Eudoxia Macra Is the Eudoxid Stage of Lensia Cossack (Siphonophora, Cnidaria) Mary M

Total Page:16

File Type:pdf, Size:1020Kb

Eudoxia Macra Is the Eudoxid Stage of Lensia Cossack (Siphonophora, Cnidaria) Mary M This article was downloaded by: [Smithsonian Institution Libraries] On: 17 October 2013, At: 08:20 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Systematics and Biodiversity Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/tsab20 The end of an enigmatic taxon: Eudoxia macra is the eudoxid stage of Lensia cossack (Siphonophora, Cnidaria) Mary M. Grossmann a b , Dhugal J. Lindsay a b & Allen G. Collins c a Yokohama City University , Yokohama , 236-0027 , Japan b Japan Agency for Marine–Earth Science and Technology (JAMSTEC) , Yokosuka , 237-0061 , Japan c National Museum of Natural History , Washington , DC , 20013-7012 , USA Published online: 03 Oct 2013. To cite this article: Mary M. Grossmann , Dhugal J. Lindsay & Allen G. Collins (2013) The end of an enigmatic taxon: Eudoxia macra is the eudoxid stage of Lensia cossack (Siphonophora, Cnidaria), Systematics and Biodiversity, 11:3, 381-387, DOI: 10.1080/14772000.2013.825658 To link to this article: http://dx.doi.org/10.1080/14772000.2013.825658 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Versions of published Taylor & Francis and Routledge Open articles and Taylor & Francis and Routledge Open Select articles posted to institutional or subject repositories or any other third-party website are without warranty from Taylor & Francis of any kind, either expressed or implied, including, but not limited to, warranties of merchantability, fitness for a particular purpose, or non-infringement. Any opinions and views expressed in this article are the opinions and views of the authors, and are not the views of or endorsed by Taylor & Francis. The accuracy of the Content should not be relied upon and should be independently verified with primary sources of information. Taylor & Francis shall not be liable for any losses, actions, claims, proceedings, demands, costs, expenses, damages, and other liabilities whatsoever or howsoever caused arising directly or indirectly in connection with, in relation to or arising out of the use of the Content. This article may be used for research, teaching, and private study purposes. Any substantial or systematic reproduction, redistribution, reselling, loan, sub-licensing, systematic supply, or distribution in any form to anyone is expressly forbidden. Terms & Conditions of access and use can be found at http:// www.tandfonline.com/page/terms-and-conditions Taylor & Francis and Routledge Open articles are normally published under a Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0/. However, authors may opt to publish under a Creative Commons Attribution-Non-Commercial License http://creativecommons.org/licenses/by-nc/3.0/ Taylor & Francis and Routledge Open Select articles are currently published under a license to publish, which is based upon the Creative Commons Attribution-Non-Commercial No-Derivatives License, but allows for text and data mining of work. Authors also have the option of publishing an Open Select article under the Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0/. It is essential that you check the license status of any given Open and Open Select article to confirm conditions of access and use. Downloaded by [Smithsonian Institution Libraries] at 08:20 17 October 2013 Systematics and Biodiversity (2013), 11(3): 381–387 Research Article The end of an enigmatic taxon: Eudoxia macra is the eudoxid stage of Lensia cossack (Siphonophora, Cnidaria) MARY M. GROSSMANN1,2, DHUGAL J. LINDSAY1,2 & ALLEN G. COLLINS3 1Yokohama City University 236-0027, Yokohama, Japan 2Japan Agency for Marine–Earth Science and Technology (JAMSTEC) 237-0061, Yokosuka, Japan 3National Museum of Natural History, 20013-7012, Washington, DC, USA (Received 15 March 2013; revised 25 June 2013; accepted 12 July 2013) The greatest challenge in the study of the cnidarian order Siphonophora lies in the identification of all parts of the fragile colonies usually separated during net sampling. Species are usually established based on the morphology of at least one swimming bell of the polygastric stage, and a single genus, Eudoxia, has housed the description of free sexual eudoxid stages until these can be reliably linked to a polygastric stage. This genus, extensively