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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Jennings Et Al., 2002)
1 Food Webs Archimer December 2017, Volume 13, Pages 33-37 http://dx.doi.org/10.1016/j.fooweb.2017.08.001 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00395/50614/ © 2017 Published by Elsevier Inc. Investigating feeding ecology of two anglerfish species, Lophius piscatorius and Lophius budegassa in the Celtic Sea using gut content and isotopic analyses Issac Pierre 1, 2, Robert Marianne 2, Le Bris Hervé 1, Rault Jonathan 2, Pawlowski Lionel 2, Kopp Dorothee 2 1 ESE, Ecology and Ecosystem Health, Agrocampus Ouest, INRA, 35042, Rennes, France 2 Ifremer, Unité de Sciences et Technologies Halieutiques, Laboratoire de Technologie et Biologie Halieutique, 8 rue François Toullec, F-56100, Lorient, France Abstract : We used stable isotope ratio and gut content analyses to determine and compare the feeding ecology of two commercially important predator species, Lophius piscatorius and Lophius budegassa in the Celtic sea, where data concerning their trophic ecology remain sparse. This study included two areas and two size-classes, showing that anglerfish in the Celtic sea are mainly piscivorous top predators as observed in other marine waters. However, a substantial part of the diet of the fish in the small size classes consists of benthic macro-invertebrates, mainly Crustaceans. Despite the common knowledge that they are opportunistic predators that display a low degree of prey selectivity, our results suggest that the two species have different trophic niches when they occur in the same area. In the shallow area, both small and large individuals of L. budegassa seemed to prefer Crustacean prey, whereas L. piscatorius showed a clear shift from Crustaceans to fish prey with increasing size-class in the two areas. -
A Practical Handbook for Determining the Ages of Gulf of Mexico And
A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399. -
The Osmoregulatory Metabolism Op the Starry Flounder, Platichthys Stellatus
THE OSMOREGULATORY METABOLISM OP THE STARRY FLOUNDER, PLATICHTHYS STELLATUS by CLEVELAND PENDLETON HICKMAN, JR. B.A., DePauw University, 1950 M.S., University of New Hampshire, 1953 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in the Department of Zoology We accept this thesis as conforming to the required standard. THE UNIVERSITY OF BRITISH COLUMBIA June, 1958 Faculty of Graduate Studies PROGRAMME OF THE FINAL ORAL EXAMINATION FOR THE DEGREE OF DOCTOR OF PHILOSOPHY of CLEVELAND PENDLETON HICKMAN JR. B.A. DePauw University, 1950 M.S. University of New Hampshire, 1953 IN ROOM 187A, BIOLOGICAL SCIENCES BUILDING MONDAY, JUNE 30, 1958 at 10:30 a.m. COMMITTEE IN CHARGE DEAN F. H. SOWARD, Chairman H. ADASKIN W. S. HOAR W. A. CLEMENS W. N. HOLMES I. McT. COWAN C. C. LINDSEY P. A. DEHNEL H. McLENNAN R. F. SCAGEL External Examiner: F. E. J. FRY University of Toronto THE OSMOREGULATORY METABOLISM OF THE STARRY FLOUNDER, PLATICHTYS STELLATUS ABSTRACT Energy demands for osmotic regulation and the possible osmoregulatory role of the thyroid gland were investigated in the euryhaline starry flounder, Platichthys stellatus. Using a melt• ing-point technique, it was established that flounder could regulate body fluid concentration independent of widely divergent environ• mental salinities. Small flounder experienced more rapid disturb• ances of body fluid concentration than large flounder after abrupt salinity alterations. The standard metabolic rate of flounder adapted to fresh water was consistently and significantly less than that of marine flounder. In supernormal salinities standard metabolic rate was significantly greater than in normal sea water. -
Marine Fish Conservation Global Evidence for the Effects of Selected Interventions
Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca0 K. Smith & William J. Sutherland CONSERVATION EVIDENCE SERIES SYNOPSES Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca K. Smith and William J. Sutherland Conservation Evidence Series Synopses 1 Copyright © 2021 William J. Sutherland This work is licensed under a Creative Commons Attribution 4.0 International license (CC BY 4.0). This license allows you to share, copy, distribute and transmit the work; to adapt the work and to make commercial use of the work providing attribution is made to the authors (but not in any way that suggests that they endorse you or your use of the work). Attribution should include the following information: Taylor, N., Clarke, L.J., Alliji, K., Barrett, C., McIntyre, R., Smith, R.K., and Sutherland, W.J. (2021) Marine Fish Conservation: Global Evidence for the Effects of Selected Interventions. Synopses of Conservation Evidence Series. University of Cambridge, Cambridge, UK. Further details about CC BY licenses are available at https://creativecommons.org/licenses/by/4.0/ Cover image: Circling fish in the waters of the Halmahera Sea (Pacific Ocean) off the Raja Ampat Islands, Indonesia, by Leslie Burkhalter. Digital material and resources associated with this synopsis are available at https://www.conservationevidence.com/ -
