My Idea Would Be to Give a General Intro to D'arcy's Life and Work, The
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On Genes and Form Enrico Coen*, Richard Kennaway and Christopher Whitewoods
© 2017. Published by The Company of Biologists Ltd | Development (2017) 144, 4203-4213 doi:10.1242/dev.151910 REVIEW On genes and form Enrico Coen*, Richard Kennaway and Christopher Whitewoods ABSTRACT aside ‘not because I doubt for a moment the facts nor dispute the The mechanisms by which organisms acquire their sizes and shapes hypotheses nor decry the importance of one or other; but because we through growth was a major focus of D’Arcy Thompson’s book are so much in the dark as to the mysterious field of force in which the On Growth and Form. By applying mathematical and physical chromosomes lie, far from the visible horizon of physical science, principles to a range of biological forms, Thompson achieved fresh that the matter lies (for the present) beyond the range of problems ’ insights, such as the notion that diverse biological shapes could be which this book professes to discuss (p. 341, Thompson, 1942). related through simple deformations of a coordinate system. However, Much of the darkness and mystery Thompson refers to was lifted in Thompson considered genetics to lie outside the scope of his work, the second half of the 20th century, as the nature of genes and their even though genetics was a growing discipline at the time the mechanisms of action became clear. Nevertheless, the link between book was published. Here, we review how recent advances in cell, gene activity and the generation of form remained obscure, largely developmental, evolutionary and computational biology allow because of difficulties in determining growth patterns and relating Thompson’s ideas to be integrated with genes and the processes them to physico-chemical mechanisms. -
Claus Kahlert and Otto E. Rössler Institute for Physical and Theoretical Chemistry, University of Tübingen Z. Naturforsch
Chaos as a Limit in a Boundary Value Problem Claus Kahlert and Otto E. Rössler Institute for Physical and Theoretical Chemistry, University of Tübingen Z. Naturforsch. 39a, 1200- 1203 (1984); received November 8, 1984 A piecewise-linear. 3-variable autonomous O.D.E. of C° type, known to describe constant- shape travelling waves in one-dimensional reaction-diffusion media of Rinzel-Keller type, is numerically shown to possess a chaotic attractor in state space. An analytical method proving the possibility of chaos is outlined and a set of parameters yielding Shil'nikov chaos indicated. A symbolic dynamics technique can be used to show how the limiting chaos dominates the behavior even of the finite boundary value problem. Reaction-diffusion equations occur in many dis boundary conditions are assumed. This result was ciplines [1, 2], Piecewise-linear systems are especially obtained by an analytical matching method. The amenable to analysis. A variant to the Rinzel-Keller connection to chaos theory (Smale [6] basic sets) equation of nerve conduction [3] can be written as was not evident at the time. In the following, even the possibility of manifest chaos will be demon 9 ö2 — u u + p [- u + r - ß + e (ii - Ö)], strated. o t oa~ In Fig. 1, a chaotic attractor of (2) is presented. Ö The flow can be classified as an example of "screw- — r = - e u + r , (1) 0/ type-chaos" (cf. [7]). A second example of a chaotic attractor is shown in Fig. 2. A 1-D projection of a where 0(a) =1 if a > 0 and zero otherwise; d is the 2-D cross section through the chaotic flow in a threshold parameter. -
John Wells: Centenary Display Jonty Lees: Artist in Residence Autumn 2005 Winter 2007 6 October 2007 – 13 January 2008
Kenneth Martin & Mary Martin: Constructed Works John Wells: Centenary Display Jonty Lees: Artist in Residence Autumn 2005 Winter 2007 6 October 2007 – 13 January 2008 Notes for Teachers - 1 - Contents Introduction 3 Kenneth Martin & Marty Martin: Constructed Works 4 John Wells: Centenary Display 11 Jonty Lees: Artist in Residence 14 Bernard Leach and his Circle 17 Ways of Looking – Questions to Ask of Any Artwork 19 Suggested Activities 20 Tate Resources & Contacts 22 Further Reading 22 Key Art Terms 24 - 2 - Introduction The Winter 2007 displays present: Kenneth Martin and Mary Martin: Constructed Works (Gallery 1, 3, 4, and the Apse) This exhibition shows the work of two of Britain’s key post-war abstract artists, Kenneth Martin and Mary Martin. The exhibition includes nearly 50 works and focuses on Kenneth Martin’s mobiles and his later Chance and Order series of abstract paintings, alongside Mary Martin’s relief sculptures. Modernism and St Ives from 1940 (Lower Gallery 2) This display of artists associated with St Ives from the Tate Collection is designed to complement the Kenneth Martin and Mary Martin exhibition. It includes work by Mary Martin, Victor Pasmore, Anthony Hill and Adrian Heath alongside St Ives artists such as Peter Lanyon, Terry Frost and Ben Nicholson. John Wells: Centenary Display (The Studio) A small display of paintings and relief constructions by John Wells, designed to celebrate the centenary of his birth. Bernard Leach and his Circle (Upper Gallery 2) Ceramics by Bernard Leach and key studio potters who worked alongside him. These works form part of the Wingfield-Digby Collection, recently gifted to Tate St Ives. -
