Are Changes in Lower Trophic Levels Limiting Prey-Fish Biomass and Production in Lake Michigan?
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Atlas of the Copepods (Class Crustacea: Subclass Copepoda: Orders Calanoida, Cyclopoida, and Harpacticoida)
Taxonomic Atlas of the Copepods (Class Crustacea: Subclass Copepoda: Orders Calanoida, Cyclopoida, and Harpacticoida) Recorded at the Old Woman Creek National Estuarine Research Reserve and State Nature Preserve, Ohio by Jakob A. Boehler and Kenneth A. Krieger National Center for Water Quality Research Heidelberg University Tiffin, Ohio, USA 44883 August 2012 Atlas of the Copepods, (Class Crustacea: Subclass Copepoda) Recorded at the Old Woman Creek National Estuarine Research Reserve and State Nature Preserve, Ohio Acknowledgments The authors are grateful for the funding for this project provided by Dr. David Klarer, Old Woman Creek National Estuarine Research Reserve. We appreciate the critical reviews of a draft of this atlas provided by David Klarer and Dr. Janet Reid. This work was funded under contract to Heidelberg University by the Ohio Department of Natural Resources. This publication was supported in part by Grant Number H50/CCH524266 from the Centers for Disease Control and Prevention. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of Centers for Disease Control and Prevention. The Old Woman Creek National Estuarine Research Reserve in Ohio is part of the National Estuarine Research Reserve System (NERRS), established by Section 315 of the Coastal Zone Management Act, as amended. Additional information about the system can be obtained from the Estuarine Reserves Division, Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration, U.S. Department of Commerce, 1305 East West Highway – N/ORM5, Silver Spring, MD 20910. Financial support for this publication was provided by a grant under the Federal Coastal Zone Management Act, administered by the Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration, Silver Spring, MD. -
Factors Affecting the Distribution and Abundance of an Invasive Freshwater Mysid
Factors affecting the distribution and abundance of an invasive freshwater mysid Suncica Avlijas Biology Department McGill University, Montreal December 2012 A thesis submitted to McGill University in partial fulfilment of the requirements of the degree of Master of Science in Biology © Suncica Avlijas 2012 Abstract The freshwater shrimp Hemimysis anomala is a recent Ponto-Caspian invader of the Great Lakes – St. Lawrence River basin. Based on its invasion history, high predation rate and the naiveté of the ecosystems in which it has been introduced, it has the potential to exert strong impacts on native food webs. Risk assessment and effective monitoring of the spread of this invader require information about the environmental factors that limit its local abundance and distribution. A literature review suggests that H. anomala has broad environmental tolerances but may be limited by low water conductivity levels, high local flow, and low dissolved oxygen. An empirical model derived from results of a field study in the St. Lawrence River identified specific conductivity and shoreline heterogeneity as important predictors of H. anomala occurrence and abundance across sites. The relationship between conductivity and H. anomala occurrence is further supported by experimental evidence that demonstrates lower functional responses at lower conductivity levels. Distance from shore and depth were also good predictors of H. anomala abundance, which was maximal in areas close to shore and at depths above 2 m. i Résumé La crevette d’eau douce Hemimysis anomala est une espèce envahissante provenant de la région Ponto-Caspienne qui a été découverte récemment dans le bassin des Grands Lacs et du fleuve Saint-Laurent. -
A Revised Key to the Zooplankton of Lake Champlain
Plattsburgh State University of New York Volume 6 (2013) A Revised Key to the Zooplankton of Lake Champlain Mark LaMay, Erin Hayes-Pontius, Ian M. Ater, Timothy B. Mihuc (faculty) Lake Champlain Research Institute, SUNY Plattsburgh, Plattsburgh, NY 12901 ABSTRACT This key was developed by undergraduate research students working on a project with NYDEC and the Lake Champlain Monitoring program to develop long-term data sets for Lake Champlain plankton. Funding for development of this key was provided by, the Lake Champlain Basin Program and the New York Department of Environmental Conservation (NYDEC). The key contains couplet keys for the major taxa in Cladocera and Copepoda and Rotifer plankton in Lake Champlain. Illustrations are by Erin Hayes-Pontius