Plant Evolution
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The Chloroplast Rpl23 Gene Cluster of Spirogyra Maxima (Charophyceae) Shares Many Similarities with the Angiosperm Rpl23 Operon
Algae Volume 17(1): 59-68, 2002 The Chloroplast rpl23 Gene Cluster of Spirogyra maxima (Charophyceae) Shares Many Similarities with the Angiosperm rpl23 Operon Jungho Lee* and James R. Manhart Department of Biology, Texas A&M University, College Station, TX, 77843-3258, U.S.A. A phylogenetic affinity between charophytes and embryophytes (land plants) has been explained by a few chloro- plast genomic characters including gene and intron (Manhart and Palmer 1990; Baldauf et al. 1990; Lew and Manhart 1993). Here we show that a charophyte, Spirogyra maxima, has the largest operon of angiosperm chloroplast genomes, rpl23 operon (trnI-rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-infA-rpl36-rps11-rpoA) containing both embryophyte introns, rpl16.i and rpl2.i. The rpl23 gene cluster of Spirogyra contains a distinct eubacterial promoter sequence upstream of rpl23, which is the first gene of the green algal rpl23 gene cluster. This sequence is completely absent in angiosperms but is present in non-flowering plants. The results imply that, in the rpl23 gene cluster, early charophytes had at least two promoters, one upstream of trnI and another upstream of rpl23, which partially or completely lost its function in land plants. A comparison of gene clusters of prokaryotes, algal chloroplast DNAs and land plant cpDNAs indicated a loss of numerous genes in chlorophyll a+b eukaryotes. A phylogenetic analysis using presence/absence of genes and introns as characters produced trees with a strongly supported clade contain- ing chlorophyll a+b eukaryotes. Spirogyra and embryophytes formed a clade characterized by the loss of rpl5 and rps9 and the gain of trnI (CAU) and introns in rpl2 and rpl16. -
New Paleobotanical Data on the Portuguese Pennsylvanian (Douro Carboniferous Basin, NW Portugal)
Versão online: http://www.lneg.pt/iedt/unidades/16/paginas/26/30/185 Comunicações Geológicas (2014) 101, Especial I, 409-414 IX CNG/2º CoGePLiP, Porto 2014 ISSN: 0873-948X; e-ISSN: 1647-581X New paleobotanical data on the Portuguese Pennsylvanian (Douro Carboniferous Basin, NW Portugal) Novos dados paleobotânicos do Pensilvaniano português (Bacia Carbonífera do Douro, NW Portugal) P. Correia1*, Z. Šimůnek2, J. Pšenička3, A. A. Sá4,5, R. Domingos6, A. Carneiro7, D. Flores1,7 Artigo Curto Short Article © 2014 LNEG – Laboratório Nacional de Geologia e Energia IP Abstract: This paper describes nine new macrofloral taxa from 1. Introduction Douro Carboniferous Basin (lower Gzhelian) of Portugal. The plant assemblage is mainly composed by pteridophylls (Sphenopteriss The fossil flora of Carboniferous of Portugal is still little arberi Kidston, Sphenopteris fayoli Zeiller, Sphenopteris tenuis known. The new megafloral occurrences recently found in Schenk, Odontopteris schlotheimii Brongniart), sphenopsids the Upper Pennsylvanian strata of Douro Carboniferous (Annularia spicata Gutbier, Stellotheca robusta (Feistmantel) Basin (DCB) provide new and important data about Surange and Prakash, Calamostachys grandis Zeiller (Jongmans) and Calamostachys calathifera Sterzel) besides the gymnosperm paleobotanical richness and diversity of the Paleozoic Cordaites foliolatus Grand`Eury. The new data provide a better floras of Portugal offering more information to previous understating of the knowledge of Late Carboniferous floras of researches reported from diverse localities and by different Portugal, showing the high plant diversity of Gzhelian floras, when authors (e.g. Wenceslau de Lima, Bernardino António considerable changes in paleogeography and climate dynamics are Gomes, Carlos Ribeiro, Carríngton da Costa, Carlos evidenced in Euramerican floristic assemblages. -
Chapter 2 Paleozoic Stratigraphy of the Grand Canyon
