Transformation of Osmads14 (AP1-Like) Gene Into Erycina Pusilla
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Generic and Subtribal Relationships in Neotropical Cymbidieae (Orchidaceae) Based on Matk/Ycf1 Plastid Data
LANKESTERIANA 13(3): 375—392. 2014. I N V I T E D P A P E R* GENERIC AND SUBTRIBAL RELATIONSHIPS IN NEOTROPICAL CYMBIDIEAE (ORCHIDACEAE) BASED ON MATK/YCF1 PLASTID DATA W. MARK WHITTEN1,2, KURT M. NEUBIG1 & N. H. WILLIAMS1 1Florida Museum of Natural History, University of Florida Gainesville, FL 32611-7800 USA 2Corresponding author: [email protected] ABSTRACT. Relationships among all subtribes of Neotropical Cymbidieae (Orchidaceae) were estimated using combined matK/ycf1 plastid sequence data for 289 taxa. The matrix was analyzed using RAxML. Bootstrap (BS) analyses yield 100% BS support for all subtribes except Stanhopeinae (87%). Generic relationships within subtribes are highly resolved and are generally congruent with those presented in previous studies and as summarized in Genera Orchidacearum. Relationships among subtribes are largely unresolved. The Szlachetko generic classification of Maxillariinae is not supported. A new combination is made for Maxillaria cacaoensis J.T.Atwood in Camaridium. KEY WORDS: Orchidaceae, Cymbidieae, Maxillariinae, matK, ycf1, phylogenetics, Camaridium, Maxillaria cacaoensis, Vargasiella Cymbidieae include many of the showiest align nrITS sequences across the entire tribe was Neotropical epiphytic orchids and an unparalleled unrealistic due to high levels of sequence divergence, diversity in floral rewards and pollination systems. and instead to concentrate our efforts on assembling Many researchers have posed questions such as a larger plastid data set based on two regions (matK “How many times and when has male euglossine and ycf1) that are among the most variable plastid bee pollination evolved?”(Ramírez et al. 2011), or exon regions and can be aligned with minimal “How many times have oil-reward flowers evolved?” ambiguity across broad taxonomic spans. -
ORCHIDACEAE: ONCIDIINAE) and a SOLUTION to a TAXONOMIC CONUNDRUM Lankesteriana International Journal on Orchidology, Vol
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica Dalström, Stig NEW COMBINATIONS IN ODONTOGLOSSUM (ORCHIDACEAE: ONCIDIINAE) AND A SOLUTION TO A TAXONOMIC CONUNDRUM Lankesteriana International Journal on Orchidology, vol. 12, núm. 1, abril, 2012, pp. 53-60 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44339823005 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 12(1): 53—60. 2012. NEW COMBINATIONS IN ODONTOGLOSSUM (ORCHIDACEAE: ONCIDIINAE) AND A SOLUTION TO A TAXONOMIC CONUNDRUM STIG DALSTRÖM 2304 Ringling Boulevard, unit 119, Sarasota FL 34237, U.S.A. Research Associate: Lankester Botanical Garden, University of Costa Rica and Andean Orchids Research Center, University Alfredo Pérez Guerrero, Ecuador National Biodiversity Centre, Serbithang, Thimphu, Bhutan [email protected] ABSTRACT. The diminutively flowered Oncidium koechliniana demonstrates a unique combination of features that justifies a transfer of it and all here accepted species in closely related genera Cochlioda and Solenidiopsis to Odontoglossum, which is executed here. Distinguishing features to separate Odontoglossum from Oncidium are based on geographic distribution, and flower morphology, which is demonstrated with illustrations. RESUMEN. Oncidium koechliniana, de flores diminutas, presenta una combinacíon de características únicas que justifica su transferencia, así como de todas las especies aquí aceptadas de los génerosCochlioda y Solenidiopsis a Odontoglossum, transferencias que se hacen en este artículo. La características distintiva para separar Odontoglossum de Oncidium están basadas en distribución geográfica y morfología floral, que se muestran a través de ilustraciones. -
Redalyc.ONCIDIUM SURPRISES with DEOXYRIBONUCLEIC ACID