and Ian Ater. Many thanks to the employees of the Lake Champlain Research Institute for hours of excellent work in the field and in the lab: especially Casey Bingelli, Heather Bradley, Amanda Groves and Carrianne Pershyn. Keywords: Lake Champlain; zooplankton; identification; key INTRODUCTION Lake Champlain is one of the largest freshwater bodies in the United States. The Lake Champlain drainage basin is bordered by the Adirondack Mountains of New York to the west and the Green Mountains of Vermont to the east. This unique ecosystem has a surface area of 1130 km2, a length of 200 km and a mean depth of 19.4 m. The lake shoreline extends from Quebec in the north, 200 km south to Whitehall, New York, where it connects to the Hudson-Champlain canal. Islands and man-made transport causeways divide the lake into several distinct parts: Main Lake, South Lake, and Northeast Arm including Missisquoi Bay, and Malletts Bay. -
Seasonal Zooplankton Dynamics in Lake Michigan
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Publications, Agencies and Staff of the U.S. Department of Commerce U.S. Department of Commerce 2012 Seasonal zooplankton dynamics in Lake Michigan: Disentangling impacts of resource limitation, ecosystem engineering, and predation during a critical ecosystem transition Henry A. Vanderploeg National Oceanic and Atmospheric Administration, [email protected] Steven A. Pothoven Great Lakes Environmental Research Laboratory, [email protected] Gary L. Fahnenstiel Great Lakes Environmental Research Laboratory, [email protected] Joann F. Cavaletto National Oceanic and Atmospheric Administration, [email protected] James R. Liebig National Oceanic and Atmospheric Administration, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/usdeptcommercepub Part of the Environmental Sciences Commons Vanderploeg, Henry A.; Pothoven, Steven A.; Fahnenstiel, Gary L.; Cavaletto, Joann F.; Liebig, James R.; Stow, Craig A.; Nalepa, Thomas F.; Madenjian, Charles P.; and Bunnell, David B., "Seasonal zooplankton dynamics in Lake Michigan: Disentangling impacts of resource limitation, ecosystem engineering, and predation during a critical ecosystem transition" (2012). Publications, Agencies and Staff of the U.S. Department of Commerce. 406. https://digitalcommons.unl.edu/usdeptcommercepub/406 This Article is brought to you for free and open access by the U.S. Department of Commerce at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications, Agencies and Staff of the U.S. Department of Commerce by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Henry A. Vanderploeg, Steven A. Pothoven, Gary L. Fahnenstiel, Joann F. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Under-Ice Availability of Phytoplankton Lipids Is Key to Freshwater
www.nature.com/scientificreports OPEN Under-ice availability of phytoplankton lipids is key to freshwater zooplankton winter Received: 22 February 2017 Accepted: 16 August 2017 survival Published: xx xx xxxx Guillaume Grosbois 1, Heather Mariash1,2, Tobias Schneider1 & Milla Rautio1 Shortening winter ice-cover duration in lakes highlights an urgent need for research focused on under- ice ecosystem dynamics and their contributions to whole-ecosystem processes. Low temperature, reduced light and consequent changes in autotrophic and heterotrophic resources alter the diet for long-lived consumers, with consequences on their metabolism in winter. We show in a survival experiment that the copepod Leptodiaptomus minutus in a boreal lake does not survive five months under the ice without food. We then report seasonal changes in phytoplankton, terrestrial and bacterial fatty acid (FA) biomarkers in seston and in four zooplankton species for an entire year. Phytoplankton FA were highly available in seston (2.6 µg L−1) throughout the first month under the ice. Copepods accumulated them in high quantities (44.8 µg mg dry weight−1), building lipid reserves that comprised up to 76% of body mass. Terrestrial and bacterial FA were accumulated only in low quantities (<2.5 µg mg dry weight−1). The results highlight the importance of algal FA reserve accumulation for winter survival as a key ecological process in the annual life cycle of the freshwater plankton community with likely consequences to the overall annual production of aquatic FA for higher trophic levels and ultimately for human consumption. Winter is the most unexplored season in ecology and has often been portrayed as a dormant period for aquatic organisms especially if the ecosystem is ice-covered1. -
INTERACTIONS BETWEEN LAKE TROUT and BULL TROUT in the PRIEST LAKE SYSTEM, IDAHO Derek C