CHAPTER 2 PALEOZOIC STRATIGRAPHY OF THE GRAND CANYON PAIGE KERCHER INTRODUCTION The Paleozoic Era of the Phanerozoic Eon is defined as the time between 542 and 251 million years before the present (ICS 2010). The Paleozoic Era began with the evolution of most major animal phyla present today, sparked by the novel adaptation of skeletal hard parts. Organisms continued to diversify throughout the Paleozoic into increasingly adaptive and complex life forms, including the first vertebrates, terrestrial plants and animals, forests and seed plants, reptiles, and flying insects. Vast coal swamps covered much of mid- to low-latitude continental environments in the late Paleozoic as the supercontinent Pangaea began to amalgamate. The hardiest taxa survived the multiple global glaciations and mass extinctions that have come to define major time boundaries of this era. Paleozoic North America existed primarily at mid to low latitudes and experienced multiple major orogenies and continental collisions. For much of the Paleozoic, North America’s southwestern margin ran through Nevada and Arizona – California did not yet exist (Appendix B). The flat-lying Paleozoic rocks of the Grand Canyon, though incomplete, form a record of a continental margin repeatedly inundated and vacated by shallow seas (Appendix A). IMPORTANT STRATIGRAPHIC PRINCIPLES AND CONCEPTS • Principle of Original Horizontality – In most cases, depositional processes produce flat-lying sedimentary layers. Notable exceptions include blanketing ash sheets, and cross-stratification developed on sloped surfaces. • Principle of Superposition – In an undisturbed sequence, older strata lie below younger strata; a package of sedimentary layers youngs upward. • Principle of Lateral Continuity – A layer of sediment extends laterally in all directions until it naturally pinches out or abuts the walls of its confining basin. -
Plant Evolution an Introduction to the History of Life
Plant Evolution An Introduction to the History of Life KARL J. NIKLAS The University of Chicago Press Chicago and London CONTENTS Preface vii Introduction 1 1 Origins and Early Events 29 2 The Invasion of Land and Air 93 3 Population Genetics, Adaptation, and Evolution 153 4 Development and Evolution 217 5 Speciation and Microevolution 271 6 Macroevolution 325 7 The Evolution of Multicellularity 377 8 Biophysics and Evolution 431 9 Ecology and Evolution 483 Glossary 537 Index 547 v Introduction The unpredictable and the predetermined unfold together to make everything the way it is. It’s how nature creates itself, on every scale, the snowflake and the snowstorm. — TOM STOPPARD, Arcadia, Act 1, Scene 4 (1993) Much has been written about evolution from the perspective of the history and biology of animals, but significantly less has been writ- ten about the evolutionary biology of plants. Zoocentricism in the biological literature is understandable to some extent because we are after all animals and not plants and because our self- interest is not entirely egotistical, since no biologist can deny the fact that animals have played significant and important roles as the actors on the stage of evolution come and go. The nearly romantic fascination with di- nosaurs and what caused their extinction is understandable, even though we should be equally fascinated with the monarchs of the Carboniferous, the tree lycopods and calamites, and with what caused their extinction (fig. 0.1). Yet, it must be understood that plants are as fascinating as animals, and that they are just as important to the study of biology in general and to understanding evolutionary theory in particular. -
Construct a Plant Evolution Timeline
Constructing a Timeline of Plant Evolution Use this photo as a guide to creating an interactive timeline. Refer to Geologic Time Scale charts. A good resource is http://www.ucmp.berkeley.edu/help/timeform.php Use the “Plant Timeline Cards” found at the end of this document. Attach pictures with Velcro to allow for manipulation by students, and to “build” the timeline in increments. Teachers will need to find and print photos for “seed ferns” or omit that step in the timeline. Cut and paste the text below under each picture. Cyanobacteria: Also known as blue- Mosses: These have the first identifiable green algae, these are bacteria transport systems for water (xylem), and (prokaryotes – no nucleus) that can reproduce via spores, which encase sex photosynthesize. cells to prevent desiccation. They still need to live near water. First eukaryotes (cell nucleus): Scientist think that eukaryotes evolved via Hornworts: These developed the cuticle