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica ZELENKO, HARRY ONCIDIUM SURPRISES WITH DEOXYRIBONUCLEIC ACID Lankesteriana International Journal on Orchidology, vol. 7, núm. 1-2, marzo, 2007, pp. 458-460 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44339813094 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 7(1-2): 458-460. 2007. ONCIDIUM SURPRISES WITH DEOXYRIBONUCLEIC ACID HARRY ZELENKO Asociación de Orquideología de Quito and Greater New York Orchid Society P.O. Box 17-22-20043 Cumbaya, Quito, Ecuador [email protected] There is an armchair taxonomist I know that wrote Another monotype, Oncidium onustum, was studied that the taxonomy of the Oncidium alliance was a mess. by Williams and Chase and with DNA research and I’d been thinking that the remark was based on lack of other observations, they confirmed that because there knowledge. In my opinion, he is way off base. Know were a number of differences with this species, it was that I am not a taxonomist… only a grower and an removed from the body of Oncidium and it is now artist. But I do believe that the Oncidium alliance is a called Zelenkoa onusta. They grow on cacti as well as reasonably well organized taxonomy. trees in southern Ecuador and northern Peru. -
The Complete Plastid Genome Sequence of Iris Gatesii (Section Oncocyclus), a Bearded Species from Southeastern Turkey
Aliso: A Journal of Systematic and Evolutionary Botany Volume 32 | Issue 1 Article 3 2014 The ompletC e Plastid Genome Sequence of Iris gatesii (Section Oncocyclus), a Bearded Species from Southeastern Turkey Carol A. Wilson Rancho Santa Ana Botanic Garden, Claremont, California Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons, Ecology and Evolutionary Biology Commons, and the Genomics Commons Recommended Citation Wilson, Carol A. (2014) "The ompC lete Plastid Genome Sequence of Iris gatesii (Section Oncocyclus), a Bearded Species from Southeastern Turkey," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 32: Iss. 1, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol32/iss1/3 Aliso, 32(1), pp. 47–54 ISSN 0065-6275 (print), 2327-2929 (online) THE COMPLETE PLASTID GENOME SEQUENCE OF IRIS GATESII (SECTION ONCOCYCLUS), A BEARDED SPECIES FROM SOUTHEASTERN TURKEY CAROL A. WILSON Rancho Santa Ana Botanic Garden and Claremont Graduate University, 1500 North College Avenue, Claremont, California 91711 ([email protected]) ABSTRACT Iris gatesii is a rare bearded species in subgenus Iris section Oncocyclus that occurs in steppe communities of southeastern Turkey. This species is not commonly cultivated, but related species in section Iris are economically important horticultural plants. The complete plastid genome is reported for I. gatesii based on data generated using the Illumina HiSeq platform and is compared to genomes of 16 species selected from across the monocotyledons. This Iris genome is the only known plastid genome available for order Asparagales that is not from Orchidaceae. The I. gatesii plastid genome, unlike orchid genomes, has little gene loss and rearrangement and is likely to be similar to other genomes from Asparagales. -
Exploring the Evolutionary Origin of Floral Organs of Erycina Pusilla, an Emerging Orchid Model System
Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Dirks-Mulder, A., R. Butôt, P. van Schaik, J. W. P. M. Wijnands, R. van den Berg, L. Krol, S. Doebar, et al. 2017. “Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system.” BMC Evolutionary Biology 17 (1): 89. doi:10.1186/ s12862-017-0938-7. http://dx.doi.org/10.1186/s12862-017-0938-7. Published Version doi:10.1186/s12862-017-0938-7 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:32072189 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Dirks-Mulder et al. BMC Evolutionary Biology (2017) 17:89 DOI 10.1186/s12862-017-0938-7 RESEARCHARTICLE Open Access Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system Anita Dirks-Mulder1,2, Roland Butôt1, Peter van Schaik2, Jan Willem P. M. Wijnands2, Roel van den Berg2, Louie Krol2, Sadhana Doebar2, Kelly van Kooperen2, Hugo de Boer1,7,8, Elena M. Kramer3, Erik F. Smets1,6, Rutger A. Vos1,4, Alexander Vrijdaghs6 and Barbara Gravendeel1,2,5* Abstract Background: Thousands of flowering plant species attract pollinators without offering rewards, but the evolution of this deceit is poorly understood. -