used until the early 20th century, has progressively been emptied and, at the present day, contains only one form for which the identification of the polygastric stage has remained completely enigmatic: Eudoxia macra Totton, 1954. DNA barcoding techniques using the mitochondrial 16S gene allowed this eudoxid stage to finally be linked with its polygastric stage, Lensia cossack Totton, 1941. http://zoobank.org/urn:lsid:zoobank.org:pub:F253E52B-C14D-4440-9BA5-EB9EAC6B42E0 Key words: DNA barcoding, Eudoxia macra, Lensia cossack, geographic divergence, mitochondrial 16S, Siphonophora Introduction which may well be conspecific with Pyrostephos vanhoef- The greatest challenge in the study of the cnidarian or- feni Moser, 1925 (Grossmann et al., 2013). der Siphonophora lies in the identification of all parts of The genus Eudoxia (and its precursor Ersaea), exten- the fragile colonies usually separated during net sampling. sively used until the early twentieth century, has progres- The identification of different life stages of species under sively been emptied and, at the present day, contains only different names is not uncommon in the history of bino- one completely enigmatic form: Eudoxia macra Totton, mial taxonomy. Within the Cnidaria, the Anthomedusae and 1954. The association of eudoxid and polygastric stages Athecata orders, and the Leptomedusae and Thecata orders is primarily done through morphological and distributional separated the medusoid and polypoid forms, respectively, similarities. Indeed, the phyllocyst of the bract of many of species presently regrouped into the Anthoathecata and eudoxid stages resembles, in shape, the somatocyst of the Downloaded by [Smithsonian Institution Libraries] at 08:20 17 October 2013 Leptothecata. anterior nectophore of the polygastric stage (Totton, 1965; In the order Siphonophora, species are usually estab- Mapstone, 2009); and polygastric stages having nec- lished based on the morphology of at least one swimming tophores with marked ridges tend to have eudoxid stages bell of the polygastric stage, and a single genus, Eudoxia, with ridged bracts (personal observation: e.g. 5-ridged has housed the description of free sexual eudoxid stages Lensia, genera Diphyes, Eudoxoides, Muggiaea, etc.). Al- until these can be reliably linked to a polygastric stage. No though this identification of eudoxid stages has been per- other life stages have been described unless they could be formed successfully many times in the Mediterranean Sea ´ linked to a known polygastric stage (e.g. Russell, 1938; (e.g. Totton, 1932; Gamulin, 1966; Gamulin & Krsiniˇ c, 2000), where the diversity of Siphonophora is relatively D. Carre,´ 1972; C. Carre,´ 1979), except for the small post-larval physonect stage Mica micula Margulis, 1982, low, the extremely high biodiversity of Japanese waters (Fujikura et al., 2012) would not normally lend itself to this type of enterprise. Applying DNA barcoding techniques to the cnidarian or- Correspondence to: Mary M. Grossmann. E-mail: [email protected] der Siphonophora, the position of Eudoxia macra within the ISSN 1477-2000 print / 1478-0933 online C 2013 The Author(s). Published by Taylor & Francis. This is an Open Access article. Non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly attributed, cited, and is not altered, transformed, or built upon in any way, is permitted. The moral rights of the named author(s) have been asserted. http://dx.doi.org/10.1080/14772000.2013.825658 382 M. M. Grossmann et al. family Diphyidae Quoy & Gaimard, 1827 and, more specif- Twenty-two specimens of seven species of the genus ically, amongst the non-ridged Lensia species is discussed, Lensia, and four Eudoxia macra gonophores were col- using both morphological and genetic data from specimens lected using plankton nets and preserved in 99.5% ethanol caught in south-east Asian and Antarctic waters. or frozen at –20◦C onboard after identification to species level (Table 1). Frozen specimens were transferred to 99.5% Material and methods ethanol before DNA extraction. For 15 specimens (access The formalin-seawater preserved material included four numbers KC78253434, 40–53), total DNA was extracted complete Eudoxia macra eudoxids, nine bracts and 14 using the Qiagen (Valencia, California, USA) DNEasy gonophores collected in 330 μm mesh IONESS (Kitamura Blood & Tissue kit, and a 623 bp segment of the mitochon- et al., 2001) tows in March 2006 off south-eastern Japan; drial 16S gene amplified and sequenced using ‘primer 1’ seven gonophores collected with a 1.13 m diameter fry net and ‘primer 2’ from Cunningham & Buss (1993) with the (330 μm mesh) between October and December 2010 off TaKaRa (Otsu, Shiga, Japan) ExTaq and BigDye kits. Se- the north-eastern coast of Japan;
