Red Lists: Plant Conservation Assessments and the Role of Botanic Gardens
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Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Oaks (Quercus Spp.): a Brief History
Publication WSFNR-20-25A April 2020 Oaks (Quercus spp.): A Brief History Dr. Kim D. Coder, Professor of Tree Biology & Health Care / University Hill Fellow University of Georgia Warnell School of Forestry & Natural Resources Quercus (oak) is the largest tree genus in temperate and sub-tropical areas of the Northern Hemisphere with an extensive distribution. (Denk et.al. 2010) Oaks are the most dominant trees of North America both in species number and biomass. (Hipp et.al. 2018) The three North America oak groups (white, red / black, and golden-cup) represent roughly 60% (~255) of the ~435 species within the Quercus genus worldwide. (Hipp et.al. 2018; McVay et.al. 2017a) Oak group development over time helped determine current species, and can suggest relationships which foster hybridization. The red / black and white oaks developed during a warm phase in global climate at high latitudes in what today is the boreal forest zone. From this northern location, both oak groups spread together southward across the continent splitting into a large eastern United States pathway, and much smaller western and far western paths. Both species groups spread into the eastern United States, then southward, and continued into Mexico and Central America as far as Columbia. (Hipp et.al. 2018) Today, Mexico is considered the world center of oak diversity. (Hipp et.al. 2018) Figure 1 shows genus, sub-genus and sections of Quercus (oak). History of Oak Species Groups Oaks developed under much different climates and environments than today. By examining how oaks developed and diversified into small, closely related groups, the native set of Georgia oak species can be better appreciated and understood in how they are related, share gene sets, or hybridize. -
Reporton the Rare Plants of Puerto Rico
REPORTON THE RARE PLANTS OF PUERTO RICO tii:>. CENTER FOR PLANT CONSERVATION ~ Missouri Botanical Garden St. Louis, Missouri July 15, l' 992 ACKNOWLEDGMENTS The Center for Plant Conservation would like to acknowledge the John D. and Catherine T. MacArthur Foundation and the W. Alton Jones Foundation for their generous support of the Center's work in the priority region of Puerto Rico. We would also like to thank all the participants in the task force meetings, without whose information this report would not be possible. Cover: Zanthoxy7um thomasianum is known from several sites in Puerto Rico and the U.S . Virgin Islands. It is a small shrub (2-3 meters) that grows on the banks of cliffs. Threats to this taxon include development, seed consumption by insects, and road erosion. The seeds are difficult to germinate, but Fairchild Tropical Garden in Miami has plants growing as part of the Center for Plant Conservation's .National Collection of Endangered Plants. (Drawing taken from USFWS 1987 Draft Recovery Plan.) REPORT ON THE RARE PLANTS OF PUERTO RICO TABLE OF CONTENTS Acknowledgements A. Summary 8. All Puerto Rico\Virgin Islands Species of Conservation Concern Explanation of Attached Lists C. Puerto Rico\Virgin Islands [A] and [8] species D. Blank Taxon Questionnaire E. Data Sources for Puerto Rico\Virgin Islands [A] and [B] species F. Pue~to Rico\Virgin Islands Task Force Invitees G. Reviewers of Puerto Rico\Virgin Islands [A] and [8] Species REPORT ON THE RARE PLANTS OF PUERTO RICO SUMMARY The Center for Plant Conservation (Center) has held two meetings of the Puerto Rlco\Virgin Islands Task Force in Puerto Rico. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
BIOLOGY and HOST SPECIFICITY of Tectococcus