Common Epiphytes and Lithophytes of BELIZE 1 Bruce K
Common Epiphytes and Lithophytes of BELIZE 1 Bruce K. Holst, Sally Chambers, Elizabeth Gandy & Marilynn Shelley1 David Amaya, Ella Baron, Marvin Paredes, Pascual Garcia & Sayuri Tzul2 1Marie Selby Botanical Gardens, 2 Ian Anderson’s Caves Branch Botanical Garden © Marie Selby Bot. Gard. ([email protected]), Ian Anderson’s Caves Branch Bot. Gard. ([email protected]). Photos by David Amaya (DA), Ella Baron (EB), Sally Chambers (SC), Wade Coller (WC), Pascual Garcia (PG), Elizabeth Gandy (EG), Bruce Holst (BH), Elma Kay (EK), Elizabeth Mallory (EM), Jan Meerman (JM), Marvin Paredes (MP), Dan Perales (DP), Phil Nelson (PN), David Troxell (DT) Support from the Marie Selby Botanical Gardens, Ian Anderson’s Caves Branch Jungle Lodge, and many more listed in the Acknowledgments [fieldguides.fieldmuseum.org] [1179] version 1 11/2019 TABLE OF CONTENTS long the eastern slopes of the Andes and in Brazil’s Atlantic P. 1 ............. Epiphyte Overview Forest biome. In these places where conditions are favorable, epiphytes account for up to half of the total vascular plant P. 2 .............. Epiphyte Adaptive Strategies species. Worldwide, epiphytes account for nearly 10 percent P. 3 ............. Overview of major epiphytic plant families of all vascular plant species. Epiphytism (the ability to grow P. 6 .............. Lesser known epiphytic plant families as an epiphyte) has arisen many times in the plant kingdom P. 7 ............. Common epiphytic plant families and species around the world. (Pteridophytes, p. 7; Araceae, p. 9; Bromeliaceae, p. In Belize, epiphytes are represented by 34 vascular plant 11; Cactaceae, p. 15; p. Gesneriaceae, p. 17; Orchida- families which grow abundantly in many shrublands and for- ceae, p. -
Dimensions of Biodiversity: 2010-2014 Projects (Nsf15030
Dimensions of Biodiversity 2010–2014 NATIONAL SCIENCE FOUNDATION PROJECTS CO-FUNDED BY Introduction 4 Project Abstracts 2014 6 Project Updates 2013 32 Project Updates 2012 46 Project Updates 2011 60 Project Updates 2010 76 a FRONT COVER IMAGES f g h b c i k l j m n o p q r d e IMAGE CREDIT THIS PAGE FRONT COVER a Jon G. Sanders d Karen E. Sears f Anothny R. Ives k Karen E. Sears o Michael N. Dawson b E.M. Rivkina e Jenny Xiang g Piotr Łukasik l Ivan Prates p Jon G. Sanders c Klaus Nüsslein h Walter S. Judd m John Wertz & q Ryan McMinds & i Robert Brucker & Alicia Withrow Jerome Payet Seth Bordenstein n Fabian A. r Richard Lankau j Olle Pellmyr Michelangeli FIELD SITES Argentina France Singapore Australia French Guiana South Africa Bahamas French Polynesia Spain Belize Germany Sweden Bermuda Iceland Switzerland Bolivia Japan Tahiti Brazil Madagascar Taiwan Canada Malaysia Thailand China Mexico Trinidad Colombia Norway United States Costa Rica Palau United Kingdom Czech Republic Panama Venezuela Dominican Peru Labrador Sea Republic Philippines North Atlantic Ecuador Poland Ocean Finland Puerto Rico North Pacific Ocean Russia Saudi Arabia COLLABORATORS Argentina Finland Palau Australia France Panama Brazil Germany Peru Canada Guam Russia INTERNATIONAL PARTNERS Chile India South Africa China Brazil China Indonesia Sri Lanka (NSFC) (FAPESP) Colombia Japan Sweden Costa Rica Kenya United Ecuador Malaysia Kingdom Mexico ACKNOWLEDGMENTS Many NSF staff members, too numerous to We thank Mina Ta, Design Specialist, for her mention individually, assisted in the development important contributions to the abstract booklet. -
The Systematic Distribution of Vascular Epiphytes: an Update