Recommended publications
  • Diversity and Community Structure of Pelagic Cnidarians in the Celebes and Sulu Seas, Southeast Asian Tropical Marginal Seas
    Deep-Sea Research I 100 (2015) 54–63 Contents lists available at ScienceDirect Deep-Sea Research I journal homepage: www.elsevier.com/locate/dsri Diversity and community structure of pelagic cnidarians in the Celebes and Sulu Seas, southeast Asian tropical marginal seas Mary M. Grossmann a,n, Jun Nishikawa b, Dhugal J. Lindsay c a Okinawa Institute of Science and Technology Graduate University (OIST), Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan b Tokai University, 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan c Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Japan article info abstract Article history: The Sulu Sea is a semi-isolated, marginal basin surrounded by high sills that greatly reduce water inflow Received 13 September 2014 at mesopelagic depths. For this reason, the entire water column below 400 m is stable and homogeneous Received in revised form with respect to salinity (ca. 34.00) and temperature (ca. 10 1C). The neighbouring Celebes Sea is more 19 January 2015 open, and highly influenced by Pacific waters at comparable depths. The abundance, diversity, and Accepted 1 February 2015 community structure of pelagic cnidarians was investigated in both seas in February 2000. Cnidarian Available online 19 February 2015 abundance was similar in both sampling locations, but species diversity was lower in the Sulu Sea, Keywords: especially at mesopelagic depths. At the surface, the cnidarian community was similar in both Tropical marginal seas, but, at depth, community structure was dependent first on sampling location Marginal sea and then on depth within each Sea. Cnidarians showed different patterns of dominance at the two Sill sampling locations, with Sulu Sea communities often dominated by species that are rare elsewhere in Pelagic cnidarians fi Community structure the Indo-Paci c.
    [Show full text]
  • The Evolution of Siphonophore Tentilla for Specialized Prey Capture in the Open Ocean
    The evolution of siphonophore tentilla for specialized prey capture in the open ocean Alejandro Damian-Serranoa,1, Steven H. D. Haddockb,c, and Casey W. Dunna aDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520; bResearch Division, Monterey Bay Aquarium Research Institute, Moss Landing, CA 95039; and cEcology and Evolutionary Biology, University of California, Santa Cruz, CA 95064 Edited by Jeremy B. C. Jackson, American Museum of Natural History, New York, NY, and approved December 11, 2020 (received for review April 7, 2020) Predator specialization has often been considered an evolutionary makes them an ideal system to study the relationships between “dead end” due to the constraints associated with the evolution of functional traits and prey specialization. Like a head of coral, a si- morphological and functional optimizations throughout the organ- phonophore is a colony bearing many feeding polyps (Fig. 1). Each ism. However, in some predators, these changes are localized in sep- feeding polyp has a single tentacle, which branches into a series of arate structures dedicated to prey capture. One of the most extreme tentilla. Like other cnidarians, siphonophores capture prey with cases of this modularity can be observed in siphonophores, a clade of nematocysts, harpoon-like stinging capsules borne within special- pelagic colonial cnidarians that use tentilla (tentacle side branches ized cells known as cnidocytes. Unlike the prey-capture apparatus of armed with nematocysts) exclusively for prey capture. Here we study most other cnidarians, siphonophore tentacles carry their cnidocytes how siphonophore specialists and generalists evolve, and what mor- in extremely complex and organized batteries (3), which are located phological changes are associated with these transitions.
    [Show full text]
  • The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
    Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK.