BIOLOGY AND HOST SPECIFICITY OF Tectococcus ovatus (HEMIPTERA: ERIOCOCCIDAE), A POTENTIAL BIOLOGICAL CONTROL AGENT OF THE INVASIVE STRAWBERRY GUAVA, Psidium cattleianum (MYRTACEAE), IN FLORIDA By FRANCIS JAMES WESSELS IV A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2005 Copyright 2005 by Frank J. Wessels This document is dedicated to my parents, for their support and generosity throughout my educational career. Without them, this work would not have been possible. ACKNOWLEDGMENTS I would like to thank my major professor Dr. James P. Cuda for his invaluable guidance and help throughout my degree program. I also thank my other committee members, Dr. Kenneth A. Langeland and Dr. William A. Overholt, for their comments and suggestions on my research and this manuscript. iv TABLE OF CONTENTS page ACKNOWLEDGMENTS ................................................................................................. iv LIST OF TABLES............................................................................................................ vii LIST OF FIGURES ......................................................................................................... viii ABSTRACT....................................................................................................................... ix CHAPTER 1 INTRODUCTION ........................................................................................................1 -
Biogeography and Diversification of Brassicales
Molecular Phylogenetics and Evolution 99 (2016) 204–224 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Biogeography and diversification of Brassicales: A 103 million year tale ⇑ Warren M. Cardinal-McTeague a,1, Kenneth J. Sytsma b, Jocelyn C. Hall a, a Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada b Department of Botany, University of Wisconsin, Madison, WI 53706, USA article info abstract Article history: Brassicales is a diverse order perhaps most famous because it houses Brassicaceae and, its premier mem- Received 22 July 2015 ber, Arabidopsis thaliana. This widely distributed and species-rich lineage has been overlooked as a Revised 24 February 2016 promising system to investigate patterns of disjunct distributions and diversification rates. We analyzed Accepted 25 February 2016 plastid and mitochondrial sequence data from five gene regions (>8000 bp) across 151 taxa to: (1) Available online 15 March 2016 produce a chronogram for major lineages in Brassicales, including Brassicaceae and Arabidopsis, based on greater taxon sampling across the order and previously overlooked fossil evidence, (2) examine Keywords: biogeographical ancestral range estimations and disjunct distributions in BioGeoBEARS, and (3) determine Arabidopsis thaliana where shifts in species diversification occur using BAMM. The evolution and radiation of the Brassicales BAMM BEAST began 103 Mya and was linked to a series of inter-continental vicariant, long-distance dispersal, and land BioGeoBEARS bridge migration events. North America appears to be a significant area for early stem lineages in the Brassicaceae order. Shifts to Australia then African are evident at nodes near the core Brassicales, which diverged Cleomaceae 68.5 Mya (HPD = 75.6–62.0). -
Forest Inventory and Analysis National Core Field Guide
National Core Field Guide, Version 5.1 October, 2011 FOREST INVENTORY AND ANALYSIS NATIONAL CORE FIELD GUIDE VOLUME I: FIELD DATA COLLECTION PROCEDURES FOR PHASE 2 PLOTS Version 5.1 National Core Field Guide, Version 5.1 October, 2011 Changes from the Phase 2 Field Guide version 5.0 to version 5.1 Changes documented in change proposals are indicated in bold type. The corresponding proposal name can be seen using the comments feature in the electronic file. • Section 8. Phase 2 (P2) Vegetation Profile (Core Optional). Corrected several figure numbers and figure references in the text. • 8.2. General definitions. NRCS PLANTS database. Changed text from: “USDA, NRCS. 2000. The PLANTS Database (http://plants.usda.gov, 1 January 2000). National Plant Data Center, Baton Rouge, LA 70874-4490 USA. FIA currently uses a stable codeset downloaded in January of 2000.” To: “USDA, NRCS. 2010. The PLANTS Database (http://plants.usda.gov, 1 January 2010). National Plant Data Center, Baton Rouge, LA 70874-4490 USA. FIA currently uses a stable codeset downloaded in January of 2010”. • 8.6.2. SPECIES CODE. Changed the text in the first paragraph from: “Record a code for each sampled vascular plant species found rooted in or overhanging the sampled condition of the subplot at any height. Species codes must be the standardized codes in the Natural Resource Conservation Service (NRCS) PLANTS database (currently January 2000 version). Identification to species only is expected. However, if subspecies information is known, enter the appropriate NRCS code. For graminoids, genus and unknown codes are acceptable, but do not lump species of the same genera or unknown code. -