Selbyana 9: 2-22 THE SYSTEMATIC DISTRIBUTION OF VASCULAR EPIPHYTES: AN UPDATE w. JOHN KREss Marie Selby Botanical Gardens, 811 South Palm Avenue, Sarasota, Florida 33577 ABSTRACT. The list of vascular plant families and genera containing epiphytic species published by Madison (1977) is updated here. Ten percent (23,456 species) of all vascular plant species are epiphytes. Seven percent (876) of the genera, 19 percent (84) of the families, 45 percent (44) of the orders and 75 percent (6) of the classes contain epiphytes. Twenty-three families contain over 50 epiphytic species each. The Orchidaceae is the largest family of epiphytes, containing 440 epiphytic genera and 13,951 epiphytic species. Forty-three genera of vascular plants each contain over 100 epiphytic species. In 1977 Madison published a list of the vas those plants that normally spend their entire life cular plant families and genera that contain epi cycle perched on another plant and receive all phytic species. Madison compiled this list from mineral nutrients from non-terrestrial sources. literature reports, consultation with taxonomic Hemi~epiphytes normally spend only part oftheir specialists, and a survey of herbarium material. life cycle perched on another plant and thus some He reported that 65 families contain 850 genera mineral nutrients are received from terrestrial and 28,200 species of epiphytes. His total ac sources. Hemi-epiphytes either begin their life counted for about ten percent of all species of cycle as epiphytes and eventually send roots and vascular plants. shoots to the ground (primary hemi-epiphytes), Madison's list was the most comprehensive or begin as terrestrially established seedlings that compilation of vascular epiphytes since the works secondarily become epiphytic by severing all of Schimper (1888) and Richards (1952) upon connections with the ground (secondary hemi which it was partly based. -
Cytogenetic and Cytometric Analyses in Artificial Intercytotypic Hybrids of the Emergent Orchid Model Species Erycina Pusilla
Euphytica (2015) 206:533–539 DOI 10.1007/s10681-015-1534-9 Cytogenetic and cytometric analyses in artificial intercytotypic hybrids of the emergent orchid model species Erycina pusilla Hsuan-Yu Yeh . Choun-Sea Lin . Song-Bin Chang Received: 19 March 2015 / Accepted: 9 August 2015 / Published online: 3 September 2015 Ó The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Erycina pusilla is considered a potential study also illustrated the genome homology and model organism for orchids, because of several homeologous pairing at pachytene phase, indicating advantageous features, such as short juvenile period, that the chromosome number variation of two cyto- low chromosome number and all year round bloom- types mainly resulted from chromosome rearrange- ing. Two different chromosome numbers (2n = 10 ments, not changes in genomic constitution. and 2n = 12) are reported for E. pusilla, which suggests two cytotypes. To reveal the genome homol- Keywords Chromosome rearrangements Á ogy between these two cytotypes, we generated Cytotype Á Erycina pusilla Á Intercytotypic hybrids hybrids from the intercytotypic reciprocal crosses (2n = 10 9 2n = 12 and 2n = 12 9 2n = 10), and applied 40,6-diamidino-2-phenylindole staining, geno- Introduction mic in situ hybridization and flow cytometry for genomic and cytogenetic analysis. The parental The orchid Erycina pusilla is an epiphytic Oncidiinae genomes showed high similarity both in genomic species, which is widespread in the wild and has been composition and content. The hybrids displayed a recorded from the Caribbean, Mesoamerica and South chromosome number of 2n = 11 in mitotic cells. America. Karyotype analysis in the Orchidaceae Moreover, five bivalents and one univalent were revealed a wide range of chromosome numbers, and observed at meiotic metaphase I stage. -
An Inventory of Vascular Plants Endemic to Italy
