Neural Tube Closure Requires the Endocytic Receptor Lrp2 and Its
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LRP2 Is Associated with Plasma Lipid Levels 311 Original Article
310 Journal of Atherosclerosis and Thrombosis Vol.14, No.6 LRP2 is Associated with Plasma Lipid Levels 311 Original Article Genetic Association of Low-Density Lipoprotein Receptor-Related Protein 2 (LRP2) with Plasma Lipid Levels Akiko Mii1, 2, Toshiaki Nakajima2, Yuko Fujita1, Yasuhiko Iino1, Kouhei Kamimura3, Hideaki Bujo4, Yasushi Saito5, Mitsuru Emi2, and Yasuo Katayama1 1Department of Internal Medicine, Divisions of Neurology, Nephrology, and Rheumatology, Nippon Medical School, Tokyo, Japan. 2Department of Molecular Biology-Institute of Gerontology, Nippon Medical School, Kawasaki, Japan. 3Awa Medical Association Hospital, Chiba, Japan. 4Department of Genome Research and Clinical Application, Graduate School of Medicine, Chiba University, Chiba, Japan. 5Department of Clinical Cell Biology, Graduate School of Medicine, Chiba University, Chiba, Japan. Aim: Not all genetic factors predisposing phenotypic features of dyslipidemia have been identified. We studied the association between the low density lipoprotein-related protein 2 gene (LRP2) and levels of plasma total cholesterol (T-Cho) and LDL-cholesterol (LDL-C) among 352 adults in Japan. Methods: Subjects were obtained from among participants in a cohort study that was carried out with health-check screening in an area of east-central Japan. We selected 352 individuals whose LDL-C levels were higher than 140 mg/dL from the initially screened 22,228 people. We assessed the relation between plasma cholesterol levels and single-nucleotide polymorphisms (SNPs) in the LRP2 gene. Results: -
Potential Microrna-Related Targets in Clearance Pathways of Amyloid-Β
Madadi et al. Cell Biosci (2019) 9:91 https://doi.org/10.1186/s13578-019-0354-3 Cell & Bioscience REVIEW Open Access Potential microRNA-related targets in clearance pathways of amyloid-β: novel therapeutic approach for the treatment of Alzheimer’s disease Soheil Madadi1, Heidi Schwarzenbach2, Massoud Saidijam3, Reza Mahjub4 and Meysam Soleimani1* Abstract Imbalance between amyloid-beta (Aβ) peptide synthesis and clearance results in Aβ deregulation. Failure to clear these peptides appears to cause the development of Alzheimer’s disease (AD). In recent years, microRNAs have become established key regulators of biological processes that relate among others to the development and progres- sion of neurodegenerative diseases, such as AD. This review article gives an overview on microRNAs that are involved in the Aβ cascade and discusses their inhibitory impact on their target mRNAs whose products participate in Aβ clear- ance. Understanding of the mechanism of microRNA in the associated signal pathways could identify novel therapeu- tic targets for the treatment of AD. Keywords: Ubiquitin–proteasome system, Autophagy, Aβ-degrading proteases, BBB transporters, Phagocytosis, Heat shock proteins, microRNAs Introduction stage, APP is cleaved to non-toxic proteins by α-secretase Alzheimer’s disease (AD)—the most common form of [6]. Aβ has two major forms: Aβ40 and Aβ42, which are dementia—is a devastating diagnosis that accounts for 40 and 42 amino acid-long fragments, respectively. Since 93,541 deaths in the United States in 2014 [1]. Clinical Aβ42 is more hydrophobic than Aβ40, it is more prone to manifestation of AD is often a loss of memory and cog- aggregate and scafold for oligomeric and fbrillar forms nitive skills. -
Supplementary Figures 1-14 and Supplementary References
SUPPORTING INFORMATION Spatial Cross-Talk Between Oxidative Stress and DNA Replication in Human Fibroblasts Marko Radulovic,1,2 Noor O Baqader,1 Kai Stoeber,3† and Jasminka Godovac-Zimmermann1* 1Division of Medicine, University College London, Center for Nephrology, Royal Free Campus, Rowland Hill Street, London, NW3 2PF, UK. 2Insitute of Oncology and Radiology, Pasterova 14, 11000 Belgrade, Serbia 3Research Department of Pathology and UCL Cancer Institute, Rockefeller Building, University College London, University Street, London WC1E 6JJ, UK †Present Address: Shionogi Europe, 33 Kingsway, Holborn, London WC2B 6UF, UK TABLE OF CONTENTS 1. Supplementary Figures 1-14 and Supplementary References. Figure S-1. Network and joint spatial razor