Characterization of Apis Mellifera Gastrointestinal Microbiota and Lactic Acid Bacteria for Honeybee Protection—A Review
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A Taxonomic Note on the Genus Lactobacillus
Taxonomic Description template 1 A taxonomic note on the genus Lactobacillus: 2 Description of 23 novel genera, emended description 3 of the genus Lactobacillus Beijerinck 1901, and union 4 of Lactobacillaceae and Leuconostocaceae 5 Jinshui Zheng1, $, Stijn Wittouck2, $, Elisa Salvetti3, $, Charles M.A.P. Franz4, Hugh M.B. Harris5, Paola 6 Mattarelli6, Paul W. O’Toole5, Bruno Pot7, Peter Vandamme8, Jens Walter9, 10, Koichi Watanabe11, 12, 7 Sander Wuyts2, Giovanna E. Felis3, #*, Michael G. Gänzle9, 13#*, Sarah Lebeer2 # 8 '© [Jinshui Zheng, Stijn Wittouck, Elisa Salvetti, Charles M.A.P. Franz, Hugh M.B. Harris, Paola 9 Mattarelli, Paul W. O’Toole, Bruno Pot, Peter Vandamme, Jens Walter, Koichi Watanabe, Sander 10 Wuyts, Giovanna E. Felis, Michael G. Gänzle, Sarah Lebeer]. 11 The definitive peer reviewed, edited version of this article is published in International Journal of 12 Systematic and Evolutionary Microbiology, https://doi.org/10.1099/ijsem.0.004107 13 1Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology, Hubei Key 14 Laboratory of Agricultural Bioinformatics, Wuhan, Hubei, P.R. China. 15 2Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience 16 Engineering, University of Antwerp, Antwerp, Belgium 17 3 Dept. of Biotechnology, University of Verona, Verona, Italy 18 4 Max Rubner‐Institut, Department of Microbiology and Biotechnology, Kiel, Germany 19 5 School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland 20 6 University of Bologna, Dept. of Agricultural and Food Sciences, Bologna, Italy 21 7 Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Vrije Universiteit 22 Brussel, Brussels, Belgium 23 8 Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, 24 Belgium 25 9 Department of Agricultural, Food & Nutritional Science, University of Alberta, Edmonton, Canada 26 10 Department of Biological Sciences, University of Alberta, Edmonton, Canada 27 11 National Taiwan University, Dept. -
Genomic Diversity Landscape of the Honey Bee Gut Microbiota
ARTICLE https://doi.org/10.1038/s41467-019-08303-0 OPEN Genomic diversity landscape of the honey bee gut microbiota Kirsten M. Ellegaard 1 & Philipp Engel 1 The structure and distribution of genomic diversity in natural microbial communities is largely unexplored. Here, we used shotgun metagenomics to assess the diversity of the honey bee gut microbiota, a community consisting of few bacterial phylotypes. Our results show that 1234567890():,; most phylotypes are composed of sequence-discrete populations, which co-exist in individual bees and show age-specific abundance profiles. In contrast, strains present within these sequence-discrete populations were found to segregate into individual bees. Consequently, despite a conserved phylotype composition, each honey bee harbors a distinct community at the functional level. While ecological differentiation seems to facilitate coexistence at higher taxonomic levels, our findings suggest that, at the level of strains, priority effects during community assembly result in individualized profiles, despite the social lifestyle of the host. Our study underscores the need to move beyond phylotype-level characterizations to understand the function of this community, and illustrates its potential for strain-level analysis. 1 Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland. Correspondence and requests for materials should be addressed to K.M.E. (email: [email protected]) or to P.E. (email: [email protected]) NATURE COMMUNICATIONS | (2019) 10:446 | https://doi.org/10.1038/s41467-019-08303-0 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-019-08303-0 ost bacteria live in genetically diverse and highly com- same species name22. -
The Bumble Bee Microbiome Increases Survival of Bees Exposed to Selenate Toxicity
Full Title The bumble bee microbiome increases survival of bees exposed to selenate toxicity. Running title The microbiome increases survival of selenate-exposed bumble bees. Jason A. Rothmanab, Laura Legerb, Peter Graystockbc, Kaleigh Russellb, and Quinn S. McFrederickab# a. Graduate Program in Microbiology, University of California, Riverside, CA 92521, USA b. Department of Entomology, University of California, Riverside, CA, 92521, USA c. Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK # Corresponding Author: Department of Entomology, 900 University Ave., University of California, Riverside, CA 92521, [email protected], (951) 827-5817 Competing Interests The authors declare that we have no competing interests. This research was supported by Initial Complement funds and NIFA Hatch funds (CA-R-ENT-5109-H) from UC Riverside to Quinn McFrederick and through fellowships awarded to Jason A. Rothman by the National Aeronautics This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/1462-2920.14641 This article is protected by copyright. All rights reserved. and Space Administration MIRO Fellowships in Extremely Large Data Sets (Award No: NNX15AP99A) and the United States Department of Agriculture National Institute of Food and Agriculture Predoctoral Fellowship (Award No. 2018-67011-28123). This article is protected by copyright. All rights reserved. Originality-Significance Statement The symbiotic microbiome of insects has been implicated in pathogen defense, nutrient digestion, immune signaling and toxicant mitigation. -
Common Structuring Principles of the Drosophila Melanogaster Microbiome on a Continental Scale and Between Host and Substrate
Environmental Microbiology Reports (2020) 12(2), 220–228 doi:10.1111/1758-2229.12826 Brief Report Common structuring principles of the Drosophila melanogaster microbiome on a continental scale and between host and substrate Yun Wang, 1,2 Martin Kapun, 1,3,4 Lena Waidele, 1,2 Introduction Sven Kuenzel,5 Alan O. Bergland 1,6 and Environmental factors and stochastic processes play Fabian Staubach 1,2* important roles in shaping microbiomes (Spor et al., 1The European Drosophila Population Genomics 2011; van Opstal and Bordenstein, 2015). Recent data Consortium (DrosEU). across a variety of hosts, including mammals and 2Department of Evolutionary Biology and Animal insects, suggest that environmental factors like host diet Ecology, Biology I, University of Freiburg, Freiburg im often have a dominant effect on microbiome composition Breisgau, Germany. (Chandler et al., 2011; Wu et al., 2011; Staubach et al., 3Department of Evolutionary Biology and Environmental 2013; Wang et al., 2014; Waidele et al., 2017; Rothschild Studies, University of Zürich, Zürich, Switzerland. 4Department of Cell and Developmental Biology, et al., 2018). In order to explain variation between Medical University of Vienna, Vienna, Austria. microbiomes from the same species, stochastic, ecologi- 5Max Planck Institute for Evolutionary Biology, Plön, cally neutral processes have moved into focus. These Germany. processes comprise ecological drift, dispersal and coloni- 6Department of Biology, University of Virginia, zation history. It appears plausible for diverse species Charlottesville, VA, USA. (Sieber et al., 2019), including Drosophila (Adair et al., 2018) that neutral processes dominate microbiome assembly. Summary The ability of D. melanogaster to shape its associated The relative importance of host control, environmental microbiome might be limited (Blum et al., 2013; Wong effects and stochasticity in the assemblage of host- et al., 2013). -
Bacterial Diversity Shift Determined by Different Diets in the Gut of the Spotted Wing Fly Drosophila Suzukii Is Primarily Reflected on Acetic Acid Bacteria
Bacterial diversity shift determined by different diets in the gut of the spotted wing fly Drosophila suzukii is primarily reflected on acetic acid bacteria Item Type Article Authors Vacchini, Violetta; Gonella, Elena; Crotti, Elena; Prosdocimi, Erica M.; Mazzetto, Fabio; Chouaia, Bessem; Callegari, Matteo; Mapelli, Francesca; Mandrioli, Mauro; Alma, Alberto; Daffonchio, Daniele Citation Vacchini V, Gonella E, Crotti E, Prosdocimi EM, Mazzetto F, et al. (2016) Bacterial diversity shift determined by different diets in the gut of the spotted wing fly Drosophila suzukii is primarily reflected on acetic acid bacteria. Environmental Microbiology Reports. Available: http://dx.doi.org/10.1111/1758-2229.12505. Eprint version Post-print DOI 10.1111/1758-2229.12505 Publisher Wiley Journal Environmental Microbiology Reports Rights This is the peer reviewed version of the following article: Vacchini, V., Gonella, E., Crotti, E., Prosdocimi, E. M., Mazzetto, F., Chouaia, B., Callegari, M., Mapelli, F., Mandrioli, M., Alma, A. and Daffonchio, D. (2016), Bacterial diversity shift determined by different diets in the gut of the spotted wing fly Drosophila suzukii is primarily reflected on acetic acid bacteria. Environmental Microbiology Reports. Accepted Author Manuscript. doi:10.1111/1758-2229.12505, which has been published in final form at http://onlinelibrary.wiley.com/ doi/10.1111/1758-2229.12505/abstract. This article may be used for non-commercial purposes in accordance With Wiley Terms and Conditions for self-archiving. Download date 02/10/2021 16:15:24 Link to Item http://hdl.handle.net/10754/622736 Bacterial diversity shift determined by different diets in the gut of the spotted wing fly Drosophila suzukii is primarily reflected on acetic acid bacteria Violetta Vacchini1#, Elena Gonella2#, Elena Crotti1#, Erica M. -