symbiosis, with one bacteria engulfing (waxy coating to prevent water loss) and another, but not digesting it. stomata (openings in the cuticle to allow Chloroplasts were originally for gas exchange.) All land plants except cyanobacteria engulfed by another liverworts have these two features. bacterium. Development of a true vascular system Anabaena: These water organisms allowed for better transport of water evolved from being unicellular to more and provided structural support for the complex, multicellular organisms. Their plant to grow taller. specialized cells help with nitrogen fixation. Club mosses: These were the first plants to have true leaves with veins. They also Stoneworts: Scientists think that developed roots as an anchoring system colonization of land occurred only once, to allow plant to grow taller. -
The Big Bloom—How Flowering Plants Changed the World
The Big Bloom—How Flowering Plants Changed the World Written by Michael Klesius Republished from the pages of National Geographic magazine -- July 2002 In the summer of 1973 sunflowers appeared in my father's vegetable garden. They seemed to sprout overnight in a few rows he had lent that year to new neighbors from California. Only six years old at the time, I was at first put off by these garish plants. Such strange and vibrant flowers seemed out of place among the respectable beans, peppers, spinach, and other vegetables we had always grown. Gradually, however, the brilliance of the sunflowers won me over. Their fiery halos relieved the green monotone that by late summer ruled the garden. I marveled at birds that clung upside down to the shaggy, gold disks, wings fluttering, looting the seeds. Sunflowers defined flowers for me that summer and changed my view of the world. Flowers have a way of doing that. They began changing the way the world looked almost as soon as they appeared on Earth about 130 million years ago, during the Cretaceous period. That's relatively recent in geologic time: If all Earth's history were compressed into an hour, flowering plants would exist for only the last 90 seconds. But once they took firm root about 100 million years ago, they swiftly diversified in an explosion of varieties that established most of the flowering plant families of the modern world. Today flowering plant species outnumber by twenty to one those of ferns and cone-bearing trees, or conifers, which had thrived for 200 million years before the first bloom appeared. -
Ordovician Land Plants and Fungi from Douglas Dam, Tennessee
PROOF The Palaeobotanist 68(2019): 1–33 The Palaeobotanist 68(2019): xxx–xxx 0031–0174/2019 0031–0174/2019 Ordovician land plants and fungi from Douglas Dam, Tennessee GREGORY J. RETALLACK Department of Earth Sciences, University of Oregon, Eugene, OR 97403, USA. *Email: gregr@uoregon. edu (Received 09 September, 2019; revised version accepted 15 December, 2019) ABSTRACT The Palaeobotanist 68(1–2): Retallack GJ 2019. Ordovician land plants and fungi from Douglas Dam, Tennessee. The Palaeobotanist 68(1–2): xxx–xxx. 1–33. Ordovician land plants have long been suspected from indirect evidence of fossil spores, plant fragments, carbon isotopic studies, and paleosols, but now can be visualized from plant compressions in a Middle Ordovician (Darriwilian or 460 Ma) sinkhole at Douglas Dam, Tennessee, U. S. A. Five bryophyte clades and two fungal clades are represented: hornwort (Casterlorum crispum, new form genus and species), liverwort (Cestites mirabilis Caster & Brooks), balloonwort (Janegraya sibylla, new form genus and species), peat moss (Dollyphyton boucotii, new form genus and species), harsh moss (Edwardsiphyton ovatum, new form genus and species), endomycorrhiza (Palaeoglomus strotheri, new species) and lichen (Prototaxites honeggeri, new species). The Douglas Dam Lagerstätte is a benchmark assemblage of early plants and fungi on land. Ordovician plant diversity now supports the idea that life on land had increased terrestrial weathering to induce the Great Ordovician Biodiversification Event in the sea and latest Ordovician (Hirnantian) -
Seed Plant Phylogeny: Demise of the Anthophyte Hypothesis? Michael J