IV. on Growth and Form and D'arcy Wenworth Thompson
Modified 4th chapter from the novel „Problem promatrača“ („Problem of the observer“), by Antonio Šiber, Jesenski i Turk (2008). Uploaded on the author website, http://asiber.ifs.hr IV. On growth and form and D'Arcy Wenworth Thompson St. Andrews on the North Sea is a cursed town for me. In a winter afternoon in year 1941, a bearded, grey-haired eighty year old man with swollen eyes and big head covered by even bigger hat was descending down the hill side to the harbor. He had a huge butcher’s knife in his hand. A few workers that gathered around a carcass of a huge whale which the North Sea washed on the docks visibly retreated away from a disturbing scene of a tall and hairy figure with an impressive knife. The beardo approached the whale carcass and in less than a minute swiftly separated a thick layer of underskin fat, and then also several large pieces of meat. He carefully stored them in a linen bag that he threw over the shoulder and slowly started his return, uphill. The astonished workers watched the whole procedure almost breathlessly, and then it finally occurred to one of them who was looking in the back of a slowly distancing old man that it was not such a bad idea. It is a war time and shortage of meat. And if professor of natural philosophy Sir D’Arcy Thompson concluded that the fish is edible… Who would know better than him? After all, he thinks only of animals and plants. Of course, Thomson knew perfectly well that the whale is not fish, but to workers this was of not much importance. -
Perspectives
PERspECTIVES steady-state spatial patterns could also arise TIMELINE from such processes in living systems21. The full formalization of the nature of Self-organization in cell biology: self-organization processes came from the work of Prigogine on instabilities and the a brief history emergence of organization in ‘dissipative systems’ in the 1960s22–24, and from Haken who worked on similar issues under the Eric Karsenti name of synergetics11 (TIMELINE). Abstract | Over the past two decades, molecular and cell biologists have made It was clear from the outset that the emergence of dynamical organization important progress in characterizing the components and compartments of the observed in physical and chemical systems cell. New visualization methods have also revealed cellular dynamics. This has should be of importance to biology, and raised complex issues about the organization principles that underlie the scientists who are interested in the periodic emergence of coherent dynamical cell shapes and functions. Self-organization manifestations of life and developmental concepts that were first developed in chemistry and physics and then applied to biology have been actively working in this field19,25–29. From a more general point various morphogenetic problems in biology over the past century are now of view, Kauffman built on the ideas of beginning to be applied to the organization of the living cell. Prigogine and Haken in an attempt to explain the origin of order in biology30–32. One of the most fundamental problems in this complex state of living matter as a self- Self-organization was also invoked to biology concerns the origin of forms and organized end8–10. -
Copyrighted Material
1 Symmetry of Shapes in Biology: from D’Arcy Thompson to Morphometrics 1.1. Introduction Any attentive observer of the morphological diversity of the living world quickly becomes convinced of the omnipresence of its multiple symmetries. From unicellular to multicellular organisms, most organic forms present an anatomical or morphological organization that often reflects, with remarkable precision, the expression of geometric principles of symmetry. The bilateral symmetry of lepidopteran wings, the rotational symmetry of starfish and flower corollas, the spiral symmetry of nautilus shells and goat horns, and the translational symmetry of myriapod segments are all eloquent examples (Figure 1.1). Although the harmony that emanates from the symmetry of organic forms has inspired many artists, it has also fascinated generations of biologists wondering about the regulatory principles governing the development of these forms. This is the case for D’Arcy Thompson (1860–1948), for whom the organic expression of symmetries supported his vision of the role of physical forces and mathematical principles in the processes of morphogenesisCOPYRIGHTED and growth. D’Arcy Thompson’s MATERIAL work also foreshadowed the emergence of a science of forms (Gould 1971), one facet of which is a new branch of biometrics, morphometrics, which focuses on the quantitative description of shapes and the statistical analysis of their variations. Over the past two decades, morphometrics has developed a methodological Chapter written by Sylvain GERBER and Yoland SAVRIAMA. 2 Systematics and the Exploration of Life framework for the analysis of symmetry. The study of symmetry is today at the heart of several research programs as an object of study in its own right, or as a property allowing developmental or evolutionary inferences. -
D'arcy Wentworth Thompson
