKE PUBLIC IN ANY WAY PLEASE CONTACT RADBOUD UNIVERSITY IF YOU RECEIVED THIS DOCUMENT IN ERROR. Acknowledgments Every success is never achieved alone; is part of a whole, where directly or indirectly is the input of people and situations. -
Environmental Microbiology, Second Edition Edited by Ralph Mitchell and Ji-Dong Gu Copyright © 2010 Wiley-Blackwell
ENVIRONMENTAL MICROBIOLOGY SECOND EDITION Edited by Ralph Mitchell and Ji-Dong Gu A JOHN WILEY & SONS, INC., PUBLICATION ENVIRONMENTAL MICROBIOLOGY ENVIRONMENTAL MICROBIOLOGY SECOND EDITION Edited by Ralph Mitchell and Ji-Dong Gu A JOHN WILEY & SONS, INC., PUBLICATION Copyright © 2010 by Wiley-Blackwell. All rights reserved. Published by John Wiley & Sons, Inc., Hoboken, New Jersey Published simultaneously in Canada. Wiley-Blackwell is an imprint of John Wiley & Sons, formed by the merger of Wiley’s global Scientific, Technical, and Medical business with Blackwell Publishing. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, Inc., 222 Rosewood Drive, Danvers, MA 01923, 978-750-8400, fax 978-750-4470, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, 201-748-6011, fax 201-748-6008, or online at http://www.wiley.com/go/permission. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. -
First Draft Genome Sequence of a Strain Belonging to the Zoogloea Genus and Its Gene Expression in Situ Emilie E
Muller et al. Standards in Genomic Sciences (2017) 12:64 DOI 10.1186/s40793-017-0274-y EXTENDED GENOME REPORT Open Access First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ Emilie E. L. Muller1,3†, Shaman Narayanasamy1†, Myriam Zeimes1, Cédric C. Laczny1,4, Laura A. Lebrun1, Malte Herold1, Nathan D. Hicks2, John D. Gillece2, James M. Schupp2, Paul Keim2 and Paul Wilmes1* Abstract The Gram-negative beta-proteobacterium Zoogloea sp. LCSB751 (LMG 29444) was newly isolated from foaming activated sludge of a municipal wastewater treatment plant. Here, we describe its draft genome sequence and annotation together with a general physiological and genomic analysis, as the first sequenced representative of the Zoogloea genus. Moreover, Zoogloea sp. gene expression in its environment is described using metatranscriptomic data obtained from the same treatment plant. The presented genomic and transcriptomic information demonstrate a pronounced capacity of this genus to synthesize poly-β-hydroxyalkanoate within wastewater. Keywords: Genome assembly, Genomic features, Lipid metabolism, Metatranscriptomics, Poly-hydroxyalkanoate, Wastewater treatement plant Introduction Zoogloea species and thus, limited information is avail- Zoogloea spp. are chemoorganotrophic bacteria often able with regards to the genomic potential of the genus. found in organically enriched aquatic environments and Here we report the genome of a newly isolated Zoogloea are known to be able to accumulate intracellular gran- sp. strain as a representative of the genus, with a focus ules of poly-β-hydroxyalkanoate [1]. The combination of on its biotechnological potential in particular for the these two characteristics renders this genus particulary production of biodiesel or bioplastics.