Molecular Diagnosis and Characterization of Honey Bee Pathogens
Molecular Diagnosis and Characterization of Honey Bee Pathogens Eva Forsgren Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2009 Acta Universitatis Agriculturae Sueciae 2009:79 Cover: Honey bee with symptoms of deformed wing virus infection (Photo: Vitezslav Manak) ISSN 1652-6880 ISBN 978-91-576-7426-5 © 2009 Eva Forsgren, Uppsala Print: SLU Service/Repro, Uppsala 2009 Molecular Diagnosis and Characterization of Honey Bee Pathogens Abstract Bees are crucial for maintaining biodiversity by pollination of numerous plant species. The European honey bee, Apis mellifera, is of great importance not only for the honey they produce, but also as vital pollinators of agricultural and horticultural crops. The economical value of pollination has been estimated to be several billion dollars, and pollinator declines are a global biodiversity threat. Hence, honey bee health has great impact on the economy, food production and biodiversity worldwide. A broad spectrum of specific pathogens affect the honey bee colony including bacteria, viruses, microscopic fungi, and internal and external parasites. Some of these microorganisms and parasites are more harmful than others and infections/infestations may lead to colony collapse. Knowledge of the biology and epidemiology of these pathogens are needed for prevention of disease outbreak. The use of molecular methods has increased during recent years offering a selection of powerful tools for laboratories involved in honey bee disease diagnostics and research. Novel diagnostic techniques also allow for new approaches to honey bee pathology where specific and critical questions can be answered using modern molecular technology. This thesis focuses on molecular techniques and their application within honey bee pathology. -
Isolation and Characterization of European Foulbrood Antagonistic Bacteria from the Gastrointestine of the Japanese Honeybee Apis Cerana Japonica
Isolation and Characterization of European Foulbrood Antagonistic Bacteria from the Gastrointestine of the Japanese Honeybee Apis cerana japonica 著者 呉 梅花 内容記述 この博士論文は一部が非公開になっています year 2013 学位授与大学 筑波大学 (University of Tsukuba) 学位授与年度 2013 報告番号 12102甲第6707号 URL http://hdl.handle.net/2241/00122071 Isolation and Characterization of European Foulbrood Antagonistic Bacteria from the Gastrointestine of the Japanese Honeybee Apis cerana japonica April 2013 Meihua WU Isolation and Characterization of European Foulbrood Antagonistic Bacteria from the Gastrointestine of the Japanese Honeybee Apis cerana japonica A Dissertation Submitted to the Graduate School of Life and Environmental Science, the University of Tsukuba in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Agricultural Science (Doctoral Program in Biosphere Resource Science and Technology) Meihua WU Summary Bacteria were isolated from the digestive tract of the Japanese honeybee using a culture-dependent method to investigate antagonistic effects of honeybee intestinal bacteria. Forty-five bacterial strains belonging to nine genera, Bifidobacterium, Lactobacillus, Bacillus, Streptomyces, Pantoea, Stenotrophomonas, Paenibacillus, Lysinibacillus and Staphylococcus were obtained in this study. Among these, 11 strains were closely related to bifidobacteria previously isolated from the European honeybee A. mellifera, which are distinct from bumblebee gastrointestinal bifidobacteria. On the other hand, 17 strains were identified as lactobacilli, another important lactic acid bacteria. According to the results of 16S rRNA gene sequence similarity and phylogenetic analysis, some lactobacilli strains are likely novel species. In addition, lactobacilli obtained in this study were similar to lactobacilli associated with Apis species but distant from those of bumblebees, implying that honeybee species share some Apis species-specific bacteria in their gut bacterial communities. -
Uludağ Arıcılık Dergisi 2020-1