D’ARCY WENTWORTH THOMPSON Mathematically trained maverick zoologist D’Arcy Wentworth Thompson (May 2, 1860 –June 21, 1948) was among the first to cross the frontier between mathematics and the biological world and as such became the first true biomathematician. A polymath with unbounded energy, he saw mathematical patterns in everything – the mysterious spiral forms that appear in the curve of a seashell, the swirl of water boiling in a pan, the sweep of faraway nebulae, the thickness of stripes along a zebra’s flanks, the floret of a flower, etc. His premise was that “everything is the way it is because it got that way… the form of an object is a ‘diagram of forces’, in this sense, at least, that from it we can judge of or deduce the forces that are acting or have acted upon it.” He asserted that one must not merely study finished forms but also the forces that mold them. He sought to describe the mathematical origins of shapes and structures in the natural world, writing: “Cell and tissue, shell and bone, leaf and flower, are so many portions of matter and it is in obedience to the laws of physics that their particles have been moved, molded and conformed. There are no exceptions to the rule that God always geometrizes.” Thompson was born in Edinburgh, Scotland, the son of a Professor of Greek. At ten he entered Edinburgh Academy, winning prizes for Classics, Greek Testament, Mathematics and Modern Languages. At seventeen he went to the University of Edinburgh to study medicine, but two years later he won a scholarship to Trinity College, Cambridge, where he concentrated on zoology and natural science. -
Theory of the Growth and Evolution of Feather Shape
30JOURNAL R.O. PRUMOF EXPERIMENTAL AND S. WILLIAMSON ZOOLOGY (MOL DEV EVOL) 291:30–57 (2001) Theory of the Growth and Evolution of Feather Shape RICHARD O. PRUM* AND SCOTT WILLIAMSON Department of Ecology and Evolutionary Biology, and Natural History Museum, University of Kansas, Lawrence, Kansas 66045 ABSTRACT We present the first explicit theory of the growth of feather shape, defined as the outline of a pennaceous feather vane. Based on a reanalysis of data from the literature, we pro- pose that the absolute growth rate of the barbs and rachis ridges, not the vertical growth rate, is uniform throughout the follicle. The growth of feathers is simulated with a mathematical model based on six growth parameters: (1) absolute barb and rachis ridge growth rate, (2) angle of heli- cal growth of barb ridges, (3) initial barb ridge number, (4) new barb ridge addition rate, (5) barb ridge diameter, and (6) the angle of barb ramus expansion following emergence from the sheath. The model simulates growth by cell division in the follicle collar and, except for the sixth param- eter, does not account for growth by differentiation in cell size and shape during later keratiniza- tion. The model can simulate a diversity of feather shapes that correspond closely in shape to real feathers, including various contour feathers, asymmetrical feathers, and even emarginate prima- ries. Simulations of feather growth under different parameter values demonstrate that each pa- rameter can have substantial, independent effects on feather shape. Many parameters also have complex and redundant effects on feather shape through their influence on the diameter of the follicle, the barb ridge fusion rate, and the internodal distance. -
A Method of Constructing Phyllotaxically Arranged Modular Models by Partitioning the Interior of a Cylinder Or a Cone
A method of constructing phyllotaxically arranged modular models by partitioning the interior of a cylinder or a cone Cezary St¸epie´n Institute of Computer Science, Warsaw University of Technology, Poland [email protected] Abstract. The paper describes a method of partitioning a cylinder space into three-dimensional sub- spaces, congruent to each other, as well as partitioning a cone space into subspaces similar to each other. The way of partitioning is of such a nature that the intersection of any two subspaces is the empty set. Subspaces are arranged with regard to phyllotaxis. Phyllotaxis lets us distinguish privileged directions and observe parastichies trending these directions. The subspaces are created by sweeping a changing cross-section along a given path, which enables us to obtain not only simple shapes but also complicated ones. Having created these subspaces, we can put modules inside them, which do not need to be obligatorily congruent or similar. The method ensures that any module does not intersect another one. An example of plant model is given, consisting of modules phyllotaxically arranged inside a cylinder or a cone. Key words: computer graphics; modeling; modular model; phyllotaxis; cylinder partitioning; cone partitioning; genetic helix; parastichy. 1. Introduction Phyllotaxis is the manner of how leaves are arranged on a plant stem. The regularity of leaves arrangement, known for a long time, still absorbs the attention of researchers in the fields of botany, mathematics and computer graphics. Various methods have been used to describe phyllotaxis. A historical review of problems referring to phyllotaxis is given in [7]. Its connections with number sequences, e.g. -
Art and Engineering Inspired by Swarm Robotics
