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Foraging Modes of Carnivorous Plants Aaron M
Israel Journal of Ecology & Evolution, 2020 http://dx.doi.org/10.1163/22244662-20191066 Foraging modes of carnivorous plants Aaron M. Ellison* Harvard Forest, Harvard University, 324 North Main Street, Petersham, Massachusetts, 01366, USA Abstract Carnivorous plants are pure sit-and-wait predators: they remain rooted to a single location and depend on the abundance and movement of their prey to obtain nutrients required for growth and reproduction. Yet carnivorous plants exhibit phenotypically plastic responses to prey availability that parallel those of non-carnivorous plants to changes in light levels or soil-nutrient concentrations. The latter have been considered to be foraging behaviors, but the former have not. Here, I review aspects of foraging theory that can be profitably applied to carnivorous plants considered as sit-and-wait predators. A discussion of different strategies by which carnivorous plants attract, capture, kill, and digest prey, and subsequently acquire nutrients from them suggests that optimal foraging theory can be applied to carnivorous plants as easily as it has been applied to animals. Carnivorous plants can vary their production, placement, and types of traps; switch between capturing nutrients from leaf-derived traps and roots; temporarily activate traps in response to external cues; or cease trap production altogether. Future research on foraging strategies by carnivorous plants will yield new insights into the physiology and ecology of what Darwin called “the most wonderful plants in the world”. At the same time, inclusion of carnivorous plants into models of animal foraging behavior could lead to the development of a more general and taxonomically inclusive foraging theory. -
The Terrestrial Carnivorous Plant Utricularia Reniformis Sheds Light on Environmental and Life-Form Genome Plasticity
International Journal of Molecular Sciences Article The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity Saura R. Silva 1 , Ana Paula Moraes 2 , Helen A. Penha 1, Maria H. M. Julião 1, Douglas S. Domingues 3, Todd P. Michael 4 , Vitor F. O. Miranda 5,* and Alessandro M. Varani 1,* 1 Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, UNESP—Universidade Estadual Paulista, Jaboticabal 14884-900, Brazil; [email protected] (S.R.S.); [email protected] (H.A.P.); [email protected] (M.H.M.J.) 2 Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, São Bernardo do Campo 09606-070, Brazil; [email protected] 3 Departamento de Botânica, Instituto de Biociências, UNESP—Universidade Estadual Paulista, Rio Claro 13506-900, Brazil; [email protected] 4 J. Craig Venter Institute, La Jolla, CA 92037, USA; [email protected] 5 Departamento de Biologia Aplicada à Agropecuária, Faculdade de Ciências Agrárias e Veterinárias, UNESP—Universidade Estadual Paulista, Jaboticabal 14884-900, Brazil * Correspondence: [email protected] (V.F.O.M.); [email protected] (A.M.V.) Received: 23 October 2019; Accepted: 15 December 2019; Published: 18 December 2019 Abstract: Utricularia belongs to Lentibulariaceae, a widespread family of carnivorous plants that possess ultra-small and highly dynamic nuclear genomes. It has been shown that the Lentibulariaceae genomes have been shaped by transposable elements expansion and loss, and multiple rounds of whole-genome duplications (WGD), making the family a platform for evolutionary and comparative genomics studies. To explore the evolution of Utricularia, we estimated the chromosome number and genome size, as well as sequenced the terrestrial bladderwort Utricularia reniformis (2n = 40, 1C = 317.1-Mpb). -
Evaluating the Adaptive Evolutionary Convergence of Carnivorous Plant Taxa Through Functional Genomics
Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics Gregory L. Wheeler and Bryan C. Carstens Department of Evolution, Ecology, & Organismal Biology, The Ohio State University, Columbus, OH, United States of America ABSTRACT Carnivorous plants are striking examples of evolutionary convergence, displaying complex and often highly similar adaptations despite lack of shared ancestry. Using available carnivorous plant genomes along with non-carnivorous reference taxa, this study examines the convergence of functional overrepresentation of genes previously implicated in plant carnivory. Gene Ontology (GO) coding was used to quantitatively score functional representation in these taxa, in terms of proportion of