Animal-Algal Symbioses: Molecular, Physiological and Genetic Interactions, Processes and Adaptations
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Taxonomic Checklist of CITES Listed Coral Species Part II
CoP16 Doc. 43.1 (Rev. 1) Annex 5.2 (English only / Únicamente en inglés / Seulement en anglais) Taxonomic Checklist of CITES listed Coral Species Part II CORAL SPECIES AND SYNONYMS CURRENTLY RECOGNIZED IN THE UNEP‐WCMC DATABASE 1. Scleractinia families Family Name Accepted Name Species Author Nomenclature Reference Synonyms ACROPORIDAE Acropora abrolhosensis Veron, 1985 Veron (2000) Madrepora crassa Milne Edwards & Haime, 1860; ACROPORIDAE Acropora abrotanoides (Lamarck, 1816) Veron (2000) Madrepora abrotanoides Lamarck, 1816; Acropora mangarevensis Vaughan, 1906 ACROPORIDAE Acropora aculeus (Dana, 1846) Veron (2000) Madrepora aculeus Dana, 1846 Madrepora acuminata Verrill, 1864; Madrepora diffusa ACROPORIDAE Acropora acuminata (Verrill, 1864) Veron (2000) Verrill, 1864; Acropora diffusa (Verrill, 1864); Madrepora nigra Brook, 1892 ACROPORIDAE Acropora akajimensis Veron, 1990 Veron (2000) Madrepora coronata Brook, 1892; Madrepora ACROPORIDAE Acropora anthocercis (Brook, 1893) Veron (2000) anthocercis Brook, 1893 ACROPORIDAE Acropora arabensis Hodgson & Carpenter, 1995 Veron (2000) Madrepora aspera Dana, 1846; Acropora cribripora (Dana, 1846); Madrepora cribripora Dana, 1846; Acropora manni (Quelch, 1886); Madrepora manni ACROPORIDAE Acropora aspera (Dana, 1846) Veron (2000) Quelch, 1886; Acropora hebes (Dana, 1846); Madrepora hebes Dana, 1846; Acropora yaeyamaensis Eguchi & Shirai, 1977 ACROPORIDAE Acropora austera (Dana, 1846) Veron (2000) Madrepora austera Dana, 1846 ACROPORIDAE Acropora awi Wallace & Wolstenholme, 1998 Veron (2000) ACROPORIDAE Acropora azurea Veron & Wallace, 1984 Veron (2000) ACROPORIDAE Acropora batunai Wallace, 1997 Veron (2000) ACROPORIDAE Acropora bifurcata Nemenzo, 1971 Veron (2000) ACROPORIDAE Acropora branchi Riegl, 1995 Veron (2000) Madrepora brueggemanni Brook, 1891; Isopora ACROPORIDAE Acropora brueggemanni (Brook, 1891) Veron (2000) brueggemanni (Brook, 1891) ACROPORIDAE Acropora bushyensis Veron & Wallace, 1984 Veron (2000) Acropora fasciculare Latypov, 1992 ACROPORIDAE Acropora cardenae Wells, 1985 Veron (2000) CoP16 Doc. -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Holobiont Transcriptome of Colonial Scleractinian Coral Alveopora
Marine Genomics 43 (2019) 68–71 Contents lists available at ScienceDirect Marine Genomics journal homepage: www.elsevier.com/locate/margen Holobiont transcriptome of colonial scleractinian coral Alveopora japonica T ⁎ Taewoo Ryua, Wonil Choa, Seungshic Yumb,c, Seonock Wooc,d, a APEC Climate Center, Busan 48058, South Korea b South Sea Environment Research Center, Korea Institute of Ocean Science and Technology, Geoje 53201, South Korea c Faculty of Marine Environmental Science, University of Science and Technology (UST), Geoje 53201, South Korea d Marine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, South Korea ARTICLE INFO ABSTRACT Keywords: Climate change rapidly warms the ocean and marine species often move northwards for suitable habitats. Stony Alveopora japonica coral, Alveopora japonica, is observed more frequently for the last few years in temperate sea like Jeju Island, Coral South Korea. To understand the ecological consequences such as habitat formation and fate of this species in Holobiont changing environment, unraveling the genetic makeup of the species is essential. We sequenced the tran- Transcriptome scriptome of the A. japonica holobionts using Illumina HiSeq2000 platform. De novo assembly and analysis of Climate change coding regions predicted 108,636 coding sequences consisted of the coral host and residing Symbiodinium. Homology analysis showed the gene contents from our assembly are comparable to other sequenced corals and Symbiodiniums. The reference assembly of A. japonica will be a valuable resource to study the ecological characteristics of this species in the marine benthic ecosystem. 1. Introduction temperate region of Japan. The KC is experiencing a rapid increase in seawater temperature in response to global climate change and warmed The colonial stony coral Alveopora japonica is a zooxanthellate most rapidly from 1981 to 1998, when the surface temperatures rose by scleractinian coral in the family Acroporidae (WoRMS, n.d.). -
Final Corals Supplemental Information Report
