Unconventional Support for a Raptorial Niche Division Between Australaves
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AOU Classification Committee – North and Middle America
AOU Classification Committee – North and Middle America Proposal Set 2016-C No. Page Title 01 02 Change the English name of Alauda arvensis to Eurasian Skylark 02 06 Recognize Lilian’s Meadowlark Sturnella lilianae as a separate species from S. magna 03 20 Change the English name of Euplectes franciscanus to Northern Red Bishop 04 25 Transfer Sandhill Crane Grus canadensis to Antigone 05 29 Add Rufous-necked Wood-Rail Aramides axillaris to the U.S. list 06 31 Revise our higher-level linear sequence as follows: (a) Move Strigiformes to precede Trogoniformes; (b) Move Accipitriformes to precede Strigiformes; (c) Move Gaviiformes to precede Procellariiformes; (d) Move Eurypygiformes and Phaethontiformes to precede Gaviiformes; (e) Reverse the linear sequence of Podicipediformes and Phoenicopteriformes; (f) Move Pterocliformes and Columbiformes to follow Podicipediformes; (g) Move Cuculiformes, Caprimulgiformes, and Apodiformes to follow Columbiformes; and (h) Move Charadriiformes and Gruiformes to precede Eurypygiformes 07 45 Transfer Neocrex to Mustelirallus 08 48 (a) Split Ardenna from Puffinus, and (b) Revise the linear sequence of species of Ardenna 09 51 Separate Cathartiformes from Accipitriformes 10 58 Recognize Colibri cyanotus as a separate species from C. thalassinus 11 61 Change the English name “Brush-Finch” to “Brushfinch” 12 62 Change the English name of Ramphastos ambiguus 13 63 Split Plain Wren Cantorchilus modestus into three species 14 71 Recognize the genus Cercomacroides (Thamnophilidae) 15 74 Split Oceanodroma cheimomnestes and O. socorroensis from Leach’s Storm- Petrel O. leucorhoa 2016-C-1 N&MA Classification Committee p. 453 Change the English name of Alauda arvensis to Eurasian Skylark There are a dizzying number of larks (Alaudidae) worldwide and a first-time visitor to Africa or Mongolia might confront 10 or more species across several genera. -
Leptosomiformes ~ Trogoniformes ~ Bucerotiformes ~ Piciformes
Birds of the World part 6 Afroaves The core landbirds originating in Africa TELLURAVES: AFROAVES – core landbirds originating in Africa (8 orders) • ORDER ACCIPITRIFORMES – hawks and allies (4 families, 265 species) – Family Cathartidae – New World vultures (7 species) – Family Sagittariidae – secretarybird (1 species) – Family Pandionidae – ospreys (2 species) – Family Accipitridae – kites, hawks, and eagles (255 species) • ORDER STRIGIFORMES – owls (2 families, 241 species) – Family Tytonidae – barn owls (19 species) – Family Strigidae – owls (222 species) • ORDER COLIIFORMES (1 family, 6 species) – Family Coliidae – mousebirds (6 species) • ORDER LEPTOSOMIFORMES (1 family, 1 species) – Family Leptosomidae – cuckoo-roller (1 species) • ORDER TROGONIFORMES (1 family, 43 species) – Family Trogonidae – trogons (43 species) • ORDER BUCEROTIFORMES – hornbills and hoopoes (4 families, 74 species) – Family Upupidae – hoopoes (4 species) – Family Phoeniculidae – wood hoopoes (9 species) – Family Bucorvidae – ground hornbills (2 species) – Family Bucerotidae – hornbills (59 species) • ORDER PICIFORMES – woodpeckers and allies (9 families, 443 species) – Family Galbulidae – jacamars (18 species) – Family Bucconidae – puffbirds (37 species) – Family Capitonidae – New World barbets (15 species) – Family Semnornithidae – toucan barbets (2 species) – Family Ramphastidae – toucans (46 species) – Family Megalaimidae – Asian barbets (32 species) – Family Lybiidae – African barbets (42 species) – Family Indicatoridae – honeyguides (17 species) – Family -