carnivory- associated functions relative to all functional sequence. Statistical analysis revealed that, in carnivorous plants as a group, only two of the 24 functions tested showed a signal of substantial overrepresentation. However, when the four carnivorous taxa were analyzed individually, 11 functions were found to be significant in at least one taxon. Though carnivorous plants collectively may show overrepresentation in functions from the predicted set, the specific functions that are overrepresented vary substantially from taxon to taxon. While it is possible that some functions serve a similar practical purpose such that one taxon does not need to utilize both to achieve the same result, it appears that there are multiple approaches for the evolution of carnivorous function in plant genomes. Our approach could be applied to tests of functional convergence in other systems provided on the availability of genomes and annotation data for a group. Submitted 27 October 2017 Accepted 13 January 2018 Subjects Bioinformatics, Evolutionary Studies, Genomics, Plant Science Published 31 January 2018 Keywords Carnivorous plants, Gene Ontology, Functional genomics, Convergent evolution Corresponding author Gregory L. -
A Família Rubiaceae Na Reserva Biológica Guaribas, Paraíba, Brasil
Acta bot. bras. 18(2): 305-318. 2004 A família Rubiaceae na Reserva Biológica Guaribas, Paraíba, Brasil. Subfamílias Antirheoideae, Cinchonoideae e Ixoroideae1 Maria do Socorro Pereira2,3,4 e Maria Regina de V. Barbosa2 Recebido em 07/09/2002. Aceito em 12/09/2003 RESUMO – (A família Rubiaceae na Reserva Biológica Guaribas, Paraíba, Brasil. Subfamílias Antirheoideae, Cinchonoideae e Ixoroideae). Este trabalho consiste no levantamento dos representantes das subfamílias Antirheoideae, Cinchonoideae e Ixoroideae na Reserva Biológica Guaribas, Paraíba, Brasil. Foram realizadas coletas intensivas no período de outubro/2000 a outubro/2001, as quais resultaram no reconhecimento de 12 espécies, 10 gêneros e cinco tribos, distribuídos nas três subfamílias. A subfamília melhor representada foi Antirheoideae, com cinco espécies, quatro gêneros e duas tribos. Os gêneros com maior número de espécies foram Guettarda L. (2) e Tocoyena Aubl. (2). Alibertia A. Rich. ex DC., Alseis Schott, Chiococca P. Browne, Chomelia Jacq., Coutarea Aubl., Posoqueria Aubl., Sabicea Aubl. e Salzmannia DC. apresentaram uma única espécie cada. São apresentadas chaves para identificação, descrições, comentários sobre morfologia e distribuição das espécies, e ilustrações dos táxons verificados. Palavras-chave: Rubiaceae, Nordeste do Brasil, Mata Atlântica, taxonomia ABSTRACT – (The family Rubiaceae in the Guaribas Biological Reserve, Paraíba State, Brazil. Subfamilies Antirheoideae, Cinchonoideae and Ixoroideae). This paper is a survey of Rubiaceae subfamilies Antirheoideae, Cinchonoideae and Ixoroideae in the Guaribas Biological Reserve, Paraíba, Brazil. Intensive collections were made from October/2000 to October/2001. Twelve species, 10 genera and five tribes were recognized. The most diverse subfamily was Antirheoideae, with five species, four genera and two tribes. The genera with the most species were Guettarda L. -
Deletion of Cephalotus Follicularis from Appendix II
Prop. 11.6 CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA A. PROPOSAL Deletion of Cephalotus follicularis from Appendix II. B. PROPONENT Commonwealth of Australia (Environment Australia) C. SUPPORTING STATEMENT The monotypic genus Cephalotus is an insectivorous plant endemic to south western Australia. It occurs on wetland margins throughout the southwest corner of Western Australia. This portion of Western Australia has a high rainfall and as a result there are extensive areas of suitable habitat, especially on the south coastal plain. Within its range are large areas of government owned forests, National Parks and other reserves where the species is common and is likely to occur in vast numbers. The species is easily propagated from small segments of rhizomes and, as a result, it is commonly traded and is widely cultivated. Morphological variation in wild populations is not evident. As the species is easily propagated, it is unlikely that cultivated stocks are derived from wild collections. Cephalotus follicularis has been identified by the CITES Plants Committee under the Ten Year Review as a candidate for deletion from Appendix II as there has been no recorded trade in wild taken specimens since the species was listed. The proposal received full endorsement of the 5th meeting of the CITES Plants Committee in Mexico, May 1994. 1. Taxonomy 1.1. Class Magnoliatae 1.2. Order Rosales 1.3. Family Cephalotaceae 1.4. Genus/species Cephalotus follicularis Labillardière 1806 1.5. Common name Western Australian pitcher plant; Albany pitcher plant 2. Biological data 2.1. Distribution The area of distribution ranges over 400 km from NW to SE and corresponds with the meso- mediterranean climate of the extreme south western part of Australia. -