plot for 18 enzymes of glycolysis and the pentose phosphate shunt. Figure S-2. Correlation of SILAC ratios between OXS and OAC for proteins assigned to the SAME class. Figure S-3. Overlap matrix (r = 1) for groups of CORUM complexes containing 19 proteins of the 49-set. Figure S-4. Joint spatial razor plots for the Nop56p complex and FIB-associated complex involved in ribosome biogenesis. Figure S-5. Analysis of the response of emerin nuclear envelope complexes to OXS and OAC. Figure S-6. Joint spatial razor plots for the CCT protein folding complex, ATP synthase and V-Type ATPase. Figure S-7. Joint spatial razor plots showing changes in subcellular abundance and compartmental distribution for proteins annotated by GO to nucleocytoplasmic transport (GO:0006913). Figure S-8. Joint spatial razor plots showing changes in subcellular abundance and compartmental distribution for proteins annotated to endocytosis (GO:0006897). Figure S-9. Joint spatial razor plots for 401-set proteins annotated by GO to small GTPase mediated signal transduction (GO:0007264) and/or GTPase activity (GO:0003924). -
Human Megalin/LRP2 Antibody
Human Megalin/LRP2 Antibody Monoclonal Mouse IgG1 Clone # 545606 Catalog Number: MAB9578 DESCRIPTION Species Reactivity Human Specificity Detects human Megalin/LRP2 in direct ELISAs. Source Monoclonal Mouse IgG1 Clone # 545606 Purification Protein A or G purified from ascites Immunogen Mouse myeloma cell line NS0derived recombinant human Megalin/LRP2 Pro3510Lys3964 Accession # P98164 Formulation Lyophilized from a 0.2 μm filtered solution in PBS with Trehalose. See Certificate of Analysis for details. *Small pack size (SP) is supplied either lyophilized or as a 0.2 μm filtered solution in PBS. APPLICATIONS Please Note: Optimal dilutions should be determined by each laboratory for each application. General Protocols are available in the Technical Information section on our website. Recommended Sample Concentration Flow Cytometry 0.25 µg/106 cells See Below Immunohistochemistry 525 µg/mL See Below CyTOFready Ready to be labeled using established conjugation methods. No BSA or other carrier proteins that could interfere with conjugation. DATA Flow Cytometry Immunohistochemistry Detection of Megalin/LRP2 in CaCo2 Megalin/LRP2 in Human Kidney. Human Cell Line by Flow Cytometry. Megalin/LRP2 was detected in immersion CaCo2 human cell line was stained with fixed paraffinembedded sections of human Mouse AntiHuman Megalin/LRP2 kidney using Mouse AntiHuman Monoclonal Antibody (Catalog # MAB9578, Megalin/LRP2 Monoclonal Antibody (Catalog filled histogram) or isotype control antibody # MAB9578) at 5 µg/mL for 1 hour at room (Catalog # MAB002, open histogram), temperature followed by incubation with the followed by Phycoerythrinconjugated Anti AntiMouse IgG VisUCyte™ HRP Polymer Mouse IgG Secondary Antibody (Catalog # Antibody (Catalog # VC001). -
Clusterin and LRP2 Are Critical Components of the Hypothalamic Feeding Regulatory Pathway
ARTICLE Received 21 Sep 2012 | Accepted 16 Apr 2013 | Published 14 May 2013 DOI: 10.1038/ncomms2896 Clusterin and LRP2 are critical components of the hypothalamic feeding regulatory pathway So Young Gil1, Byung-Soo Youn2, Kyunghee Byun3,4, Hu Huang5, Churl Namkoong1, Pil-Geum Jang1, Joo-Yong Lee1, Young-Hwan Jo6, Gil Myoung Kang1, Hyun-Kyong Kim1, Mi-Seon Shin7, Claus U. Pietrzik8, Bonghee Lee3,4, Young-Bum Kim3,5 & Min-Seon Kim1,7 Hypothalamic feeding circuits are essential for the maintenance of energy balance. There have been intensive efforts to discover new biological molecules involved in these pathways. Here we report that central administration of clusterin, also called apolipoprotein J, causes anorexia, weight loss and activation of hypothalamic signal transduction-activated transcript-3 in mice. In contrast, inhibition of hypothalamic clusterin action results in increased food intake and body weight, leading to adiposity. These effects are likely mediated through the mutual actions of the low-density lipoprotein receptor-related protein-2, a potential receptor for clusterin, and the long-form leptin receptor. In response to clusterin, the low-density lipoprotein receptor-related protein-2 binding to long-form leptin receptor is greatly enhanced in cultured neuronal cells. Furthermore, long-form leptin receptor deficiency or hypothalamic low-density lipoprotein receptor-related protein-2 suppression in mice leads to impaired hypothalamic clusterin signalling and actions. Our study identifies the hypotha- lamic clusterin–low-density lipoprotein receptor-related protein-2 axis as a novel anorexigenic signalling pathway that is tightly coupled with long-form leptin receptor-mediated signalling. 1 Asan Institute for Life Science, University of Ulsan College of Medicine, Seoul 138-736, Korea. -