Atıf/Citation: Bengü, AŞ., Kutlu, MA. 2020. Bingöl’den Temin Edilen Ballarda ICP-MS ile Bazı Temel ve Toksik Elementlerin Analizi (Analysis of Some Essential and Toxic Elements by ICP-MS in Honey Obtained from Bingol). U.Arı D.-U. Bee. J. 20(1): 1-12, DOI: 10.31467/uluaricilik.648631 ARAŞTIRMA MAKALESİ / RESEARCH ARTICLE BİNGÖL’DEN TEMİN EDİLEN BALLARDA ICP-MS İLE BAZI TEMEL VE TOKSİK ELEMENTLERİN ANALİZİ Analysis of Some Essential and Toxic Elements by ICP-MS in Honey Obtained from Bingol Aydın Şükrü BENGÜ1, Mehmet Ali KUTLU2 1Bingöl Üniversitesi Sağlık Hizmetleri MYO, TÜRKİYE, ORCID NO: 0000-0002-7635-4855, Yazışma Yazarı / Corresponding author: E-mail: [email protected] 2Bingöl Üniversitesi Teknik Bilimler Meslek Yüksek Okulu Arıcılık Programı, TÜRKİYE, ORCID NO: 0000-0003-0862- 9690, E-posta: [email protected] Geliş Tarihi / Received:11.11.2019 Kabul Tarihi / Accepted: 28.01.2020 DOI: 10.31467/uluaricilik.648631 ÖZET Araştırma Bingöl’de 2019 yılı bal hasat sonrası elde edilen süzme ballardaki bazı elementlerin ve ağır metallerin tespitine yönelik olarak yapılmıştır. Bal üretim alanlarından temin edilen 11 adet süzme bal örneklerinde bazı elementlerin ve ağır metallerin düzeyleri ICP-MS (İndüktif Eşleşmiş Plazma-Kütle Spektrometresi) ile belirlenmiştir. Bal örneklerinde As, Cd, Cs, Hg, Li, Pb, Se elementlerine rastlanmamış olup diğer elementler ve ağır metaller ortalama; Al 14,10 ±12,68 ppb, Ca 157,69±42,40 ppb, Cr 2,51±0,58 ppb, Cu 0,98±0,38 ppb, Fe 28,84±12,92 ppb, K 3920,12±1806,12 ppb, Mg 128,66± 33,08 ppb, Mn 3,93±2,61 ppb, Na 138,98±61,21 ppb, Ni 2,02±0,65 ppb ve Zn 9,71±6,74 ppb olarak tespit edilmiştir. -
Survey and Molecular Detection of Melissococcus Plutonius, the Causative Agent of European Foulbrood in Honeybees in Saudi Arabia
Saudi Journal of Biological Sciences (2017) 24, 1327–1335 King Saud University Saudi Journal of Biological Sciences www.ksu.edu.sa www.sciencedirect.com ORIGINAL ARTICLE Survey and molecular detection of Melissococcus plutonius, the causative agent of European Foulbrood in honeybees in Saudi Arabia Mohammad Javed Ansari a,*, Ahmad Al-Ghamdi a, Adgaba Nuru a, Ashraf Mohamed Ahmed b, Tahany H. Ayaad b, Abdulaziz Al-Qarni c, Yehya Alattal a, Noori Al-Waili d a Bee Research Chair, Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, PO Box 2460, Riyadh 11451, Saudi Arabia b Department of Zoology, College of Science, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia c Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, PO Box 2460, Riyadh 11451, Saudi Arabia d Institute for Wound Care and Hyperbaric Medicine, NewYork-Presbyterian/Hudson Valley Hospital, USA Received 12 May 2016; revised 5 October 2016; accepted 9 October 2016 Available online 28 October 2016 KEYWORDS Abstract A large-scale field survey was conducted to screen major Saudi Arabian beekeeping loca- Honeybee; tions for infection by Melissococcus plutonius. M. plutonius is one of the major bacterial pathogens Molecular detection; of honeybee broods and is the causative agent of European Foulbrood disease (EFB). Larvae from Melissococcus plutonius; samples suspected of infection were collected from different apiaries and homogenized in phosphate Saudi Arabia buffered saline (PBS). Bacteria were isolated on MYPGP agar medium. Two bacterial isolates, ksuMP7 and ksuMP9 (16S rRNA GenBank accession numbers, KX417565 and KX417566, respec- tively), were subjected to molecular identification using M. -
CGM-18-001 Perseus Report Update Bacterial Taxonomy Final Errata
report Update of the bacterial taxonomy in the classification lists of COGEM July 2018 COGEM Report CGM 2018-04 Patrick L.J. RÜDELSHEIM & Pascale VAN ROOIJ PERSEUS BVBA Ordering information COGEM report No CGM 2018-04 E-mail: [email protected] Phone: +31-30-274 2777 Postal address: Netherlands Commission on Genetic Modification (COGEM), P.O. Box 578, 3720 AN Bilthoven, The Netherlands Internet Download as pdf-file: http://www.cogem.net → publications → research reports When ordering this report (free of charge), please mention title and number. Advisory Committee The authors gratefully acknowledge the members of the Advisory Committee for the valuable discussions and patience. Chair: Prof. dr. J.P.M. van Putten (Chair of the Medical Veterinary subcommittee of COGEM, Utrecht University) Members: Prof. dr. J.E. Degener (Member of the Medical Veterinary subcommittee of COGEM, University Medical Centre Groningen) Prof. dr. ir. J.D. van Elsas (Member of the Agriculture subcommittee of COGEM, University of Groningen) Dr. Lisette van der Knaap (COGEM-secretariat) Astrid Schulting (COGEM-secretariat) Disclaimer This report was commissioned by COGEM. The contents of this publication are the sole responsibility of the authors and may in no way be taken to represent the views of COGEM. Dit rapport is samengesteld in opdracht van de COGEM. De meningen die in het rapport worden weergegeven, zijn die van de auteurs en weerspiegelen niet noodzakelijkerwijs de mening van de COGEM. 2 | 24 Foreword COGEM advises the Dutch government on classifications of bacteria, and publishes listings of pathogenic and non-pathogenic bacteria that are updated regularly. These lists of bacteria originate from 2011, when COGEM petitioned a research project to evaluate the classifications of bacteria in the former GMO regulation and to supplement this list with bacteria that have been classified by other governmental organizations. -
How Is the Gut Microbiota Affected?
