The Current State of Foraminiferal Research and Future Goals
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20. Infome Variabilidad Climatica 2019
ASPECTOS BIO-OCEANOGRÁFICOS OBSERVADOS EN DOS ESTACIONES 10 MILLAS COSTA AFUERA, DURANTE EL 2019 INTRODUCCIÓN El Instituto Nacional de Pesca (INP) a través de su programa Variabilidad Climática monitorea de manera mensual las condiciones oceanográficas (físico, químicas y biológicas) de dos estaciones ubicadas 10 millas fuera de la costa ecuatoriana; Puerto López y Salinas (Figura 1). El objetivo principal de este programa es analizar los procesos oceanográficos presentes en los ecosistemas marino-costeros, tomando en cuenta las variaciones espacio-temporales y productividad del océano. De esta manera, se busca relacionar la información obtenida durante las campañas con la distribución, abundancia y biomasa de los recursos pesqueros de interés comercial del país. El mar es un entorno dinámico, influenciado por la geografía del fondo marino y por el clima, de acuerdo a Riley & Chester (1989), los elementos nutritivos, se detectan en el mar en bajas y constantes concentraciones, puesto que las actividades de los organismos vivos produce solo un cambio pequeño o indetectable en su concentración, pero también son los responsables de la eliminación o excreción de cantidades considerables de micronutrientes en relación con la cantidad total presente; para Cushing et al., (1975), las concentraciones registrada de nutrientes, son consecuencia del proceso de producción y no a la inversa, cuya investigación tiene el carácter de una regresión inacabable. Estos constituyentes presentan una marcada variabilidad, la cual restringe la dinámica de exportaciones de nutrientes y carbono orgánico del margen costero ( Helmke et.al., 2005) estableciendo patrones diferentes de distribución que favorecerán la acumulación de nutrientes o la dispersión de los mismos, condiciones influenciadas por los cambios estacionales del viento, situación topográfica, y del sistema de intercambio y/o mezcla con la capa subsuperficial. -
Form and Function of F-Actin During Biomineralization Revealed from Live Experiments on Foraminifera
Form and function of F-actin during biomineralization revealed from live experiments on foraminifera Jarosław Tyszkaa,1, Ulf Bickmeyerb, Markus Raitzschc,d, Jelle Bijmac, Karina Kaczmarekc, Antje Mewesc, Paweł Topae, and Max Jansef aResearch Centre in Kraków, Institute of Geological Sciences, Polish Academy of Sciences, 31-002 Kraków, Poland; bEcological Chemistry, Alfred-Wegener- Institut Helmholtz-Zentrum für Polar- und Meeresforschung, D-27570 Bremerhaven, Germany; cMarine Biogeosciences, Alfred-Wegener-Institut Helmholtz- Zentrum für Polar- und Meeresforschung, D-27570 Bremerhaven, Germany; dInstitut für Mineralogie, Leibniz Universität Hannover, 30167 Hannover, Germany; eDepartment of Computer Science, AGH University of Science and Technology, 30-052, Kraków, Poland; and fBurgers’ Ocean, Royal Burgers’ Zoo, 6816 SH Arnhem, The Netherlands Edited by Lia Addadi, Weizmann Institute of Science, Rehovot, Israel, and approved January 23, 2019 (received for review June 15, 2018) Although the emergence of complex biomineralized forms has Pioneers who studied living foraminifera described that been investigated for over a century, still little is known on how chamber formation was progressing on what they called “active single cells control morphology of skeletal structures, such as matrix” (15, 16). Hottinger (1) suggested that foraminiferal frustules, shells, spicules, or scales. We have run experiments on chamber morphology depended on the length of rhizopodia the shell formation in foraminifera, unicellular, mainly marine (branching pseudopodia) extruded from the previous chamber organisms that can build shells by successive additions of chambers. and supported by microtubular cytoskeleton. Recent investiga- We used live imaging to discover that all stages of chamber/shell tions on theoretical models of foraminiferal morphogenesis implied formation are controlled by dedicated actin-driven pseudopodial structures. -
Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 10-1-2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life Laura Wegener Parfrey University of Massachusetts Amherst Jessica Grant Smith College Yonas I. Tekle Smith College Erica Lasek-Nesselquist Marine Biological Laboratory Hilary G. Morrison Marine Biological Laboratory See next page for additional authors Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Parfrey, Laura Wegener; Grant, Jessica; Tekle, Yonas I.; Lasek-Nesselquist, Erica; Morrison, Hilary G.; Sogin, Mitchell L.; Patterson, David J.; and Katz, Laura A., "Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life" (2010). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/126 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Authors Laura Wegener Parfrey, Jessica Grant, Yonas I. Tekle, Erica Lasek-Nesselquist, Hilary G. Morrison, Mitchell L. Sogin, David J. Patterson, and Laura A. Katz This article is available at Smith ScholarWorks: https://scholarworks.smith.edu/bio_facpubs/126 Syst. Biol. 59(5):518–533, 2010 c The Author(s) 2010. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/syq037 Advance Access publication on July 23, 2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life LAURA WEGENER PARFREY1,JESSICA GRANT2,YONAS I. TEKLE2,6,ERICA LASEK-NESSELQUIST3,4, 3 3 5 1,2, HILARY G. -
Foraminifera • Foraminifers Are Found in All Marine Environments
Foraminifera • Foraminifers are found in all marine environments. Some are adapted to brackish water. There are none in fresh water. Two life modes are recognized: • Benthic . These are forms that live on the sea floor, either on the surface of the sediment (epifauna) or buried in it (infauna). • Planktonic . These are forms which float passively, moved only by currents but capable of vertica migration. Some planktonic foraminifers (their largest dimension on the order of a half-millimeter). Small benthic foraminifers (their largest dimension on the order of a half-centimeter). Some large benthic foraminifers (their largest dimension on the order of a centimeter). Planktonic Foraminifera Globigerina bulloides Globorotalia menardii d'Orbigny (Parker, Jones and Brady) Pliocene-Recent Pliocene-Recent Globigerina bulloides d'Orbigny Hantkenina alabamensis Cushman, 1927 Pliocene-Recent Eocene Globigerinoides ruber Pseudohastigerina micra d'Orbigny (Cole, 1927) Miocene-Recent Eocene-Oligocene Globorotalia inflata Globorotalia cerro- d'Orbigny azulensis Cole, 1928 Pliocene-Recent Eocene Globorotalia menardii Parasubbotina (Parker, Jones and pseudobulloides Brady) (Plummer, 1926) Pliocene-Recent Lower-Middle Palaeocene Planktonic Foraminifera Racemiguembelina Subbotina triloculinoides fructicosa (Egger) (Plummer, 1926) Middle-Uppper lower-upper Palaeocene Maastrichtian (Upper Cretaceous) Pseudotextularia elegans (Rzehak) Abathomphalus mayaroensis (Bolli) Campanian- Maastrichtian (Upper Upper Maastrichtian Cretaceous (Upper Cretaceous) Hedbergella -
September 2002
RADI LARIA VOLUME 20 SEPTEMBER 2002 NEWSLETTER OF THE INTERNATIONAL ASSOCIATION OF RADIOLARIAN PALEONTOLOGISTS ISSN: 0297.5270 INTERRAD International Association of Radiolarian Paleontologists A Research Group of the International Paleontological Association Officers of the Association President Past President PETER BAUMBARTNER JOYCE R. BLUEFORD Lausanne, Switzerland California, USA [email protected] [email protected] Secretary Treasurer JONATHAN AITCHISON ELSPETH URQUHART Department of Earth Sciences JOIDES Office University of Hong Kong Department of Geology and Geophysics Pokfulam Road, University of Miami - RSMAS Hong Kong SAR, 4600 Rickenbacker Causeway CHINA Miami FL 33149 Florida Tel: (852) 2859 8047 Fax: (852) 2517 6912 U.S.A. e-mail: [email protected] Tel: 1-305-361-4668 Fax: 1-305-361-4632 Email: [email protected] Working Group Chairmen Paleozoic Cenozoic PATRICIA, WHALEN, U.S.A. ANNIKA SANFILIPPO California, U.S.A. [email protected] [email protected] Mesozoic Recent RIE S. HORI Matsuyama, JAPAN DEMETRIO BOLTOVSKOY Buenos Aires, ARGENTINA [email protected] [email protected] INTERRAD is an international non-profit organization for researchers interested in all aspects of radiolarian taxonomy, palaeobiology, morphology, biostratigraphy, biology, ecology and paleoecology. INTERRAD is a Research Group of the International Paleontological Association (IPA). Since 1978 members of INTERRAD meet every three years to present papers and exchange ideas and materials INTERRAD MEMBERSHIP: The international Association of Radiolarian Paleontologists is open to any one interested on receipt of subscription. The actual fee US $ 15 per year. Membership queries and subscription send to Treasurer. Changes of address can be sent to the Secretary. -
Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future Jan Pawlowski, Franck Lejzerowicz, Philippe Esling
Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future Jan Pawlowski, Franck Lejzerowicz, Philippe Esling To cite this version: Jan Pawlowski, Franck Lejzerowicz, Philippe Esling. Next-Generation Environmental Diversity Sur- veys of Foraminifera: Preparing the Future . Biological Bulletin, Marine Biological Laboratory, 2014, 227 (2), pp.93-106. 10.1086/BBLv227n2p93. hal-01577891 HAL Id: hal-01577891 https://hal.archives-ouvertes.fr/hal-01577891 Submitted on 28 Aug 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/268789818 Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future Article in Biological Bulletin · October 2014 Source: PubMed CITATIONS READS 26 41 3 authors: Jan Pawlowski Franck Lejzerowicz University of Geneva University of Geneva 422 PUBLICATIONS 11,852 CITATIONS 42 PUBLICATIONS 451 CITATIONS SEE PROFILE SEE PROFILE Philippe Esling Institut de Recherche et Coordination Acoust… 24 PUBLICATIONS 551 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: UniEuk View project KuramBio II (Kuril Kamchatka Biodiversity Studies II) View project All content following this page was uploaded by Jan Pawlowski on 30 December 2015. -
Systematic Paleontology, Distribution and Abundance of Cenozoic Benthic Foraminifera from Kish Island, Persian Gulf, Iran
Journal of the Persian Gulf (Marine Science)/Vol. 8/No. 28/ June 2017/22/19-40 Systematic Paleontology, Distribution and Abundance of Cenozoic Benthic Foraminifera from Kish Island, Persian Gulf, Iran Fahimeh Hosseinpour1, Ali Asghar Aryaei1*, Morteza Taherpour-Khalil-Abad2 1- Department of Geology, Mashhad Branch, Islamic Azad University, Mashhad, Iran 2- Young Researchers and Elite Club, Mashhad Branch, Islamic Azad University, Mashhad, Iran Received: January 2017 Accepted: June 2017 © 2017 Journal of the Persian Gulf. All rights reserved. Abstract Foraminifera are one of the most important fossil microorganisms in the Persian Gulf. During micropaleontological investigations in 5 sampling stations around the Kish Island, 14 genera and 15 species of dead Cenozoic benthic foraminifera were determined and described. Next to these assemblages, other organisms, such as microgastropods and spines of echinids were also looked into. In this study, the statistical analysis of foraminiferal distribution was done in one depth-zone (60-150 m and compared with the Australian-Iran Jaya Continental margin depth- zone. Keywords: Foraminifera, Distribution analysis, Kish Island, Persian Gulf, Iran Downloaded from jpg.inio.ac.ir at 9:20 IRST on Monday October 4th 2021 1. Introduction approximately 226000 km2. Its average depth is about 35 m, and it attains its maximum depth about Persian Gulf is the location of phenomenal 100 m near its entrance - the Straits of Hormuz (for hydrocarbon reserves and an area of the world where more details see details in Seibold and Vollbrecht, the oil industry is engaged in intense hydrocarbon 1969; Seibold and Ulrich 1970). It is virtually exploration and extraction. -
We Would Like to Thank the Referees for Constructive Review, That Helped Us to Improve the Manuscript
We would like to thank the Referees for constructive review, that helped us to improve the manuscript. Written below are our responses to the Referee’s comments. The comments were reproduced and are followed by our responses. Anonymous Referee #1 This paper presents an interesting multiproxy dataset to document the paleoceanography near Svalbard and compares traditional sedimentary and microfossil proxies with a novel approach involving ancient environmental DNA. As such, the dataset certainly deserves publishing, but I have some comments/reservations about the age model and the discussion of the results. The discussion has some writing-technical issues. In several cases the own results are presented, without clear arguments supporting the interpretation (e.g. P12, L9–11 & L28–30; P15, L12– 15) but rather followed by a literature review. The own results need to be better used to document the paleoceanographic/ environmental signal that is gained from this new site and data, before