RICE UNIVERSITY Art and Engineering Inspired by Swarm Robotics by Yu Zhou A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy Approved, Thesis Committee: Ronald Goldman, Chair Professor of Computer Science Joe Warren Professor of Computer Science Marcia O'Malley Professor of Mechanical Engineering Houston, Texas April, 2017 ABSTRACT Art and Engineering Inspired by Swarm Robotics by Yu Zhou Swarm robotics has the potential to combine the power of the hive with the sen- sibility of the individual to solve non-traditional problems in mechanical, industrial, and architectural engineering and to develop exquisite art beyond the ken of most contemporary painters, sculptors, and architects. The goal of this thesis is to apply swarm robotics to the sublime and the quotidian to achieve this synergy between art and engineering. The potential applications of collective behaviors, manipulation, and self-assembly are quite extensive. We will concentrate our research on three topics: fractals, stabil- ity analysis, and building an enhanced multi-robot simulator. Self-assembly of swarm robots into fractal shapes can be used both for artistic purposes (fractal sculptures) and in engineering applications (fractal antennas). Stability analysis studies whether distributed swarm algorithms are stable and robust either to sensing or to numerical errors, and tries to provide solutions to avoid unstable robot configurations. Our enhanced multi-robot simulator supports this research by providing real-time simula- tions with customized parameters, and can become as well a platform for educating a new generation of artists and engineers. The goal of this thesis is to use techniques inspired by swarm robotics to develop a computational framework accessible to and suitable for both artists and engineers. -
Morphology and Mathematics. by D'arcy Wentworth Thompson. The
( 857 ) XXVII.—Morphology and Mathematics. By D'Arcy Wentworth Thompson. (Read December 7, 1914. MS. received February 1, 1915. Issued separately June 22, 1915.) The study of Organic Form, which we call by GOETHE'S name of Morphology, is but a portion of that wider Science of Form which deals with the forms assumed by matter under all aspects and conditions, and, in a still wider sense, with Forms which are theoretically imaginable. The study of Form may be descriptive merely, or it may become analytical. We begin by describing the shape of an object in the simple words of common speech : we end by denning it in the precise language of mathematics ; and the one method tends to follow the other in strict scientific order and historical continuity. Thus, fer instance, the form of the earth, of a raindrop or a rainbow, the shape of the hanging chain, or the path of a stone thrown up into the air, may all be described, however inadequately, in common words ; but when we have learned to comprehend and to define the sphere, the catenary, or the parabola, we have made a wonderful and perhaps a manifold advance. The mathematical definition of a "form" has a quality of precision which was quite lacking in our earlier stage of mere description ; it is expressed in few words, or in still briefer symbols, and these words or symbols are so pregnant with meaning that thought itself is economised ; we are brought by means of it in touch with GALILEO'S aphorism, that " the Book of Nature is written in characters of Geometry." Next, we soon reach through mathematical analysis to mathematical synthesis ; we discover homologies or identities which were not obvious before, and which our descriptions obscured rather than revealed : as, for instance, when we learn that, however we hold our chain, or however we fire our bullet, the contour of the one or the path of the other is always mathematically homologous. -
On Hybrid Creativity
arts Article On Hybrid Creativity Andy Lomas ID Department of Computing, Goldsmiths College, University of London, London SE14 6NW, UK; [email protected] Received: 2 May 2018; Accepted: 5 July 2018; Published: 9 July 2018 Abstract: This article reviews the development of the author’s computational art practice, where the computer is used both as a device that provides the medium for generation of art (‘computer as art’) as well as acting actively as an assistant in the process of creating art (‘computer as artist’s assistant’), helping explore the space of possibilities afforded by generative systems. Drawing analogies with Kasparov’s Advanced Chess and the deliberate development of unstable aircraft using fly-by-wire technology, the article argues for a collaborative relationship with the computer that can free the artist to more fearlessly engage with the challenges of working with emergent systems that exhibit complex unpredictable behavior. The article also describes ‘Species Explorer’, the system the author has created in response to these challenges to assist exploration of the possibilities afforded by parametrically driven generative systems. This system provides a framework to allow the user to use a number of different techniques to explore new parameter combinations, including genetic algorithms, and machine learning methods. As the system learns the artist’s preferences the relationship with the computer can be considered to change from one of assistance to collaboration. Keywords: art; computer; evolutionary design; machine learning; computationally assisted design 1. Introduction How are we to work creatively with generative systems that computationally create results? In particular, how should we work with systems deliberately designed to encourage emergence: complex systems where results are intrinsically difficult to predict? There is a strong analogy with plant breeding, where we are working with a medium that is naturally rich.