The Miniature Genome of a Carnivorous Plant Genlisea Aurea
Leushkin et al. BMC Genomics 2013, 14:476 http://www.biomedcentral.com/1471-2164/14/476 RESEARCH ARTICLE Open Access The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences Evgeny V Leushkin1,2, Roman A Sutormin1, Elena R Nabieva1, Aleksey A Penin1,2,3, Alexey S Kondrashov1,4 and Maria D Logacheva1,5* Abstract Background: Genlisea aurea (Lentibulariaceae) is a carnivorous plant with unusually small genome size - 63.6 Mb – one of the smallest known among higher plants. Data on the genome sizes and the phylogeny of Genlisea suggest that this is a derived state within the genus. Thus, G. aurea is an excellent model organism for studying evolutionary mechanisms of genome contraction. Results: Here we report sequencing and de novo draft assembly of G. aurea genome. The assembly consists of 10,687 contigs of the total length of 43.4 Mb and includes 17,755 complete and partial protein-coding genes. Its comparison with the genome of Mimulus guttatus, another representative of higher core Lamiales clade, reveals striking differences in gene content and length of non-coding regions. Conclusions: Genome contraction was a complex process, which involved gene loss and reduction of lengths of introns and intergenic regions, but not intron loss. The gene loss is more frequent for the genes that belong to multigenic families indicating that genetic redundancy is an important prerequisite for genome size reduction. Keywords: Genome reduction, Carnivorous plant, Intron, Intergenic region Background evolutionary and functional points of view. In a model In spite of the similarity of basic cellular processes in eu- plant species, Arabidopsis thaliana, number of protein- karyotes, their genome sizes are extraordinarily variable. -
Carnivorous Plant Responses to Resource Availability
Carnivorous plant responses to resource availability: environmental interactions, morphology and biochemistry Christopher R. Hatcher A doctoral thesis submitted in partial fulfilment of requirements for the award of Doctor of Philosophy of Loughborough University November 2019 © by Christopher R. Hatcher (2019) Abstract Understanding how organisms respond to resources available in the environment is a fundamental goal of ecology. Resource availability controls ecological processes at all levels of organisation, from molecular characteristics of individuals to community and biosphere. Climate change and other anthropogenically driven factors are altering environmental resource availability, and likely affects ecology at all levels of organisation. It is critical, therefore, to understand the ecological impact of environmental variation at a range of spatial and temporal scales. Consequently, I bring physiological, ecological, biochemical and evolutionary research together to determine how plants respond to resource availability. In this thesis I have measured the effects of resource availability on phenotypic plasticity, intraspecific trait variation and metabolic responses of carnivorous sundew plants. Carnivorous plants are interesting model systems for a range of evolutionary and ecological questions because of their specific adaptations to attaining nutrients. They can, therefore, provide interesting perspectives on existing questions, in this case trait-environment interactions, plant strategies and plant responses to predicted future environmental scenarios. In a manipulative experiment, I measured the phenotypic plasticity of naturally shaded Drosera rotundifolia in response to disturbance mediated changes in light availability over successive growing seasons. Following selective disturbance, D. rotundifolia became more carnivorous by increasing the number of trichomes and trichome density. These plants derived more N from prey and flowered earlier. -
Giant Cephalotus of Unknown Origins