Phylogeny and Biogeography of the American Live Oaks
Received Date : 03-Jan-2015 Revised Date : 15-May-2015 Accepted Date : 01-Jun-2015 Article type : Original Article Corresponding author email id: [email protected] Original Article Phylogeny and biogeography of the American live oaks (Quercus subsection Virentes): A genomic and population genetics approach Jeannine Cavender-Bares1* Antonio Gonzalez-Rodriguez2 Article Deren A.R. Eaton3 Andrew A. L. Hipp4,5 Anne Beulke1 Paul S. Manos6 Running head: Evolutionary history of the American live oaks 1Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN 55108 2Centro de Investigaciones en Ecosistemas, Universidad Nacional Autónoma de México, Morelia, Michoacán. 3Department of Ecology and Evolutionary Biology, Yale University, New Haven CT 4The Morton Arboretum, Lisle, Illinois 4The Field Museum, Chicago, Illinois 6Department of Biology, Duke University, Raleigh NC This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: Accepted 10.1111/mec.13269 This article is protected by copyright. All rights reserved. Keywords: Virentes, RADseq, genomic data, fossil calibration, phylogeography, introgression, ecological and climatic niches, Sea of Cortés, conservation Abstract The nature and timing of evolution of niche differentiation among closely related species remains an important question in ecology -
First Steps Towards a Floral Structural Characterization of the Major Rosid Subclades
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 First steps towards a floral structural characterization of the major rosid subclades Endress, P K ; Matthews, M L Abstract: A survey of our own comparative studies on several larger clades of rosids and over 1400 original publications on rosid flowers shows that floral structural features support to various degrees the supraordinal relationships in rosids proposed by molecular phylogenetic studies. However, as many apparent relationships are not yet well resolved, the structural support also remains tentative. Some of the features that turned out to be of interest in the present study had not previously been considered in earlier supraordinal studies. The strongest floral structural support is for malvids (Brassicales, Malvales, Sapindales), which reflects the strong support of phylogenetic analyses. Somewhat less structurally supported are the COM (Celastrales, Oxalidales, Malpighiales) and the nitrogen-fixing (Cucurbitales, Fagales, Fabales, Rosales) clades of fabids, which are both also only weakly supported in phylogenetic analyses. The sister pairs, Cucurbitales plus Fagales, and Malvales plus Sapindales, are structurally only weakly supported, and for the entire fabids there is no clear support by the present floral structural data. However, an additional grouping, the COM clade plus malvids, shares some interesting features but does not appear as a clade in phylogenetic analyses. Thus it appears that the deepest split within eurosids- that between fabids and malvids - in molecular phylogenetic analyses (however weakly supported) is not matched by the present structural data. Features of ovules including thickness of integuments, thickness of nucellus, and degree of ovular curvature, appear to be especially interesting for higher level relationships and should be further explored. -
Morchella Exuberans – Ny Murkla För Sverige
Svensk Mykologisk Tidskrift Volym 36 · nummer 3 · 2015 Svensk Mykologisk Tidskrift 1J@C%RV`:` 1R1$:`7 www.svampar.se 0VJ@7@QCQ$1@/ Sveriges Mykologiska Förening /VJ]%GC1HV`:`Q`1$1J:C:` 1@C:`IVR0:I]R Föreningen verkar för :J@J7 J1J$QH.IVR0VJ@ QH.JQ`RV%`Q]V1@ R VJ G?`V @?JJVRQI QI 0V`1$V 0:I]:` QH. 1J `VV8/VJ% @QIIV`IVR`7`:J%IIV` 0:I]:``QCC1J: %`VJ ]V`B`QH.?$:00V`1$V7@QCQ$1@:DV`VJ1J$8 R@7RR:0J: %`VJQH.:0:I]]CQH@J1J$QH.