APPL1 Associates with Trka and GIPC1 and Is Required for Nerve Growth Factor-Mediated Signal Transduction
University of Montana ScholarWorks at University of Montana Biomedical and Pharmaceutical Sciences Faculty Publications Biomedical and Pharmaceutical Sciences 12-2006 APPL1 Associates with TrkA and GIPC1 and is Required for Nerve Growth Factor-Mediated Signal Transduction D. C. Lin C. Quevedo N. E. Brewer A. Bell J. R. Testa See next page for additional authors Follow this and additional works at: https://scholarworks.umt.edu/biopharm_pubs Part of the Medical Sciences Commons, and the Pharmacy and Pharmaceutical Sciences Commons Let us know how access to this document benefits ou.y Recommended Citation Lin, D. C.; Quevedo, C.; Brewer, N. E.; Bell, A.; Testa, J. R.; Grimes, Mark L.; Miller, F. D.; and Kaplan, D. R., "APPL1 Associates with TrkA and GIPC1 and is Required for Nerve Growth Factor-Mediated Signal Transduction" (2006). Biomedical and Pharmaceutical Sciences Faculty Publications. 13. https://scholarworks.umt.edu/biopharm_pubs/13 This Article is brought to you for free and open access by the Biomedical and Pharmaceutical Sciences at ScholarWorks at University of Montana. It has been accepted for inclusion in Biomedical and Pharmaceutical Sciences Faculty Publications by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. Authors D. C. Lin, C. Quevedo, N. E. Brewer, A. Bell, J. R. Testa, Mark L. Grimes, F. D. Miller, and D. R. Kaplan This article is available at ScholarWorks at University of Montana: https://scholarworks.umt.edu/biopharm_pubs/13 MOLECULAR AND CELLULAR BIOLOGY, Dec. 2006, p. 8928–8941 Vol. 26, No. 23 0270-7306/06/$08.00ϩ0 doi:10.1128/MCB.00228-06 Copyright © 2006, American Society for Microbiology. -
Table S1. Identified Proteins with Exclusive Expression in Cerebellum of Rats of Control, 10Mg F/L and 50Mg F/L Groups
Table S1. Identified proteins with exclusive expression in cerebellum of rats of control, 10mg F/L and 50mg F/L groups. Accession PLGS Protein Name Group IDa Score Q3TXS7 26S proteasome non-ATPase regulatory subunit 1 435 Control Q9CQX8 28S ribosomal protein S36_ mitochondrial 197 Control P52760 2-iminobutanoate/2-iminopropanoate deaminase 315 Control Q60597 2-oxoglutarate dehydrogenase_ mitochondrial 67 Control P24815 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1 84 Control Q99L13 3-hydroxyisobutyrate dehydrogenase_ mitochondrial 114 Control P61922 4-aminobutyrate aminotransferase_ mitochondrial 470 Control P10852 4F2 cell-surface antigen heavy chain 220 Control Q8K010 5-oxoprolinase 197 Control P47955 60S acidic ribosomal protein P1 190 Control P70266 6-phosphofructo-2-kinase/fructose-2_6-bisphosphatase 1 113 Control Q8QZT1 Acetyl-CoA acetyltransferase_ mitochondrial 402 Control Q9R0Y5 Adenylate kinase isoenzyme 1 623 Control Q80TS3 Adhesion G protein-coupled receptor L3 59 Control B7ZCC9 Adhesion G-protein coupled receptor G4 139 Control Q6P5E6 ADP-ribosylation factor-binding protein GGA2 45 Control E9Q394 A-kinase anchor protein 13 60 Control Q80Y20 Alkylated DNA repair protein alkB homolog 8 111 Control P07758 Alpha-1-antitrypsin 1-1 78 Control P22599 Alpha-1-antitrypsin 1-2 78 Control Q00896 Alpha-1-antitrypsin 1-3 78 Control Q00897 Alpha-1-antitrypsin 1-4 78 Control P57780 Alpha-actinin-4 58 Control Q9QYC0 Alpha-adducin 270 Control Q9DB05 Alpha-soluble NSF attachment protein 156 Control Q6PAM1 Alpha-taxilin 161 -
Confirmation of Pathogenic Mechanisms by SARS-Cov-2–Host