Verbalizing Phylogenomic Conflict: Representation of Node Congruence Across Competing Reconstructions of the Neoavian Explosion
bioRxiv preprint doi: https://doi.org/10.1101/233973; this version posted December 14, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Tempe, December 12, 2017 RESEARCH ARTICLE (1st submission) Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion Nico M. Franz1*, Lukas J. Musher2, Joseph W. Brown3, Shizhuo Yu4, Bertram Ludäscher5 1 School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America 2 Richard Gilder Graduate School and Department of Ornithology, American Museum of Natural History, New York, New York, United States of America 3 Department of Animal and Plant Sciences, University of Sheffield, Sheffield, United Kingdom 4 Department of Computer Science, University of California at Davis, Davis, California, United States of America 5 School of Information Sciences, University of Illinois at Urbana-Champaign, Champaign, Illinois, United States of America * Corresponding author E-mail: [email protected] Short title: Verbalizing phylogenomic conflict Abstract Phylogenomic research is accelerating the publication of landmark studies that aim to resolve deep divergences of major organismal groups. Meanwhile, systems for identifying and integrating the novel products of phylogenomic inference – such as newly supported clade concepts – have not kept pace. However, the ability to verbalize both node concept congruence and conflict across multiple, (in effect) simultaneously endorsed phylogenomic hypotheses, is a critical prerequisite for building synthetic data environments for biological systematics, thereby also benefitting other domains impacted by these (conflicting) inferences. -
Characterization of the Complete Mitochondrial Genome of Cavisoma Magnum (Southwell, 1927) (Acanthocephala Palaeacanthocephala)
Infection, Genetics and Evolution 80 (2020) 104173 Contents lists available at ScienceDirect Infection, Genetics and Evolution journal homepage: www.elsevier.com/locate/meegid Research paper Characterization of the complete mitochondrial genome of Cavisoma T magnum (Southwell, 1927) (Acanthocephala: Palaeacanthocephala), first representative of the family Cavisomidae, and its phylogenetic implications ⁎ Nehaz Muhammada, Liang Lib, , Sulemana, Qing Zhaob, Majid A. Bannaic, Essa T. Mohammadc, ⁎ Mian Sayed Khand, Xing-Quan Zhua,e, Jun Maa, a State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China b Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology of Hebei Province, College of Life Sciences, Hebei Normal University, 050024 Shijiazhuang, Hebei Province, PR China c Marine Vertebrate, Marine Science Center, University of Basrah, Basrah, Iraq d Department of Zoology, University of Swabi, Swabi, Khyber Pakhtunkhwa, Pakistan e Jiangsu Co-innovation Centre for the Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University College of Veterinary Medicine, Yangzhou, Jiangsu Province 225009, PR China ARTICLE INFO ABSTRACT Keywords: The phylum Acanthocephala is a small group of endoparasites occurring in the alimentary canal of all major Acanthocephala lineages of vertebrates worldwide. In the present study, the complete mitochondrial (mt) genome of Cavisoma Echinorhynchida magnum (Southwell, 1927) (Palaeacanthocephala: Echinorhynchida) was determined and annotated, the re- Cavisomidae presentative of the family Cavisomidae with the characterization of the complete mt genome firstly decoded. The Mitochondrial genome mt genome of this acanthocephalan is 13,594 bp in length, containing 36 genes plus two non-coding regions. -