Eastern Washington University EWU Digital Commons EWU Masters Thesis Collection Student Research and Creative Works Spring 2017 INTERACTIONS BETWEEN LAKE TROUT AND BULL TROUT IN THE PRIEST LAKE SYSTEM, IDAHO Derek C. Entz Eastern Washington University Follow this and additional works at: http://dc.ewu.edu/theses Part of the Biology Commons Recommended Citation Entz, Derek C., "INTERACTIONS BETWEEN LAKE TROUT AND BULL TROUT IN THE PRIEST LAKE SYSTEM, IDAHO" (2017). EWU Masters Thesis Collection. 457. http://dc.ewu.edu/theses/457 This Thesis is brought to you for free and open access by the Student Research and Creative Works at EWU Digital Commons. It has been accepted for inclusion in EWU Masters Thesis Collection by an authorized administrator of EWU Digital Commons. For more information, please contact [email protected]. INTERACTIONS BETWEEN LAKE TROUT AND BULL TROUT IN THE PRIEST LAKE SYSTEM, IDAHO ________________________________________________________________________ A Thesis Presented To Eastern Washington University Cheney, Washington ________________________________________________________________________ In Partial Fulfillment of the Requirements for the Degree Master of Science ________________________________________________________________________ By Derek C. Entz Spring 2017 ii THESIS OF DEREK C. ENTZ APPROVED BY __________________________________________ DATE______ Paul Spruell, GRADUATE STUDY COMMITTEE __________________________________________ DATE______ Margaret O’Connell, GRADUATE STUDY COMMITTEE __________________________________________ -
Evaluating the Efficacy of Environmental DNA (Edna)
Evaluating the efficacy of environmental DNA (eDNA) as an early detection tool for the Mohawk Watershed’s newest aquatic invader, the bloody-red shrimp, Hemimysis anomala. Sonomi Oyagi1, Brent T. Boscarino1, Meghan E. Brown2, Michael Tibbetts3 1Poughkeepsie Day School, 260 Boardman Road, Poughkeepsie, NY 12603 2 Hobart and William Smith Colleges, 300 Pulteney Street, Geneva, NY 14456 3Bard College, 30 Campus Road, Annandale-on-Hudson, NY 12504 Invasion history The bloody-red shrimp Hemimysis anomala (hereafter BRS) is a recent Ponto-Caspian aquatic invasive species that was first reported in 2006 in Lakes Ontario and Michigan (Pothoven et al, 2007; Walsh et al, 2012) and has now become firmly established in the Great Lakes, St. Lawrence River and other inland lakes of New York, including Oneida, Cayuga and Seneca Lakes (Brown et al., 2014). Our research team most recently discovered multiple reproducing populations of BRS in the Erie Canal and Mohawk River as far east as Waterford, NY (Brown et al., 2014; Boscarino, unpubl.), These results strongly indicate that the Erie Canal and Mohawk River are serving as major vectors of spread for this species towards the Hudson River. Importance of early detection in the case of BRS This project seeks to develop an effective early detection method for BRS as they continue their expansion throughout the Hudson-Mohawk River watershed. Early detection is critical for management success and to limit the cost of control measures (Anderson, 2005; Vander Zanden, 2010). Efforts to detect non-native species in the early stages of an invasion are often hindered by inadequate sampling methods that are often cost-ineffective or simply ineffective at low densities. -
Standard Operating Procedure for Mysid Analysis
Standard Operating Procedure for Mysid Analysis LG408 Revision 01, February 2015 Table of Contents Section Number Subject Page 1.0……….SCOPE AND APPLICATION………………………………………………………………. 1 2.0……….SUMMARY OF METHOD…………………………………………………….……………. 1 3.0……….SAMPLE COLLECTION AND PRESERVATION………………………….……………. 1 4.0……….APPARATUS…………………………………………………………………………………. 1 5.0……….REAGENTS……………………………………………………………………..……………. 1 6.0……….ANALYTICAL PROCEDURE – MYSID SAMPLE ANALYSIS…………..…………….. 2 7.0……….CALCULATION OF MYSID BIOMASS…………………………………….…………….. 7 8.0……….CALCULATIONS AND REPORTING…………………………………………………….. 7 9.0……….QUALITY CONTROL AUDITS AND METHODS PRECISION………….…..………… 9 10.0……...SAFETY AND WASTE DISPOSAL………………………………………….…………….. 10 11.0……...REFERENCES……………………………………………………………………………….. 10 FIGURES…………………………………………………………………………………...…………….. 12 APPENDIX 1: FORMS………………………………………………………………………………….. 20 Disclaimer: Mention of trade names or commercial products does not constitute endorsement or recommendation of use. Standard Operating Procedure for Mysid Analysis 1.0 SCOPE AND APPLICATION 1.1 This standard operating procedure is used to identify, sex, enumerate, and measure the mysid populations from the Great Lakes. 2.0 SUMMARY OF METHOD 2.1 The method involves macroscopic and microscopic examination of mysid samples. The entire sample is examined for mysids by eye in a sorting tray. Up to 100 mysids are photographed for digital measurement. Marsupia of female mysids are examined under a stereoscopic microscope for number and stage of brood. Gravid females may have been separated -