bb10c06.qxd 02/29/2000 04:18 Page R106 R106 Dispatch Seed plant phylogeny: Demise of the anthophyte hypothesis? Michael J. Donoghue* and James A. Doyle† Recent molecular phylogenetic studies indicate, The first suggestions that Gnetales are related to surprisingly, that Gnetales are related to conifers, or angiosperms were based on several obvious morphological even derived from them, and that no other extant seed similarities — vessels in the wood, net-veined leaves in plants are closely related to angiosperms. Are these Gnetum, and reproductive organs made up of simple, results believable? Is this a clash between molecules unisexual, flower-like structures, which some considered and morphology? evolutionary precursors of the flowers of wind-pollinated Amentiferae, but others viewed as being reduced from Addresses: *Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138, USA. †Section of Evolution and more complex flowers in the common ancestor of Ecology, University of California, Davis, California 95616, USA. angiosperms, Gnetales and Mesozoic Bennettitales [1]. E-mail: [email protected] These ideas went into eclipse with evidence that simple [email protected] flowers really are a derived, rather than primitive, feature Current Biology 2000, 10:R106–R109 of the Amentiferae, and that vessels arose independently in angiosperms and Gnetales. Vessels in angiosperms 0960-9822/00/$ – see front matter seem derived from tracheids with scalariform pits, whereas © 2000 Elsevier Science Ltd. All rights reserved. in Gnetales they resemble tracheids with circular bor- dered pits, as in conifers. Gnetales are also like conifers in These are exciting times for those interested in plant lacking scalariform pitting in the primary xylem, and in evolution. -
Curitiba, Southern Brazil
data Data Descriptor Herbarium of the Pontifical Catholic University of Paraná (HUCP), Curitiba, Southern Brazil Rodrigo A. Kersten 1,*, João A. M. Salesbram 2 and Luiz A. Acra 3 1 Pontifical Catholic University of Paraná, School of Life Sciences, Curitiba 80.215-901, Brazil 2 REFLORA Project, Curitiba, Brazil; [email protected] 3 Pontifical Catholic University of Paraná, School of Life Sciences, Curitiba 80.215-901, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-41-3721-2392 Academic Editor: Martin M. Gossner Received: 22 November 2016; Accepted: 5 February 2017; Published: 10 February 2017 Abstract: The main objective of this paper is to present the herbarium of the Pontifical Catholic University of Parana’s and its collection. The history of the HUCP had its beginning in the middle of the 1970s with the foundation of the Biology Museum that gathered both botanical and zoological specimens. In April 1979 collections were separated and the HUCP was founded with preserved specimens of algae (green, red, and brown), fungi, and embryophytes. As of October 2016, the collection encompasses nearly 25,000 specimens from 4934 species, 1609 genera, and 297 families. Most of the specimens comes from the state of Paraná but there were also specimens from many Brazilian states and other countries, mainly from South America (Chile, Argentina, Uruguay, Paraguay, and Colombia) but also from other parts of the world (Cuba, USA, Spain, Germany, China, and Australia). Our collection includes 42 fungi, 258 gymnosperms, 299 bryophytes, 2809 pteridophytes, 3158 algae, 17,832 angiosperms, and only one type of Mimosa (Mimosa tucumensis Barneby ex Ribas, M. -
Evolution of the Female Conifer Cone Fossils, Morphology and Phylogenetics
DEPARTMENT OF BIOLOGICAL AND ENVIRONMENTAL SCIENCES EVOLUTION OF THE FEMALE CONIFER CONE FOSSILS, MORPHOLOGY AND PHYLOGENETICS Daniel Bäck Degree project for Bachelor of Science with a major in Biology BIO602, Biologi: Examensarbete – kandidatexamen, 15 hp First cycle Semester/year: Spring 2020 Supervisor: Åslög Dahl, Department of Biological and Environmental Sciences Examiner: Claes Persson, Department of Biological and Environmental Sciences Front page: Abies koreana (immature seed cones), Gothenburg Botanical Garden, Sweden Table of contents 1 Abstract ............................................................................................................................... 2 2 Introduction ......................................................................................................................... 