Data Types and the Phylogeny of Neoaves
Article Data Types and the Phylogeny of Neoaves Edward L. Braun * and Rebecca T. Kimball * Department of Biology, University of Florida, Gainesville, FL 32611, USA * Correspondence: ebraun68@ufl.edu (E.L.B.); rkimball@ufl.edu (R.T.K.) Simple Summary: Some of the earliest studies using molecular data to resolve evolutionary history separated birds into three main groups: Paleognathae (ostriches and allies), Galloanseres (ducks and chickens), and Neoaves (the remaining ~95% of avian species). The early evolution of Neoaves, however, has remained challenging to understand, even as data from whole genomes have become available. We have recently proposed that some of the conflicts among recent studies may be due to the type of genomic data that is analyzed (regions that code for proteins versus regions that do not). However, a rigorous examination of this hypothesis using coding and non-coding data from the same genomic regions sequenced from a relatively large number of species has not yet been conducted. Here we perform such an analysis and show that data type does influence the methods used to infer evolutionary relationships from molecular sequences. We also show that conducting analyses using models of sequence evolution that were chosen to minimize reconstruction errors result in coding and non-coding trees that are much more similar, and we add to the evidence that non-coding data provide better information regarding neoavian relationships. While a few relationships remain problematic, we are approaching a good understanding of the evolutionary history for major avian groups. Abstract: The phylogeny of Neoaves, the largest clade of extant birds, has remained unclear despite intense study. -
Whole-Genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds Erich D
AFLOCKOFGENOMES 90. J. F. Storz, J. C. Opazo, F. G. Hoffmann, Mol. Phylogenet. Evol. RESEARCH ARTICLE 66, 469–478 (2013). 91. F. G. Hoffmann, J. F. Storz, T. A. Gorr, J. C. Opazo, Mol. Biol. Evol. 27, 1126–1138 (2010). Whole-genome analyses resolve ACKNOWLEDGMENTS Genome assemblies and annotations of avian genomes in this study are available on the avian phylogenomics website early branches in the tree of life (http://phybirds.genomics.org.cn), GigaDB (http://dx.doi.org/ 10.5524/101000), National Center for Biotechnology Information (NCBI), and ENSEMBL (NCBI and Ensembl accession numbers of modern birds are provided in table S2). The majority of this study was supported by an internal funding from BGI. In addition, G.Z. was 1 2 3 4,5,6 7 supported by a Marie Curie International Incoming Fellowship Erich D. Jarvis, *† Siavash Mirarab, * Andre J. Aberer, Bo Li, Peter Houde, grant (300837); M.T.P.G. was supported by a Danish National Cai Li,4,6 Simon Y. W. Ho,8 Brant C. Faircloth,9,10 Benoit Nabholz,11 Research Foundation grant (DNRF94) and a Lundbeck Foundation Jason T. Howard,1 Alexander Suh,12 Claudia C. Weber,12 Rute R. da Fonseca,6 grant (R52-A5062); C.L. and Q.L. were partially supported by a 4 4 4 4 7,13 14 Danish Council for Independent Research Grant (10-081390); Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, and E.D.J. was supported by the Howard Hughes Medical Institute Ganesh Ganapathy,1 Bastien Boussau,15 Md. -
Survey of Southern Amazonian Bird Helminths Kaylyn Patitucci