- 9 `%@ 1QJV` 1CC`V``: :`V`1JJ]BD7.VI1R: J: %]] `?R:JRV1@Q$QH.I:`@@V`%JRV`1:@ - 11180:I]:`8V8/VJV`.BCC$VJQI- :$:JRV:0$?CC:JRVC:$:` CVI@:] 1 D8/VJ ``:I ?CC IVR G1R`:$ R : @QJ :@ V` IVCC:J CQ@:C: 0:I]`V`VJ1J$:` QH. ``BJ/Q`V<: .Q` I1JJV`QJR8 0:I]1J `VV`:RV1C:JRV %JRV`C?: R:@QJ :@ %]]`?.BCCIVRI7@QCQ$1@:`V`- $:`1$`:JJC?JRV` R VJ :I0V`@:J IVR I7@QCQ$1@ `Q`@J1J$ QH. Redaktion 0V VJ@:]8 JVR:@ V`QH.:J0:`1$% $10:`V 1@:VCKQJ VRCVI@:]V`.BCCV$VJQI1J?J1J$:0IVRCVIR LH=: :J :0 VJ]B`V`VJ1J$VJG:J@$1`Q /JNLLHO//;< 5388-7733 =0:I]:`8V VRCVI:0 VJ` 7 [ 7`V`IVRCVII:`GQ::10V`1$V H=AQJVGQ`$ [ 7`V`IVRCVII:`GQ::% :J`V`0V`1$V G:`J: :`0V [ 7 `V` %RV`:JRVIVRCVII:`GQ::1 6: .:II:`01@ 0V`1$^6 _ VC8 [ 7 `V``=^=/_ =8H`QJVGQ`QI %GH`1]``QI:G`Q:R:`V1VCHQIV82:7IVJ Jan Nilsson `Q` ^46 _H:JGVI:RVG7H`VR1 H:`RG7 IVGV`$ 01Q%`1VG.Q]: 11180:I]:`8VQ` QQ%` :LL;J4< G:J@:HHQ%J7 =$8V 9:;<74 :9AL9D/74E4 Äldre nummer :00VJ@7@QCQ$1@/^ KNJE/KOJ<;<_`1JJ]BVJAEQI@:JGV ?CC: Sveriges Mykologiska Förening ``BJD8 9=V VJ@:] Previous issues Q` 0VJ@ 7@QCQ$1@ / ^KNJE/KOJ<;<_:`V:0:1C:GCVQJ:AE1 GVGQ`$%J10V`1 V H:JGVQ`RV`VR``QID8 :6 GVGQ`$ 11180:I]:`8V Omslagsbild 2:]V$=:6^C1Q].Q`%]1:H1J%_DQ H_ 8 I detta nummer nr 3 2015 *_77`J`7 SMF 2 Kompakt taggsvamp (Hydnellum compac- B`0]%]IG$ tum_ŽJB$`: :J@:`QIRVV@. -
* Correspondence To: Yujing Yan, Email: [email protected] Or Charles C
Supplementary Materials for Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils *Yujing Yan1,2, *Charles C. Davis2, Dimitar Dimitrov1,3, Zhiheng Wang4, Carsten Rahbek5,1,4,6,7, Michael Krabbe Borregaard1 1. Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen, Denmark 2. Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Ave, Cambridge, MA 02138, USA 3. Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, 5020 Bergen, Norway 4. Institute of Ecology, College of Urban and Environmental Sciences, Key Laboratory of Earth Surface Processes of Ministry of Education, Peking University, Beijing 100871, China 5. Center for Global Mountain Biodiversity, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark 6. Department of Life Sciences, Imperial College London, Silkwood Park campus, Ascot SL5 7PY, UK 7. Danish Institute for Advanced Study, University of Southern Denmark, Odense, Denmark. * Correspondence to: Yujing Yan, email: [email protected] or Charles C. Davis, email: [email protected] This PDF file includes: Appendix 1 (p.4) Supplementary Notes 1 (p. 2-4) Supplementary Tables S1 to S11 (p.7-42) Supplementary Figures S1 to S10 (p.43-52) 1 Supplementary Note 1. Inference of biogeographical patterns using a fully Bayesian method in RevBayes We applied an alternative biogeographic method proposed by Landis et al. (2020) to a subset of our Theaceae empirical dataset and compared its performance to our method. This method uses a hierarchical Bayesian approach to account for the uncertainty in the position of fossils (lack of characters), phylogenetic relationships, and the geological/biogeographic template at once. -
Suomen Helttasienten Ja Tattien Ekologia, Levinneisyys Ja Uhanalaisuus
Suomen ympäristö 769 LUONTO JA LUONNONVARAT Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus .......................... SUOMEN YMPÄRISTÖKESKUS Suomen ympäristö 769 Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus SUOMEN YMPÄRISTÖKESKUS Viittausohje Viitatessa tämän raportin lukuihin, käytetään lukujen otsikoita ja lukujen kirjoittajien nimiä: Esim. luku 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Julk.: Salo, P., Niemelä, T., Nummela-Salo, U. & Ohenoja, E. (toim.). Suomen helttasienten ja tattien ekologia, levin- neisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Ss. 109-224. Recommended citation E.g. chapter 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Distribution table of agarics and boletes in Finland. Publ.: Salo, P., Niemelä, T., Nummela- Salo, U. & Ohenoja, E. (eds.). Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Pp. 109-224. Julkaisu on saatavana myös Internetistä: www.ymparisto.fi/julkaisut ISBN 952-11-1996-9 (nid.) ISBN 952-11-1997-7 (PDF) ISSN 1238-7312 Kannen kuvat / Cover pictures Vasen ylä / Top left: Paljakkaa. Utsjoki. Treeless alpine tundra zone. Utsjoki. Kuva / Photo: Esteri Ohenoja Vasen ala / Down left: Jalopuulehtoa. Parainen, Lenholm. Quercus robur forest. Parainen, Lenholm. Kuva / Photo: Tuomo Niemelä Oikea ylä / Top right: Lehtolohisieni (Laccaria amethystina). Amethyst Deceiver (Laccaria amethystina). Kuva / Photo: Pertti Salo Oikea ala / Down right: Vanhaa metsää. Sodankylä, Luosto. Old virgin forest. Sodankylä, Luosto. Kuva / Photo: Tuomo Niemelä Takakansi / Back cover: Ukonsieni (Macrolepiota procera).