Messina et al. Cell Death and Disease (2021) 12:788 https://doi.org/10.1038/s41419-021-03881-8 Cell Death & Disease ARTICLE Open Access Looking for pathways related to COVID-19: confirmation of pathogenic mechanisms by SARS-CoV-2–host interactome Francesco Messina 1, Emanuela Giombini1, Chiara Montaldo1, Ashish Arunkumar Sharma2, Antonio Zoccoli3, Rafick-Pierre Sekaly2, Franco Locatelli4, Alimuddin Zumla5, Markus Maeurer6,7, Maria R. Capobianchi1, Francesco Nicola Lauria1 and Giuseppe Ippolito 1 Abstract In the last months, many studies have clearly described several mechanisms of SARS-CoV-2 infection at cell and tissue level, but the mechanisms of interaction between host and SARS-CoV-2, determining the grade of COVID-19 severity, are still unknown. We provide a network analysis on protein–protein interactions (PPI) between viral and host proteins to better identify host biological responses, induced by both whole proteome of SARS-CoV-2 and specific viral proteins. A host-virus interactome was inferred, applying an explorative algorithm (Random Walk with Restart, RWR) triggered by 28 proteins of SARS-CoV-2. The analysis of PPI allowed to estimate the distribution of SARS-CoV-2 proteins in the host cell. Interactome built around one single viral protein allowed to define a different response, underlining as ORF8 and ORF3a modulated cardiovascular diseases and pro-inflammatory pathways, respectively. Finally, the network-based approach highlighted a possible direct action of ORF3a and NS7b to enhancing Bradykinin Storm. This network-based representation of SARS-CoV-2 infection could be a framework for pathogenic evaluation of specific 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; clinical outcomes. -
And Pancreatic Cancer: from the Role of Evs to the Interference with EV-Mediated Reciprocal Communication
biomedicines Review Extracellular Vesicles (EVs) and Pancreatic Cancer: From the Role of EVs to the Interference with EV-Mediated Reciprocal Communication 1, 1, 1 1 1 Sokviseth Moeng y, Seung Wan Son y, Jong Sun Lee , Han Yeoung Lee , Tae Hee Kim , Soo Young Choi 1, Hyo Jeong Kuh 2 and Jong Kook Park 1,* 1 Department of Biomedical Science and Research Institute for Bioscience & Biotechnology, Hallym University, Chunchon 24252, Korea; [email protected] (S.M.); [email protected] (S.W.S.); [email protected] (J.S.L.); [email protected] (H.Y.L.); [email protected] (T.H.K.); [email protected] (S.Y.C.) 2 Department of Medical Life Sciences, College of Medicine, The Catholic University of Korea, Seoul 06591, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-33-248-2114 These authors contributed equally. y Received: 29 June 2020; Accepted: 1 August 2020; Published: 3 August 2020 Abstract: Pancreatic cancer is malignant and the seventh leading cause of cancer-related deaths worldwide. However, chemotherapy and radiotherapy are—at most—moderately effective, indicating the need for new and different kinds of therapies to manage this disease. It has been proposed that the biologic properties of pancreatic cancer cells are finely tuned by the dynamic microenvironment, which includes extracellular matrix, cancer-associated cells, and diverse immune cells. Accumulating evidence has demonstrated that extracellular vesicles (EVs) play an essential role in communication between heterogeneous subpopulations of cells by transmitting multiplex biomolecules. EV-mediated cell–cell communication ultimately contributes to several aspects of pancreatic cancer, such as growth, angiogenesis, metastasis and therapeutic resistance. -
Plasma Proteomic Analysis Reveals Altered Protein Abundances In
Lygirou et al. J Transl Med (2018) 16:104 https://doi.org/10.1186/s12967-018-1476-9 Journal of Translational Medicine RESEARCH Open Access Plasma proteomic analysis reveals altered protein abundances in cardiovascular disease Vasiliki Lygirou1 , Agnieszka Latosinska2, Manousos Makridakis1, William Mullen3, Christian Delles3, Joost P. Schanstra4,5, Jerome Zoidakis1, Burkert Pieske6, Harald Mischak2 and Antonia Vlahou1* Abstract Background: Cardiovascular disease (CVD) describes the pathological conditions of the heart and blood vessels. Despite the large number of studies on CVD and its etiology, its key modulators remain largely unknown. To this end, we performed a comprehensive proteomic analysis of blood plasma, with the scope to identify disease-associated changes after placing them in the context of existing knowledge, and generate a well characterized dataset for fur- ther use in CVD multi-omics integrative analysis. Methods: LC–MS/MS was employed to analyze plasma from 32 subjects (19 cases of various CVD phenotypes and 13 controls) in two steps: discovery (13 cases and 8 controls) and test (6 cases and 5 controls) set analysis. Follow- ing label-free quantifcation, the detected proteins were correlated to existing plasma proteomics datasets (plasma proteome database; PPD) and functionally annotated (Cytoscape, Ingenuity Pathway Analysis). Diferential expression was defned based on identifcation confdence ( 2 peptides per protein), statistical signifcance (Mann–Whitney p value 0.05) and a minimum of twofold change.