microorganisms Article Honeybees Exposure to Natural Feed Additives: How Is the Gut Microbiota Affected? Daniele Alberoni † , Loredana Baffoni * , Chiara Braglia † , Francesca Gaggìa and Diana Di Gioia Department of Agricultural and Food Sciences (DISTAL), University of Bologna, Viale Fanin 44, 40127 Bologna, Italy; [email protected] (D.A.); [email protected] (C.B.); [email protected] (F.G.); [email protected] (D.D.G.) * Correspondence: [email protected]; Tel.: +39-051-2096-269 † These authors contributed equally to this work. Abstract: The role of a balanced gut microbiota to maintain health and prevent diseases is largely established in humans and livestock. Conversely, in honeybees, studies on gut microbiota pertur- bations by external factors have started only recently. Natural methods alternative to chemical products to preserve honeybee health have been proposed, but their effect on the gut microbiota has not been examined in detail. This study aims to investigate the effect of the administration of a bacterial mixture of bifidobacteria and Lactobacillaceae and a commercial product HiveAliveTM on honeybee gut microbiota. The study was developed in 18 hives of about 2500 bees, with six replicates for each experimental condition for a total of three experimental groups. The absolute abundance of main microbial taxa was studied using qPCR and NGS. The results showed that the majority of the administered strains were detected in the gut. On the whole, great perturbations upon the administration of the bacterial mixture and the plant-based commercial product were not observed in the gut microbiota. Significant variations with respect to the untreated control were only observed TM Citation: Alberoni, D.; Baffoni, L.; for Snodgrassella sp. -
The Impact of Genome Variation and Diet on the Metabolic Phenotype
www.nature.com/scientificreports OPEN The impact of genome variation and diet on the metabolic phenotype and microbiome Received: 29 January 2018 Accepted: 5 April 2018 composition of Drosophila Published: xx xx xxxx melanogaster Lisa Jehrke1,2, Fiona A. Stewart1,2, Andrea Droste1,2 & Mathias Beller 1,2 The metabolic phenotype of an organism depends on a complex regulatory network, which integrates the plethora of intrinsic and external information and prioritizes the fow of nutrients accordingly. Given the rise of metabolic disorders including obesity, a detailed understanding of this regulatory network is in urgent need. Yet, our level of understanding is far from completeness and complicated by the discovery of additional layers in metabolic regulation, such as the impact of the microbial community present in the gut on the hosts’ energy storage levels. Here, we investigate the interplay between genome variation, diet and the gut microbiome in the shaping of a metabolic phenotype. For this purpose, we reared a set of fully sequenced wild type Drosophila melanogaster fies under basal and nutritionally challenged conditions and performed metabolic and microbiome profling experiments. Our results introduce the fy as a model system to investigate the impact of genome variation on the metabolic response to diet alterations and reveal candidate single nucleotide polymorphisms associated with diferent metabolic traits, as well as metabolite-metabolite and metabolite-microbe correlations. Intriguingly, the dietary changes afected the microbiome composition less than anticipated. These results challenge the current view of a rapidly changing microbiome in response to environmental fuctuations. Te metabolic phenotype of an organism depends on a multitude of internal and external parameters such as the genetic repertoire, stress levels, immune system activity, gut microbiome composition and the quality and caloric content of the diet.