Lake Champlain Long-Term Water Quality and Biological Monitoring Program
Lake Champlain Long-Term Water Quality and Biological Monitoring Program Summary of Program Activities During 2020 March 15, 2021 Prepared by: Vermont Department of Environmental Conservation Watershed Management Division 1 National Life Drive, Davis 3 Montpelier, VT 05620-3522 New York State Department of Environmental Conservation Region 5 P.O. Box 296 Ray Brook, NY 12977-0296 Lake Champlain Research Institute SUNY Plattsburgh-Hudson 136D 101 Broad Street Plattsburgh, NY 12901 Submitted to: Lake Champlain Basin Program P.O. Box 204 54 West Shore Rd. Grand Isle, VT 05458 Purpose of Report The workplan for the Lake Champlain Long-Term Water Quality and Biological Monitoring Program approved by the Lake Champlain Basin Program specifies the following annual reporting requirements: An annual report will consist of a summary of the history and purpose of the (program), description of the sampling network, summary of field sampling and analytical methods, parameter listings, and data tables. The purposes of this annual report will be achieved by maintaining an up-to-date Program Description document, graphical presentations of the data, and an interactive database, including statistical summaries, on the project website…… In addition, the quarterly report produced in April each year will provide a summary of program accomplishments for the calendar year just ended, including the number of samples obtained and analyzed at each site by parameter. The Program Description document, interactive access to the project data, and graphical and statistical summaries of the data are available on the program webpage. The purpose of this report is to provide a summary of sampling activities and other accomplishments during 2020. -
Distribution of Mysis Diluviana in Nearshore Lake Ontario Sean J
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Winter 2012 Distribution of Mysis diluviana in nearshore Lake Ontario Sean J. Maxwell University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Maxwell, Sean J., "Distribution of Mysis diluviana in nearshore Lake Ontario" (2012). Master's Theses and Capstones. 763. https://scholars.unh.edu/thesis/763 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. DISTRIBUTION OF MYSIS DILUVIANA IN NEARSHORE LAKE ONTARIO BY SEAN J. MAXWELL B.S., University of New Hampshire, 2003 THESIS Submitted to the University of New Hampshire In Partial Fulfillment of The Requirements for the Degree of Master of Science In Zoology December, 2012 UMI Number: 1522319 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. ttswwioft FtoMsh«i UMI 1522319 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. -
Calibration of the Multi-Gene Metabarcoding Approach As an Efficient and Accurate Biomonitoring Tool
Calibration of the multi-gene metabarcoding approach as an efficient and accurate biomonitoring tool Guang Kun Zhang Department of Biology McGill University, Montréal April 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Master of Science © Guang Kun Zhang 2017 1 TABLE OF CONTENTS Abstract .................................................................................................................. 3 Résumé .................................................................................................................... 4 Acknowledgements ................................................................................................ 5 Contributions of Authors ...................................................................................... 6 General Introduction ............................................................................................. 7 References ..................................................................................................... 9 Manuscript: Towards accurate species detection: calibrating metabarcoding methods based on multiplexing multiple markers.................................................. 13 References ....................................................................................................32 Tables ...........................................................................................................41 Figures ........................................................................................................