University of North Dakota UND Scholarly Commons Theses and Dissertations Theses, Dissertations, and Senior Projects January 2015 Survey Of Southern Amazonian Bird Helminths Kaylyn Patitucci Follow this and additional works at: https://commons.und.edu/theses Recommended Citation Patitucci, Kaylyn, "Survey Of Southern Amazonian Bird Helminths" (2015). Theses and Dissertations. 1945. https://commons.und.edu/theses/1945 This Thesis is brought to you for free and open access by the Theses, Dissertations, and Senior Projects at UND Scholarly Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of UND Scholarly Commons. For more information, please contact [email protected]. SURVEY OF SOUTHERN AMAZONIAN BIRD HELMINTHS by Kaylyn Fay Patitucci Bachelor of Science, Washington State University 2013 Master of Science, University of North Dakota 2015 A Thesis Submitted to the Graduate Faculty of the University of North Dakota in partial fulfillment of the requirements for the degree of Master of Science Grand Forks, North Dakota December 2015 This thesis, submitted by Kaylyn F. Patitucci in partial fulfillment of the requirements for the Degree of Master of Science from the University of North Dakota, has been read by the Faculty Advisory Committee under whom the work has been done and is hereby approved. __________________________________________ Dr. Vasyl Tkach __________________________________________ Dr. Robert Newman __________________________________________ Dr. Jefferson Vaughan -
Parasites Chilean Variable Hawk
ISSN 1984-2961 (Electronic) www.cbpv.org.br/rbpv Braz. J. Vet. Parasitol., Jaboticabal, Ahead of Print, 2019 Doi: https://doi.org/10.1590/S1984-29612019045 Gastrointestinal and external parasites of the Variable hawk Geranoaetus polyosoma (Accipitriformes: Accipitridae) in Chile Parasitas gastrointestinais e externos do Falcão Variável Geranoaetus polyosoma (Accipitriformes: Accipitridae) de Chile Alexandra Grandón-Ojeda1; Patricio Cortés1; Lucila Moreno2; John Mike Kinsella3; Armando Cicchino4; Carlos Barrientos5; Daniel González-Acuña1 1 Laboratorio de Enfermedades y Parásitos de Fauna silvestre, Facultad de Ciencias Veterinarias, Universidad de Concepción, Chillán, Chile 2 Facultad de Ciencias Naturales y Oceanográfcas, Universidad de Concepción, Concepción, Chile 3 Helm West Lab, Missoula, Montana, United States of America 4 Universidad Nacional de Mar del Plata, Mar del Plata, Argentina 5 Escuela de Medicina Veterinaria, Universidad Santo Tomás, Concepción, Chile Received February 7, 2019 Accepted May 5, 2019 Abstract Information about parasites associated with diurnal raptors from Chile is scarce. Between 2006 and 2017, a total of 15 specimens of the Variable hawk, Geranoaetus polyosoma (Quoy & Gaimard, 1824) were collected, 14 of them from diferent localities in the Biobío region and one specimen from the Valparaíso region. An external examination of the plumage was made to collect ectoparasites, and necropsies were performed, focusing primarily on the gastrointestinal tract. Chewing lice (Phthiraptera) were found on fve (33.3%) of the birds corresponding to three species: 97 specimens of Degeeriella fulva (Giebel, 1874), six specimens of Colpocephalum turbinatum Denny, 1842 and nine belonging to an unidentifed species of the genus Craspedorrhynchus Kéler, 1938. Endoparasites found in three (20%) of the birds included round worms (Nematoda) of the genus Procyrnea Chabaud, 1958, and spiny-headed worms (Acanthocephala) of the genus Centrorhynchus Lühe, 1911. -
Avian Genomics : Fledging Into the Wild!