3 2.1 Brief history of Florin’s research ............................................................................... 3 2.2 Progress in conifer phylogenetics .............................................................................. 4 3 Aims .................................................................................................................................... 4 4 Materials and Methods ........................................................................................................ 4 4.1 Literature: ................................................................................................................... 4 4.2 RStudio: ..................................................................................................................... -
A Comparative Study of the Primary Vascular System Of
ArneI'. J. Bot. 5.5(4): 447-457. 1968. A COMPARATIVE STUDY OF THE PRIMARY VASCULAR SYSTElVI OF CONIFERS. 1. GENERA WITH HELICAL PHYLLOTAXISl KADAMBARI K. N AMBOODIRI2 AND CHARLES B. BECK Department of Botany, University of Michigan, Ann Arbor ABSTRACT The primary vascular system of 23 species belonging to 18 genera of conifers with helical phyllotaxis has been investigated with the intent of determining the architecture .f the system. Special attention has been given to nodal and subnodal relations of the vascular bundles. The vascular system seems to be composed solely of relatively discrete sympodia, that is, axial vascu lar bundles from which leaf traces branch unilaterally. Although the discreteness of the syrn podia is not immediately apparent because of their undulation and lateral contacts with neigh boring ones, close examination, including a statistical analysis of the tangential contacts, seems to reveal that each sympodium maintains its identity throughout. Although two traces may be apparent at nodal levels, the trace supply to a leaf originates, in all species, as a single bundle. An analysis is made of the relationship between the vasculature and the phyllotaxis. It is ob served that the direction of trace divergence can be accurately predicted when the direction of the ontogenetic spiral, the angle of divergence of leaf traces, and the number of syrnpodia are known. THE ORIGIN and evolution of gymnosperms that of the ferns by reduction (Jeffrey, 1902, are significant problems that deserve increased 1917). Consequently, he considered the leaf gap attention. There have been few modern compara of seed plants to be homologous with that of tive studies of extant gymnosperms, and most the ferns. -
The Paleohistory of California Oaks1
1 The Paleohistory of California Oaks 2 Scott Mensing Abstract Oak woodlands are a fixture of California geography, yet as recently as 10,000 years ago oaks were only a minor element in the landscape. The first fossil evidence for California’s oaks is in the early Miocene (~20 million years ago) when oaks were present across the west, intermixed with deciduous trees typical of eastern North America. As climate became drier, species dependent upon summer precipitation went locally extinct and oaks retreated west of the Sierra Nevada. During the Pleistocene (the last 2 million years) oak abundance declined during cool glacial periods and expanded during warm interglacials. After the last glacial maximum (~18,000 years ago), oaks expanded rapidly to become the dominant trees in the Coast Ranges, Sierra Nevada foothills, and Peninsular Ranges. During the Holocene (the last 10,000 years) oaks in the Sierra Nevada were most abundant during a warm dry period between 8000 and 6000 years ago. Native American use of fire to manipulate plants for food, basketry, tools, and other uses helped maintain oak woodlands and reduce expansion of conifers where these forest types overlapped. Fire suppression, initiated by the Spanish and reinforced during the American period has allowed oak woodland density to increase in some areas in the Coast Range, but has decreased oaks where pines are dominant. Extensive cutting of oaks has reduced their populations throughout much of the state. Key words: California, oak woodlands, paleoecology, Quercus, vegetation history Introduction Oak woodlands characterize much of the California landscape, but widespread oak communities are of relatively recent origin in the state.