Giant Cephalotus of unknown origins Dick Chan • P.O. Box 2252 • Pasadena • California 91102 • USA • [email protected] Introduction I have been growing Cephalotus follicularis for over 20 years. Initially, I was obsessed with grow- ing specimen-type Cephalotus of different clones and to prove once-and-for-all that this was not a difficult plant to grow. Countless plants have met their demise as I experimented with various meth- ods of cultivation. For those that have survived and flourished, I noticed one plant in particular that grew larger, more vigorous, and had a different pitcher/leaf morphology than Cephalotus ‘Hummer’s Giant’ and the typical Cephalotus. However, I do not believe this plant to be just a better-grown speci- men of ‘Hummer’s Giant’. Through the years, I have given and sold this plant to individuals calling it the “Bubble Giant”, however, I have not received nor heard any feedback as to the well-being of those plants. So, for those reading this article and have received this plant from me, I would appreciate seeing some photos. For the remainder of this article, this plant will be referred to as the “unknown”. Origins During my initial spark-of-entry into the hobby, I started collecting Cephalotus cuttings, plants, stems, and leaves from anyone who had the plant and was willing to give or sell a piece to me. Be- cause of that activity, this plant is of an unknown origin because of the feverish pace by which I went about amassing what I had hoped would become a genetically diverse collection of plants. -
Discovery of Digestive Enzymes in Carnivorous Plants with Focus on Proteases
A peer-reviewed version of this preprint was published in PeerJ on 5 June 2018. View the peer-reviewed version (peerj.com/articles/4914), which is the preferred citable publication unless you specifically need to cite this preprint. Ravee R, Mohd Salleh F‘, Goh H. 2018. Discovery of digestive enzymes in carnivorous plants with focus on proteases. PeerJ 6:e4914 https://doi.org/10.7717/peerj.4914 Discovery of digestive enzymes in carnivorous plants with focus on proteases Rishiesvari Ravee 1 , Faris ‘Imadi Mohd Salleh 1 , Hoe-Han Goh Corresp. 1 1 Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia Corresponding Author: Hoe-Han Goh Email address: [email protected] Background. Carnivorous plants have been fascinating researchers with their unique characters and bioinspired applications. These include medicinal trait of some carnivorous plants with potentials for pharmaceutical industry. Methods. This review will cover recent progress based on current studies on digestive enzymes secreted by different genera of carnivorous plants: Drosera (sundews), Dionaea (Venus flytrap), Nepenthes (tropical pitcher plants), Sarracenia (North American pitcher plants), Cephalotus (Australian pitcher plants), Genlisea (corkscrew plants), and Utricularia (bladderworts). Results. Since the discovery of secreted protease nepenthesin in Nepenthes pitcher, digestive enzymes from carnivorous plants have been the focus of many studies. Recent genomics approaches have accelerated digestive enzyme discovery. Furthermore, the advancement in recombinant technology and protein purification helped in the identification and characterisation of enzymes in carnivorous plants. Discussion. These different aspects will be described and discussed in this review with focus on the role of secreted plant proteases and their potential industrial applications. -
Universidade Estadual Paulista Câmpus De
Campus de Botucatu UNESP - UNIVERSIDADE ESTADUAL PAULISTA CÂMPUS DE BOTUCATU INSTITUTO DE BIOCIÊN CIAS GENÔMICA ORGANELAR E EVOLUÇÃO DE GENLISEA E UTRICULARIA (LENTIBULARIACEAE) SAURA RODRIGUES DA SILVA Tese apresentada ao Instituto de Biociências, Câmpus de Botucatu, UNESP, para obtenção do título de Doutor em Ciências Biológicas (Botânica) BOTUCATU - SP - 2018 - Insti tuto de Biociências – Departamento de Botânica Distrito de Rubião Júnior s/n CEP 18618 - 000 Botucatu SP Brasil Tel 14 3811 6265/6053 fax 14 3815 3744 [email protected] Campus de Botucatu UNESP - UNIVERSIDADE ESTADUAL PAULISTA CÂMPUS DE BOTUCATU INSTITUTO DE BIOCIÊN CIAS GENÔMICA ORGANELAR E EVOLUÇÃO DE GENLISEA E UTRICULARIA (LENTIBULARIACEAE) SAUR A RODRIGUES DA SILVA PROF. DR. VITOR FERN ANDES OLIVEIRA DE MI RANDA ORIENTADOR PROF. DR. ALESSANDRO DE MEL L O VARANI Coorientador Tese apresentada ao Instituto de Biociências, Câmpus de Botucatu, UNESP, para obtenção do título de Doutor em Ciên cias Biológicas (Botânica) BOTUCATU - SP - 2018 - Instituto de Biociências – Departamento de Botânica Distrito de Rubião Júnior s/n CEP 18618 - 000 Botucatu SP Brasil Tel 14 3811 6265/6053 