Seasonal and Size-Based Predation on Two Species of Squid by Four Fish
605 Abstract-Longfin inshore (Loligo Seasonal and size-based predation on pealeii) and northern shortfin (lllex illecebrosus) squids are considered two species of squid by four fish predators important prey species in the North west Atlantic shelf ecosystem. The on the Northwest Atlantic continental shelf diets of four major squid predators, bluefish (Pomatomus saltatrix), goose Michelle D. Staudinger fish (Lophius americanus), silver hake (Merluccius bilinearis), and summer Department of Natural Resources Conservation flounder (Paralichthys dentatus), were 160 Holdsworth Way examined for seasonal and size-based University of Massachusetts, Amherst changes in feeding habits. Summer Amherst, Massachusetts 01003-9285 and winter, two time periods largely Email address: [email protected] absent from previous evaluations, were found to be the most impor tant seasons for predation on squid, and are also the periods when the majority of squid are landed by the regional fishery. Bluefish >450 mm, silver hake >300 mm, and summer Global depletion of marine predators significant predators of squid (Bow flounder >400 mm were all found has had dramatic effects on ecosys man et al., 2000). Squid represented to be significant predators of squid. tem structure and function (May et between 17% and 95% of the total These same size fish correspond to al., 1979; Jackson et al., 2001; Pauly mass consumed by these four finfish age classes currently targeted for et al., 2002). In many systems, the regionally. Dramatic changes in stock biomass expansion by management ramifications of such changes may not abundance and population structure committees. This study highlights be fully realized. Groundfish declines have occurred since specimens for the importance of understanding how have been linked to simultaneous Bowman et al.'s study were collect squid and predator interactions vary increases in cephalopod landings temporally and with changes in com ed 25-45 years ago. -
Scenario Calculations of Mercury Exposure
VKM Report 2019:3 Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment Report from the Norwegian Scientific Committee for Food and Environment (VKM) 2019:3 Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment 05.04.2019 ISBN: 978-82-8259-319-9 ISSN: 2535-4019 Norwegian Scientific Committee for Food and Environment (VKM) Po 4404 Nydalen N – 0403 Oslo Norway Phone: +47 21 62 28 00 Email: [email protected] vkm.no vkm.no/english Cover photo: Colourbox Suggested citation: VKM, Heidi Amlund, Kirsten Eline Rakkestad, Anders Ruus, Jostein Starrfelt, Jonny Beyer, Anne Lise Brantsæter, Sara Bremer, Gunnar Sundstøl Eriksen, Espen Mariussen, Ingunn Anita Samdal, Cathrine Thomsen and Helle Katrine Knutsen (2019). Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations. Opinion of the Panel on Contaminants of the Norwegian Scientific Committee for Food and Environment. VKM report 2019:3, ISBN: 978-82-8259-319-9, ISSN: 2535-4019. Norwegian Scientific Committee for Food and Environment (VKM), Oslo, Norway. Scenario calculations of mercury exposure from fish and overview of species with high mercury concentrations Preparation of the opinion The Norwegian Scientific Committee for Food and Environment (Vitenskapskomiteen for mat og miljø, VKM) appointed a project group to answer the request from the Norwegian Food Safety Authority. The project group consisted of three VKM-members, and three employees, including a project leader, from the VKM secretariat. -
© Iccat, 2007
A5 By-catch Species APPENDIX 5: BY-CATCH SPECIES A.5 By-catch species By-catch is the unintentional/incidental capture of non-target species during fishing operations. Different types of fisheries have different types and levels of by-catch, depending on the gear used, the time, area and depth fished, etc. Article IV of the Convention states: "the Commission shall be responsible for the study of the population of tuna and tuna-like fishes (the Scombriformes with the exception of Trichiuridae and Gempylidae and the genus Scomber) and such other species of fishes exploited in tuna fishing in the Convention area as are not under investigation by another international fishery organization". The following is a list of by-catch species recorded as being ever caught by any major tuna fishery in the Atlantic/Mediterranean. Note that the lists are qualitative and are not indicative of quantity or mortality. Thus, the presence of a species in the lists does not imply that it is caught in significant quantities, or that individuals that are caught necessarily die. Skates and rays Scientific names Common name Code LL GILL PS BB HARP TRAP OTHER Dasyatis centroura Roughtail stingray RDC X Dasyatis violacea Pelagic stingray PLS X X X X Manta birostris Manta ray RMB X X X Mobula hypostoma RMH X Mobula lucasana X Mobula mobular Devil ray RMM X X X X X Myliobatis aquila Common eagle ray MYL X X Pteuromylaeus bovinus Bull ray MPO X X Raja fullonica Shagreen ray RJF X Raja straeleni Spotted skate RFL X Rhinoptera spp Cownose ray X Torpedo nobiliana Torpedo -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Proposal for Inclusion of the Angelshark