    [Show full text]
  • Quantitative Variability of the Copepod Assemblages in the Northern Adriatic Sea from 1993 to 1997
    Estuarine, Coastal and Shelf Science 74 (2007) 528e538 www.elsevier.com/locate/ecss Quantitative variability of the copepod assemblages in the northern Adriatic Sea from 1993 to 1997 Frano Krsˇinic´ a,*, Dubravka Bojanic´ b, Robert Precali c, Romina Kraus c a Institute of Oceanography and Fisheries Split, Ivana Mesˇtrovic´a 63, 21000 Split, Croatia b Institute for Marine and Coastal Research, University of Dubrovnik, Kneza Damjana Jude 12, 20000 Dubrovnik, Croatia c RuCer Bosˇkovic´ Institute, Center for Marine Research, 52210 Rovinj, Croatia Received 25 January 2007; accepted 23 May 2007 Available online 20 July 2007 Abstract Quantitative variability of the copepod assemblages in the northern Adriatic Sea was investigated at two stations, during 43 cruises, from January 1993 to October 1997. Samples were taken at 0.5, 10, and 20 m, as well as near the bottom, using 5-l Niskin bottles. For inter-annual variation in the density of copepod assemblages data were presented as total number of nauplii and copepodites with adult copepods of the fol- lowing groups: Calanoida, Cyclopoida-oithonids, Cyclopoida-oncaeids and Harpacticoida. Moreover, hydrographic conditions, both fractions of phytoplankton, non-loricate ciliates and tintinnids were taken into consideration. Nauplii are the most numerous fraction at both stations with an average over 74% in the total number of all copepod groups. Their numbers were significantly higher at the western eutrophic station, while at the eastern oligotrophic station, an absolute maximum of 693 ind. lÀ1 was noted. The maximum values of calanoids and oithonids occur gen- erally during summer and these copepods are always more numerous at the western station: 33e50% and 50e63%, respectively.
    [Show full text]
  • Sub-Regional Report On
    EP United Nations Environment UNEP(DEPI)/MED WG 359/Inf.10 Programme October 2010 ENGLISH ORIGINAL: ENGLISH MEDITERRANEAN ACTION PLAN Tenth Meeting of Focal Points for SPAs Marseille, France 17-20 May 2011 Sub-regional report on the “Identification of important ecosystem properties and assessment of ecological status and pressures to the Mediterranean marine and coastal biodiversity in the Adriatic Sea” PNUE CAR/ASP - Tunis, 2011 Note : The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of UNEP concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2011 United Nations Environment Programme 2011 Mediterranean Action Plan Regional Activity Centre for Specially Protected Areas (RAC/SPA) Boulevard du leader Yasser Arafat B.P.337 – 1080 Tunis Cedex E-mail : [email protected] The original version (English) of this document has been prepared for the Regional Activity Centre for Specially Protected Areas by: Bayram ÖZTÜRK , RAC/SPA International consultant With the participation of: Daniel Cebrian. SAP BIO Programme officer (overall co-ordination and review) Atef Limam. RAC/SPA International consultant (overall co-ordination and review) Zamir Dedej, Pellumb Abeshi, Nehat Dragoti (Albania) Branko Vujicak, Tarik Kuposovic (Bosnia ad Herzegovina) Jasminka Radovic, Ivna Vuksic (Croatia) Lovrenc Lipej, Borut Mavric, Robert Turk (Slovenia) CONTENTS INTRODUCTORY NOTE ............................................................................................ 1 METHODOLOGY ....................................................................................................... 2 1. CONTEXT ..................................................... ERREUR ! SIGNET NON DÉFINI.4 2. SCIENTIFIC KNOWLEDGE AND AVAILABLE INFORMATION........................ 6 2.1. REFERENCE DOCUMENTS AND AVAILABLE INFORMATION ...................................... 6 2.2.