fax 14 3815 3744 [email protected] 2 Campus de Botucatu FICHA CATALOGRÁFIC A ELABORADA PELA SEÇÃO TÉCNICA DE AQUISIÇÃO E TRATAMENTO DA INFORMAÇÃO DIVISÃO TÉCNICA DE BIBLIOTECA E DOCUMENTAÇÃO - CAMPUS DE BOTUCATU - UNESP Silva, Saura Rodrigues. Genômica organelar e evolução d e Genlisea e Utricularia (Lentibulariaceae) / Saura Rodrigues da Silva. – 2018. Tese (doutorado) – Universidade Estadual Paulista, Instituto de Biociências de Botucatu, 2018. Orientador: Vitor Fernandes Oliveira de Miranda Co - orientador: Alessandro de Mello Varani Assunto CAPES: 1. Sistemática Vegetal CDD 581.1 Palavras - c have: Utricularia ; Genlisea ; genômica de organelas; ndhs; Evolução de organelas. -
Towards Resolving Lamiales Relationships
Schäferhoff et al. BMC Evolutionary Biology 2010, 10:352 http://www.biomedcentral.com/1471-2148/10/352 RESEARCH ARTICLE Open Access Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences Bastian Schäferhoff1*, Andreas Fleischmann2, Eberhard Fischer3, Dirk C Albach4, Thomas Borsch5, Günther Heubl2, Kai F Müller1 Abstract Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and desiccation tolerance occur, and some lineages possess drastically accelerated DNA substitutional rates or miniaturized genomes. However, understanding the evolution of these phenomena in the order, and clarifying borders of and relationships among lamialean families, has been hindered by largely unresolved trees in the past. Results: Our analysis of the rapidly evolving trnK/matK, trnL-F and rps16 chloroplast regions enabled us to infer more precise phylogenetic hypotheses for the Lamiales. Relationships among the nine first-branching families in the Lamiales tree are now resolved with very strong support. Subsequent to Plocospermataceae, a clade consisting of Carlemanniaceae plus Oleaceae branches, followed by Tetrachondraceae and a newly inferred clade composed of Gesneriaceae plus Calceolariaceae, which is also supported by morphological characters. Plantaginaceae (incl. Gratioleae) and Scrophulariaceae are well separated in the backbone grade; Lamiaceae and Verbenaceae appear in distant clades, while the recently described Linderniaceae are confirmed to be monophyletic and in an isolated position. Conclusions: Confidence about deep nodes of the Lamiales tree is an important step towards understanding the evolutionary diversification of a major clade of flowering plants. The degree of resolution obtained here now provides a first opportunity to discuss the evolution of morphological and biochemical traits in Lamiales. -
Repeat Sequence Turnover Shifts Fundamentally in Species with Large Genomes
Novak et al. Repeat sequence turnover shifts fundamentally in species with large genomes Repeat sequence turnover shifts fundamentally in species with large genomes Petr Novák1, Maïté S. Guignard2,3, Pavel Neumann1, Laura J. Kelly2,3, Jelena Mlinarec4, Andrea Koblížková1, Steven Dodsworth3,5, Aleš Kovařík6, Jaume Pellicer2, Wencai Wang3,8, Jiří Macas1*, Ilia J. Leitch2*, Andrew R. Leitch3* 1 Biology Centre, Czech Academy of Sciences, České Budějovice, CZ-37005, Czech Republic 2 Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK 3 School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, UK 4 Division of Molecular Biology, Department of Biology, University of Zagreb, Croatia 5 School of Life Sciences, University of Bedfordshire, Luton LU1 3JU, UK 6 Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic 7 Institut Botànic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), Passeig del Migdia sn, 08038 Barcelona, Catalonia, Spain 8 Guangzhou University of Chinese Medicine, Guangzhou, 510405, China *Authors for Correspondence: Ilia J Leitch, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK. Telephone: +44 208 332 5329. Email: [email protected] Jiří Macas, Biology Centre, Czech Academy of Sciences, České Budějovice, CZ-37005, Czech Republic. Telephone: + 420 38 777 5516. Email: [email protected] Andrew R Leitch, School of Biological and Chemical Sciences, Queen Mary University of London. London E1 4NS. Telephone: +44 207 882 5294. Email: [email protected] Petr Novák, [email protected] Ilia J. Leitch, [email protected] Jelena Mlinarec, [email protected] Laura Kelly, [email protected] Andrea Koblížková, [email protected] Pavel Neumann, [email protected] Steven Dodsworth, [email protected] Maïté Guignard, [email protected] Wencai Wang, [email protected] Aleš Kovřík, [email protected] Jaume Pellicer, [email protected] Jiří Macas, [email protected] Andrew R.