Phytotaxa 168 (1): 001–075 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Monograph ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.168.1.1 PHYTOTAXA 168 An inventory of vascular plants endemic to Italy LORENZO PERUZZI1*, FABIO CONTI2 & FABRIZIO BARTOLUCCI2 1Dipartimento di Biologia, Unità di Botanica, Università di Pisa, Via Luca Ghini 13, 56126, Pisa, Italy; e-mail [email protected] 2Scuola di Scienze Ambientali, Università di Camerino – Centro Ricerche Floristiche dell’Appennino, Parco Nazionale del Gran Sasso e Monti della Laga, San Colombo, 67021 Barisciano (L'Aquila); e-mail [email protected]; [email protected] *author for correspondence Magnolia Press Auckland, New Zealand Accepted by Alex Monro: 12 Apr. 2014; published: 16 May 2014 1 Peruzzi et al. An inventory of vascular plants endemic to Italy (Phytotaxa 168) 75 pp.; 30 cm. 16 May 2014 ISBN 978-1-77557-378-4 (paperback) ISBN 978-1-77557-379-1 (Online edition) FIRST PUBLISHED IN 2014 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/phytotaxa/ © 2014 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. -
In Vitro Development of the Mexican Endemic Twig Epiphyte Erycina
Research article In vitro development of the Mexican endemic twig epiphyte Erycina hyalinobulbon (Orchidaceae) to promote its conservation Desarrollo in vitro de la orquídea epífita Erycina hyalinobulbon (Orchidaceae), endémica de México, para promover su conservación José Tonatiuh Gutiérrez-Zavala1 , Irene Ávila-Díaz1,2 , Rosa Elia Magaña-Lemus1 Abstract: Background and Aims: Orchids in Mexico are mainly threatened by deforestation, changes in land use, illegal trade, deficiencies in environmental policy and legislation, and a lack of community participation in the conservation of their forests.Erycina hyalinobulbon is an endemic twig epiphyte orchid with a short life cycle and with large flowers in relation to its size, for which it has been harvested from its wild populations. The objectives of this work were to evaluate the in vitro development of E. hyalinobulbon in culture media with organic supplements, to compare sucrose vs. N’Joy Stevia® as a carbon source for its initial stages of development, and to evaluate the development of its seedlings in media enriched with plant growth regulators (PGR). Methods: For the sowing of seeds, PhytamaxTM and MS medium at 30% of its basal salts were used in combination with organic supplement (coconut milk, pineapple puree and banana puree), along with the Phy medium used as control. In order to measure the effect of sucrose vs. N´Joy Stevia® as a carbon source, these two treatments were used, with the PhytamaxTM medium. To evaluate the development of seedlings with PGR, three treatments were tested: the 100% PhytamaxTM control, 30% PhytamaxTM with 1.166 ml/l of Maxi-grow and the medium Chiu. -
Orchid Research Newsletter No. 66
Orchid Research Newsletter No. 66 When the Molecular Systematics Laboratory at the Royal Botanic Gardens, Kew, first opened under the leadership of Mark Chase and Mike Bennett as Keeper of the Jodrell, the main target marker was rbcL for family-wide systematic studies of Orchidaceae and other families. Internal transcribed spacers of nuclear ribosomal DNA were used for studies below the family level. Those of us unfortunate to have lived through those days of manual sequencing in the early 1990s know how laborious it was to label nucleotides with radioactive phosphorus 32 or sulfur 35 with all the safety measures that that entailed, pour polyacrylamide gels between two glass plates without even the smallest air bubble, expose the sequencing gel to x-ray film, and then manually call the bases one by one off the autoradiogram, hoping to get 100 bases of the more than 1300 base pairs in the rbcL sequence and then enter them into the computer database. In many cases, the results were ambiguous, which entailed judgment calls. And this did not even include data analysis with software much, much slower than today. All this work produced only a trickle of data and a lack of strong support for many branches leading to the major clades. Manna from heaven came in the form of automated sequencing later that decade. Automated sequencers used the Sanger method, which relied on the introduction of dideoxynucleotides into the growing DNA strand by DNA polymerase, creating fragments separated by size on the gel by electrophoresis. Nucleotides were labeled by fluorescent dyes rather than sulfur 35, and read by a laser.