Erschienen in: Journal of Ornithology ; 156 (2015), 4. - S. 851-865 https://dx.doi.org/10.1007/s10336-015-1253-y Avian genomics: fledging into the wild! Robert H. S. Kraus1,2 • Michael Wink3 Abstract Next generation sequencing (NGS) technolo- Zusammenfassung gies provide great resources to study bird evolution and avian functional genomics. They also allow for the iden- Die Ornithologie ist im Zeitalter der Genomik ange- tification of suitable high-resolution markers for detailed kommen analyses of the phylogeography of a species or the con- nectivity of migrating birds between breeding and winter- Neue Sequenziertechnologien (Next Generation Sequen- ing populations. This review discusses the application of cing; NGS) ero¨ffnen die Mo¨glichkeit, Evolution und DNA markers for the study of systematics and phylogeny, funktionelle Genomik bei Vo¨geln umfassend zu untersu- but also population genetics and phylogeography. chen. Weiterhin erlaubt die NGS-Technologie, geeignete, Emphasis in this review is on the new methodology of hochauflo¨sende Markersysteme fu¨r Mikrosatelliten und NGS and its use to study avian genomics. The recent Single Nucleotide Polymorphisms (SNPs) zu identifizieren, publication of the first phylogenomic tree of birds based on um detaillierte Analysen zur Phylogeographie einer Art genome data of 48 bird taxa from 34 orders is presented in oder zur Konnektivita¨t von Zugvo¨geln zwischen Brut- und more detail. Winterpopulationen durchzufu¨hren. Dieses Review widmet sich der Anwendung von DNA Markern fu¨r die Erfor- Keywords Next generation sequencing Á Genetics Á schung von Systematik und Phylogenie sowie Populati- Ornithology Á Whole genome Á Phylogenomics Á Single onsgenetik und Phylogeographie. -
Description and Molecular Analysis of an Italian Population of Centrorhynchus Globo Caudatus (Zeder, 1800) Lühe, 1911 (Acanthoc
Journal of Helminthology Description and molecular analysis of an Italian population of Centrorhynchus globo caudatus cambridge.org/jhl (Zeder, 1800) Lühe, 1911 (Acanthocephala: Centrorhynchidae) from Falco tinnunculus Research Paper (Falconidae) and Buteo buteo (Accipitridae) Cite this article: Amin OM, Heckmann RA, Dallarés S, Constenla M, Rubini S (2020). 1 2 3 3 4 Description and molecular analysis of an O.M. Amin , R.A. Heckmann , S. Dallarés , M. Constenla and S. Rubini Italian population of Centrorhynchus globo caudatus (Zeder, 1800) Lühe, 1911 1Institute of Parasitic Diseases, 11445 E Via Linda 2-419, Scottsdale, Arizona 85259, USA; 2Department of Biology, (Acanthocephala: Centrorhynchidae) from Brigham Young University, 1114 MLBM, Provo, Utah 84602, USA; 3Department of Animal Biology, Vegetal Biology Falco tinnunculus (Falconidae) and Buteo and Ecology, Universitat Autònoma de Barcelona, Cerdanyola, 08193 Barcelona, Spain and 4Experimental buteo (Accipitridae). Journal of Helminthology Zooprophylactic Institute of Ferrara, St Modena 483, 44124 Cassana, Ferrara, Italy 94, e207, 1–21. https://doi.org/10.1017/ S0022149X20000887 Abstract Received: 6 August 2020 Accepted: 22 September 2020 Centrorhynchus globocaudatus (Zeder, 1800) Lühe, 1911 (Centrorhynchidae) was reported in birds of prey. Our population from Falco tinnunculus Linnaeus (Falconidae) and Buteo buteo Key words: Linnaeus (Accipitridae) in northern Italy was morphologically distinct from others described Acanthocephala; Centrorhynchus elsewhere. The worms are elongate and cylindrical. Proboscis long, apically truncated and globocaudatus; redescription; Italy; Falco; Buteo; new features; molecular profile bare, with wider base and variably faint constriction at point of attachment of receptacle. Large anterior hooks well rooted; posterior spiniform hooks with reduced roots; transitional Author for correspondence: hooks with scutiform roots in-between. -