≥ ≤ Results: Peptides detected in at least 50% of samples per group were considered, resulting in a total of 3796 identi- fed proteins (838 proteins based on 2 peptides). Pathway annotation confrmed the functional relevance of the fndings (representation of complement≥ cascade, fbrin clot formation, platelet degranulation, etc.). -
Integrin Traffic – the Update
ß 2015. Published by The Company of Biologists Ltd | Journal of Cell Science (2015) 128, 839–852 doi:10.1242/jcs.161653 COMMENTARY Integrin traffic – the update Nicola De Franceschi*, Hellyeh Hamidi*, Jonna Alanko*, Pranshu Sahgal and Johanna Ivaska` ABSTRACT thus integrin signalling, by tightly controlling specific integrin heterodimer availability at the cell surface. With increasing interest Integrins are a family of transmembrane cell surface molecules that on the biological relevance of integrin traffic, the number of constitute the principal adhesion receptors for the extracellular matrix adaptor and signalling proteins and cellular machineries identified (ECM) and are indispensable for the existence of multicellular as key regulators of this pathway is rapidly expanding and thus organisms. In vertebrates, 24 different integrin heterodimers exist reveals the complexity of integrin traffic regulation and the close with differing substrate specificity and tissue expression. Integrin– connection with the cytoskeletal and signalling apparatus of a cell. extracellular-ligand interaction provides a physical anchor for the cell Importantly, conceptual progress in the field has identified well- and triggers a vast array of intracellular signalling events that known cancer oncogenes and mutations as being crucial regulators determine cell fate. Dynamic remodelling of adhesions, through rapid of integrin traffic and, therefore, cell invasion and metastasis. endocytic and exocytic trafficking of integrin receptors, is an Mounting data highlights how integrin trafficking is deeply wired important mechanism employed by cells to regulate integrin–ECM into the cytoskeletal and signalling apparatus of a cell and how interactions, and thus cellular signalling, during processes such as integrin trafficking is tightly and spatially regulated in the cell. -
A New Role for LRP2 in Forebrain Development
A new role for LRP2 in forebrain development DISSERTATION zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) im Fach Biologie eingereicht an der Mathematisch-Naturwissenschaftlichen Fakult¨atI Humboldt-Universit¨atzu Berlin von Herr Dipl.-Biol. (technisch orientiert) Uwe Anzenberger geboren am 22.03.1976 in Singen a. Htwl. Pr¨asident der Humboldt-Universit¨atzu Berlin: Prof. Dr. Christoph Markschies Dekan der Mathematisch-Naturwissenschaftlichen Fakult¨atI: Prof. Thomas Buckhout, Phd Gutachter: 1. Prof. Dr. Thomas Willnow 2. Prof. Dr. Michael Bader 3. Prof. Dr. Wolfgang Lockau Tag der m¨undlichen Pr¨ufung: 22. September 2006 Abstract LRP2 is a member of the low-density lipoprotein receptor gene family that is mainly expressed in the yolk sac and in the neuroepithelium of the early embryo. Deficiency for this 600 kDa protein in mice results in holoprosencephaly, indicating an important yet unknown role for LRP2 in forebrain development. In this study, mice with a complete or a conditional loss of lrp2 function were used to further elucidate the consequences of the lack of LRP2 expression. This study shows that the presence of LRP2 in the neuroepithelium but not in the yolk sac is crucial for early forebrain development. Lack of the receptor resulted in an increase of Bone morphogenic protein (Bmp) 4 signaling in the rostral telencephalon at E9.5. As a consequence, sonic hedgehog (shh) expression at E10.5 was lost completely in a ventral region of the telencephalon termed anterior entopeduncular area (AEP). The absence of Shh activity in this area subsequently led to the loss of ventrally induced oligodendroglial and interneuronal cell populations in lrp2 deficient mice.