    [Show full text]
  • Pelagic Cnidarians in the Boka Kotorska Bay, Montenegro (South Adriatic)
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE ISSN: 0001-5113 ACTA ADRIAT., UDC: 593.74: 574.583 (262.3.04) AADRAY 53(2): 291 - 302, 2012 (497.16 Boka Kotorska) “ 2009/2010” Pelagic cnidarians in the Boka Kotorska Bay, Montenegro (South Adriatic) Branka PESTORIĆ*, Jasmina kRPO-ĆETkOVIĆ2, Barbara GANGAI3 and Davor LUČIĆ3 1Institute of Marine Biology, P.O. Box 69, Dobrota bb, 85330 Kotor, Montenegro 2Faculty of Biology, University of Belgrade, Studentski trg 16, 11000 Belgrade, Serbia 3Institute for Marine and Coastal Research, University of Dubrovnik, Kneza Damjana Jude 12, 20000 Dubrovnik, Croatia *Corresponding author: [email protected] Planktonic cnidarians were investigated at six stations in the Boka Kotorska Bay from March 2009 to June 2010 by vertical hauls of plankton net from bottom to surface. In total, 12 species of hydromedusae and six species of siphonophores were found. With the exception of the instant blooms of Obelia spp. (341 ind. m-3 in December), hydromedusae were generally less frequent and abundant: their average and median values rarely exceed 1 ind. m-3. On the contrary, siphonophores were both frequent and abundant. The most numerous were Muggiaea kochi, Muggiaea atlantica, and Sphaeronectes gracilis. Their total number was highest during the spring-summer period with a maximum of 38 ind. m-3 observed in May 2009 and April 2010. M. atlantica dominated in the more eutrophicated inner area, while M. kochi was more numerous in the outer area, highly influenced by open sea waters. This study confirms a shift of dominant species within the coastal calycophores in the Adriatic Sea observed from 1996: autochthonous M.
    [Show full text]
  • Downloaded from Genbank (Table S1)
    water Article Integrated Taxonomy for Halistemma Species from the Northwest Pacific Ocean Nayeon Park 1 , Andrey A. Prudkovsky 2,* and Wonchoel Lee 1,* 1 Department of Life Science, Hanyang University, Seoul 04763, Korea; [email protected] 2 Faculty of Biology, Lomonosov Moscow State University, 119991 Moscow, Russia * Correspondence: [email protected] (A.A.P.); [email protected] (W.L.) Received: 16 October 2020; Accepted: 20 November 2020; Published: 22 November 2020 Abstract: During a survey of the siphonophore community in the Kuroshio Extension, Northwest Pacific Ocean, a new Halistemma Huxley, 1859 was described using integrated molecular and morphological approaches. The Halistemma isabu sp. nov. nectophore is most closely related morphologically to H. striata Totton, 1965 and H. maculatum Pugh and Baxter, 2014. These species can be differentiated by their nectosac shape, thrust block size, ectodermal cell patches and ridge patterns. The new species’ bracts are divided into two distinct types according to the number of teeth. Type A bracts are more closely related to ventral bracts in H. foliacea (Quoy and Gaimard, 1833) while Type B bracts are more similar to H. rubrum (Vogt, 1852). Each type differs, however, from the proximal end shape, distal process and bracteal canal. Both of the new species’ morphological type and phylogenetic position within the genus Halistemma are supported by phylogenetic analysis of concatenated DNA dataset (mtCOI, 16S rRNA and 18S rRNA). Integrated morphological and molecular approaches to the taxonomy of siphonophores showed a clear delimitation of the new species from the congeners. Halistemma isabu sp. nov. is distributed with the congeners H.
    [Show full text]
  • Hydrozoan Insights in Animal Development and Evolution Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston
    Hydrozoan insights in animal development and evolution Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston To cite this version: Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston. Hydrozoan insights in animal development and evolution. Current Opinion in Genetics and Development, Elsevier, 2016, Devel- opmental mechanisms, patterning and evolution, 39, pp.157-167. 10.1016/j.gde.2016.07.006. hal- 01470553 HAL Id: hal-01470553 https://hal.sorbonne-universite.fr/hal-01470553 Submitted on 17 Feb 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Current Opinion in Genetics and Development 2016, 39:157–167 http://dx.doi.org/10.1016/j.gde.2016.07.006 Hydrozoan insights in animal development and evolution Lucas Leclère, Richard R. Copley, Tsuyoshi Momose and Evelyn Houliston Sorbonne Universités, UPMC Univ Paris 06, CNRS, Laboratoire de Biologie du Développement de Villefranche‐sur‐mer (LBDV), 181 chemin du Lazaret, 06230 Villefranche‐sur‐mer, France. Corresponding author: Leclère, Lucas (leclere@obs‐vlfr.fr). Abstract The fresh water polyp Hydra provides textbook experimental demonstration of positional information gradients and regeneration processes. Developmental biologists are thus familiar with Hydra, but may not appreciate that it is a relatively simple member of the Hydrozoa, a group of mostly marine cnidarians with complex and diverse life cycles, exhibiting extensive phenotypic plasticity and regenerative capabilities.