Journal and Proceedings of the Royal Society of New South Wales
Journal and Proceedings of the Royal Society of New South Wales 2017 Volume 150 Part 2 Numbers 465 & 466 “... for the encouragement of studies and investigations in Science Art Literature and Philosophy ...” THE ROYAL SOCIETY OF NEW SOUTH WALES OFFICE BEARERS FOR 2017 Patron His Excellency General The Honourable David Hurley AC DSC (Ret’d) Governor of New South Wales President Em. Prof. David Brynn Hibbert BSc PhD CChem FRSC FRACI FRSN Vice Presidents Dr Donald Hector AM BE(Chem) PhD FIChemE FIEAust FAICD FRSN Prof. Ian Sloan AO PhD FAA FRSN Ms Judith Wheeldon AM BS (Wis) MEd (Syd) FACE FRSN Hon. Secretary (Ed.) Em. Prof. Robert Marks MEngSci ResCert PhD (Stan) FRSN Hon. Secretary (Gen.) Dr Herma Büttner Dr.rer.nat FRSN Hon. Treasurer Mr Richard Wilmott Hon. Librarian Dr Ragbir Bhathal PhD FSAAS Hon. Web Master A/Prof. Chris Bertram PhD FRSN Councillors Dr Erik W. Aslaksen MSc (ETH) PhD FRSN Dr Mohammad Choucair PhD Em. Prof. Robert Clancy PhD FRACP FRSN Dr Desmond Griffin AM PhD FRSN Mr John Hardie BSc (Syd) FGS MACE FRSN Em. Prof. Stephen Hill AM PhD FTSE FRSN Em. Prof. Heinrich Hora DipPhys Dr.rer.nat DSc FAIP FInstP CPhys FRSN Prof. E James Kehoe PhD FRSN Prof. Bruce Milthorpe PhD FRSN Hon. Prof. Ian Wilkinson PhD FRSN Southern Highlands Ms Anne Wood FRSN Branch Representative Executive Office The Association Specialists EDITORIAL BOARD Em. Prof. Robert Marks BE MEngSci ResCert MS PhD (Stan) FRSN – Hon. Editor Prof. Richard Banati MD PhD FRSN Prof. Michael Burton BA MA MMaths (Cantab) PhD (Edinb) FASA FAIP FRSN Dr Donald Hector AM BE(Chem) PhD (Syd) FIChemE FIEAust FAICD PRSN Em. -
Gastrointestinal and External Parasites of the Variable
Original Article ISSN 1984-2961 (Electronic) www.cbpv.org.br/rbpv Braz. J. Vet. Parasitol., Jaboticabal, v. 28, n. 3, p. 376-382, july.-sept. 2019 Doi: https://doi.org/10.1590/S1984-29612019045 Gastrointestinal and external parasites of the Variable hawk Geranoaetus polyosoma (Accipitriformes: Accipitridae) in Chile Parasitas gastrointestinais e externos do Falcão Variável Geranoaetus polyosoma (Accipitriformes: Accipitridae) de Chile Alexandra Grandón-Ojeda1; Patricio Cortés1; Lucila Moreno2; John Mike Kinsella3; Armando Cicchino4; Carlos Barrientos5; Daniel González-Acuña1 1 Laboratorio de Enfermedades y Parásitos de Fauna silvestre, Facultad de Ciencias Veterinarias, Universidad de Concepción, Chillán, Chile 2 Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile 3 Helm West Lab, Missoula, Montana, United States of America 4 Universidad Nacional de Mar del Plata, Mar del Plata, Argentina 5 Escuela de Medicina Veterinaria, Universidad Santo Tomás, Concepción, Chile Received February 7, 2019 Accepted May 5, 2019 Abstract Information about parasites associated with diurnal raptors from Chile is scarce. Between 2006 and 2017, a total of 15 specimens of the Variable hawk, Geranoaetus polyosoma (Quoy & Gaimard, 1824) were collected, 14 of them from different localities in the Biobío region and one specimen from the Valparaíso region. An external examination of the plumage was made to collect ectoparasites, and necropsies were performed, focusing primarily on the gastrointestinal tract. Chewing lice (Phthiraptera) were found on five (33.3%) of the birds corresponding to three species: 97 specimens of Degeeriella fulva (Giebel, 1874), six specimens of Colpocephalum turbinatum Denny, 1842 and nine belonging to an unidentified species of the genusCraspedorrhynchus Kéler, 1938. Endoparasites found in three (20%) of the birds included round worms (Nematoda) of the genus Procyrnea Chabaud, 1958, and spiny-headed worms (Acanthocephala) of the genus Centrorhynchus Lühe, 1911.