comparing to the literature. Figures integrating the own results with key records from previous studies is also advised. Major comments Referee’s comment: First of all, the raw data needs to be made publicly available and/or presented with the manuscript. Needed are tables that list unique sample labels and relevant metadata such as core coordinates, sampling depths, measured data for each proxy (sedimentology, foraminifer assemblage data, stable isotopes and aDNA), etc. Response: According to the Reviewer’s suggestion, the raw data will be provided as electronic supplementary material. Referee’s comment: Age model. The ages used for the age model seem arbitrary. What is the argument to choose 1500, 2700 and 7890 yr BP? Those ages are not the average of the 2 sigma calibrated yrs BP. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Tsunami-Generated Rafting of Foraminifera Across the North Pacific Ocean
Aquatic Invasions (2018) Volume 13, Issue 1: 17–30 DOI: https://doi.org/10.3391/ai.2018.13.1.03 © 2018 The Author(s). Journal compilation © 2018 REABIC Special Issue: Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011 Research Article Tsunami-generated rafting of foraminifera across the North Pacific Ocean Kenneth L. Finger University of California Museum of Paleontology, Valley Life Sciences Building – 1101, Berkeley, CA 94720-4780, USA E-mail: [email protected] Received: 9 February 2017 / Accepted: 12 December 2017 / Published online: 15 February 2018 Handling editor: James T. Carlton Co-Editors’ Note: This is one of the papers from the special issue of Aquatic Invasions on “Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011." The special issue was supported by funding provided by the Ministry of the Environment (MOE) of the Government of Japan through the North Pacific Marine Science Organization (PICES). Abstract This is the first report of long-distance transoceanic dispersal of coastal, shallow-water benthic foraminifera by ocean rafting, documenting survival and reproduction for up to four years. Fouling was sampled on rafted items (set adrift by the Tohoku tsunami that struck northeastern Honshu in March 2011) landing in North America and the Hawaiian Islands. Seventeen species of shallow-water benthic foraminifera were recovered from these debris objects. Eleven species are regarded as having been acquired in Japan, while two additional species (Planogypsina squamiformis (Chapman, 1901) and Homotrema rubra (Lamarck, 1816)) were obtained in the Indo-Pacific as those objects drifted into shallow tropical waters before turning north and east to North America. -
Elphidium Williamsoni
QUANTIFICATION OF THE EFFECTS OF OCEAN ACIDIFICATION ON BENTHIC FORAMINIFERA Luis Fabricio Guamán Guevara A Thesis Submitted for the Degree of PhD at the University of St Andrews 2019 Full metadata for this thesis is available in St Andrews Research Repository at: http://research-repository.st-andrews.ac.uk/ Please use this identifier to cite or link to this thesis: http://hdl.handle.net/10023/17792 This item is protected by original copyright This item is licensed under a Creative Commons License https://creativecommons.org/licenses/by-nc-nd/4.0 Quantification of the effects of ocean acidification on benthic foraminifera Luis Fabricio Guamán Guevara This thesis is submitted in partial fulfilment for the degree of Doctor of Philosophy (PhD) at the University of St Andrews October 2018 Candidate's declaration I, Luis Fabricio Guaman Guevara, do hereby certify that this thesis, submitted for the degree of PhD, which is approximately 53,000 words in length, has been written by me, and that it is the record of work carried out by me, or principally by myself in collaboration with others as acknowledged, and that it has not been submitted in any previous application for any degree. I was admitted as a research student at the University of St Andrews in November 2014. I received funding from an organisation or institution and have acknowledged the funder(s) in the full text of my thesis. Date Signature of candidate Supervisor's declaration I hereby certify that the candidate has fulfilled the conditions of the Resolution and Regulations appropriate for the degree of PhD in the University of St Andrews and that the candidate is qualified to submit this thesis in application for that degree.