    [Show full text]
  • Final Report
    Developing Molecular Methods to Identify and Quantify Ballast Water Organisms: A Test Case with Cnidarians SERDP Project # CP-1251 Performing Organization: Brian R. Kreiser Department of Biological Sciences 118 College Drive #5018 University of Southern Mississippi Hattiesburg, MS 39406 601-266-6556 [email protected] Date: 4/15/04 Revision #: ?? Table of Contents Table of Contents i List of Acronyms ii List of Figures iv List of Tables vi Acknowledgements 1 Executive Summary 2 Background 2 Methods 2 Results 3 Conclusions 5 Transition Plan 5 Recommendations 6 Objective 7 Background 8 The Problem and Approach 8 Why cnidarians? 9 Indicators of ballast water exchange 9 Materials and Methods 11 Phase I. Specimens 11 DNA Isolation 11 Marker Identification 11 Taxa identifications 13 Phase II. Detection ability 13 Detection limits 14 Testing mixed samples 14 Phase III. 14 Results and Accomplishments 16 Phase I. Specimens 16 DNA Isolation 16 Marker Identification 16 Taxa identifications 17 i RFLPs of 16S rRNA 17 Phase II. Detection ability 18 Detection limits 19 Testing mixed samples 19 Phase III. DNA extractions 19 PCR results 20 Conclusions 21 Summary, utility and follow-on efforts 21 Economic feasibility 22 Transition plan 23 Recommendations 23 Literature Cited 24 Appendices A - Supporting Data 27 B - List of Technical Publications 50 ii List of Acronyms DGGE - denaturing gradient gel electrophoresis DMSO - dimethyl sulfoxide DNA - deoxyribonucleic acid ITS - internal transcribed spacer mtDNA - mitochondrial DNA PCR - polymerase chain reaction rRNA - ribosomal RNA - ribonucleic acid RFLPs - restriction fragment length polymorphisms SSCP - single strand conformation polymorphisms iii List of Figures Figure 1. Figure 1.
    [Show full text]
  • CNIDARIA Corals, Medusae, Hydroids, Myxozoans
    FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell.
    [Show full text]
  • An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
    NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department.
    [Show full text]
  • Gelatinous Zooplankton Assemblages Associated with Water Masses in The
    MARINE ECOLOGY PROGRESS SERIES Vol. 210: 13–24, 2001 Published January 26 Mar Ecol Prog Ser Gelatinous zooplankton assemblages associated with water masses in the Humboldt Current System, and potential predatory impact by Bassia bassensis (Siphonophora: Calycophorae) F. Pagès1,*, H. E. González2, M. Ramón1, M. Sobarzo3, J.-M. Gili1 1Institut de Ciències del Mar (CSIC), Plaça del Mar s/n, 08039 Barcelona, Catalunya, Spain 2Instituto de Biología Marina, Universidad Austral de Chile, Casilla 567, Valdivia, Chile 3Centro EULA-Chile, Universidad de Concepción, Casilla 160-C, Concepción, Chile ABSTRACT: Large numbers of gelatinous zooplankton were collected off Mejillones Peninsula, Chile (Humboldt Current System) in January 1997 during an oceanographic cruise. The area was charac- terized by the mixing of 3 water masses and the development of coastal upwelling. Siphonophores were the predominant group at most of the stations and the calycophoran Bassia bassensis was over- whelmingly the most abundant species. Five group associations were distinguishable in relation to the water masses identified. Siphonophores were associated with Subtropical Surface Water, the ctenophore Pleurobrachia sp. with Subantarctic Water, the pelagic tunicate Salpa fusiformis with Equatorial Subsurface Water, an assemblage of all gelatinous groups with mixed waters, and a low occurrence of gelatinous groups with upwelled Equatorial Subsurface Water. Molluscs were the group least associated with any water mass. The potential percentage of small copepods removed by B. bassensis ranged between 2.9 and 69.3%. Our results indicate that B. bassensis was the most important secondary predator in the top 50 m of the water column, and could therefore have had a significant trophic impact on the population of small copepods off the Mejillones Peninsula during the sampling period, where small copepods constituted 80.6% of the total mesozooplankton community.
    [Show full text]