CMS Distribution: General CONVENTION ON UNEP/CMS/COP12/Doc.25.1.23 MIGRATORY 6 June 2017 SPECIES Original: English 12th MEETING OF THE CONFERENCE OF THE PARTIES Manila, Philippines, 23 - 28 October 2017 Agenda Item 25.1. PROPOSAL FOR THE INCLUSION OF THE ANGELSHARK (Squatina squatina) ON APPENDIX I AND II OF THE CONVENTION Summary: The Government of Monaco has submitted the attached proposal* for the inclusion of the Angelshark (Squatina squatina) on Appendix I and II of CMS. *The geographical designations employed in this document do not imply the expression of any opinion whatsoever on the part of the CMS Secretariat (or the United Nations Environment Programme) concerning the legal status of any country, territory, or area, or concerning the delimitation of its frontiers or boundaries. The responsibility for the contents of the document rests exclusively with its author. UNEP/CMS/COP12/Doc.25.1.23 PROPOSAL FOR THE INCLUSION OF THE ANGELSHARK (Squatina squatina) ON THE APPENDICES OF THE CONVENTION ON THE CONSERVATION OF MIGRATORY SPECIES OF WILD ANIMALS A. PROPOSAL: Inclusion of the species Squatina squatina, Angelshark, in Appendix I and II. B. PROPONENT: Government of the Principality of Monaco C. SUPPORTING STATEMENT 1. Taxonomy 1.1 Class: Chondrichthyes, subclass Elasmobranchii 1.2 Order: Squatiniformes 1.3 Family: S quatinidae 1.4 Genus, species: Squatina squatina Linnaeus, 1758 1.5 Scientific synonyms 1.6 Common Name: English: Angelshark, common or European Angelshark, angel ray, shark ray, monkfish French: Ange de mer commun, L'angelot, Spanish: Angelote, Peje angel, tiburón angel German: Meerengel, Engelhai, Gemeiner Meerengel Italian: Angelu, Pesce angelo, Squatru cefalu, Terrezzino Portuguese: Anjo, Peixe anjo, Viola 2. -
A Chromosome-Level Genome Assembly of the Anglerfish Lophius Litulon
Downloaded from orbit.dtu.dk on: Oct 01, 2021 A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon Lv, Meiqi; Zhang, Yaolei; Liu, Kaiqiang; Li, Chang; Wang, Jiahao; Fan, Guangyi; Liu, Xin; Yang, Huanming; Liu, Changlin; Mahboob, Shahid Total number of authors: 12 Published in: Frontiers in Genetics Link to article, DOI: 10.3389/fgene.2020.581161 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Lv, M., Zhang, Y., Liu, K., Li, C., Wang, J., Fan, G., Liu, X., Yang, H., Liu, C., Mahboob, S., Liu, J., & Shao, C. (2020). A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon. Frontiers in Genetics, 11, [581161]. https://doi.org/10.3389/fgene.2020.581161 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. fgene-11-581161 November -
Fish and Amphibians
Fish and Amphibians Geology 331 Paleontology Phylum Chordata: Subphyla Urochordata, Cephalochordata, and: Subphylum Vertebrata Class Agnatha: jawless fish, includes the hagfish, conodonts, lampreys, and ostracoderms (armored jawless fish) Gnathostomates: jawed fish Class Chondrichthyes: cartilaginous fish Class Placoderms: armored fish Class Osteichthyes: bony fish Subclass Actinopterygians: ray-finned fish Subclass Sarcopterygians: lobe-finned fish Order Dipnoans: lung fish Order Crossopterygians: coelocanths and rhipidistians Class Amphibia Urochordates: Sea Squirts. Adults have a pharynx with gill slits. Larval forms are free-swimming and have a notochord. Chordates are thought to have evolved from the larval form by precocious sexual maturation. Chordate evolution Cephalochordate: Branchiostoma, the lancelet Pikaia, a cephalochordate from the Burgess Shale Yunnanozoon, a cephalochordate from the Lower Cambrian of China Haikouichthys, agnathan, Lower Cambrian of China - Chengjiang fauna, scale is 5 mm A living jawless fish, the lamprey, Class Agnatha Jawless fish do have teeth! A fossil jawless fish, Class Agnatha, Ostracoderm, Hemicyclaspis, Silurian Agnathan, Ostracoderm, Athenaegis, Silurian of Canada Agnathan, Ostracoderm, Pteraspis, Devonian of the U.K. Agnathan, Ostracoderm, Liliaspis, Devonian of Russia Jaws evolved by modification of the gill arch bones. The placoderms were the armored fish of the Paleozoic Placoderm, Dunkleosteus, Devonian of Ohio Asterolepis, Placoderms, Devonian of Latvia Placoderm, Devonian of Australia Chondrichthyes: A freshwater shark of the Carboniferous Fossil tooth of a Great White shark Chondrichthyes, Great White Shark Chondrichthyes, Carcharhinus Sphyrna - hammerhead shark Himantura - a ray Manta Ray Fish Anatomy: Ray-finned fish Osteichthyes: ray-finned fish: clownfish Osteichthyes: ray-finned fish, deep water species Lophius, an Eocene fish showing the ray fins. This is an anglerfish.