Supplemental Information Report on Status Review Report And Draft Management Report For 82 Coral Candidate Species November 2012 Southeast and Pacific Islands Regional Offices National Marine Fisheries Service National Oceanic and Atmospheric Administration Department of Commerce Table of Contents INTRODUCTION ............................................................................................................................................. 1 Background ............................................................................................................................................... 1 Methods .................................................................................................................................................... 1 Purpose ..................................................................................................................................................... 2 MISCELLANEOUS COMMENTS RECEIVED ...................................................................................................... 3 SRR EXECUTIVE SUMMARY ........................................................................................................................... 4 1. Introduction ........................................................................................................................................... 4 2. General Background on Corals and Coral Reefs .................................................................................... 4 2.1 Taxonomy & Distribution ............................................................................................................. -
Scleractinia Fauna of Taiwan I
Scleractinia Fauna of Taiwan I. The Complex Group 台灣石珊瑚誌 I. 複雜類群 Chang-feng Dai and Sharon Horng Institute of Oceanography, National Taiwan University Published by National Taiwan University, No.1, Sec. 4, Roosevelt Rd., Taipei, Taiwan Table of Contents Scleractinia Fauna of Taiwan ................................................................................................1 General Introduction ........................................................................................................1 Historical Review .............................................................................................................1 Basics for Coral Taxonomy ..............................................................................................4 Taxonomic Framework and Phylogeny ........................................................................... 9 Family Acroporidae ............................................................................................................ 15 Montipora ...................................................................................................................... 17 Acropora ........................................................................................................................ 47 Anacropora .................................................................................................................... 95 Isopora ...........................................................................................................................96 Astreopora ......................................................................................................................99 -
Molecular Approaches Underlying the Oogenic Cycle of the Scleractinian
www.nature.com/scientificreports OPEN Molecular approaches underlying the oogenic cycle of the scleractinian coral, Acropora tenuis Ee Suan Tan1, Ryotaro Izumi1, Yuki Takeuchi 2,3, Naoko Isomura4 & Akihiro Takemura2 ✉ This study aimed to elucidate the physiological processes of oogenesis in Acropora tenuis. Genes/ proteins related to oogenesis were investigated: Vasa, a germ cell marker, vitellogenin (VG), a major yolk protein precursor, and its receptor (LDLR). Coral branches were collected monthly from coral reefs around Sesoko Island (Okinawa, Japan) for histological observation by in situ hybridisation (ISH) of the Vasa (AtVasa) and Low Density Lipoprotein Receptor (AtLDLR) genes and immunohistochemistry (IHC) of AtVasa and AtVG. AtVasa immunoreactivity was detected in germline cells and ooplasm, whereas AtVG immunoreactivity was detected in ooplasm and putative ovarian tissues. AtVasa was localised in germline cells located in the retractor muscles of the mesentery, whereas AtLDLR was localised in the putative ovarian and mesentery tissues. AtLDLR was detected in coral tissues during the vitellogenic phase, whereas AtVG immunoreactivity was found in primary oocytes. Germline cells expressing AtVasa are present throughout the year. In conclusion, Vasa has physiological and molecular roles throughout the oogenic cycle, as it determines gonadal germline cells and ensures normal oocyte development, whereas the roles of VG and LDLR are limited to the vitellogenic stages because they act in coordination with lipoprotein transport, vitellogenin synthesis, and yolk incorporation into oocytes. Approximately 70% of scleractinian corals are hermaphroditic broadcast spawners and have both male and female gonads developing within the polyp of the same colony1. Tey engage in a multispecifc spawning event around the designated moon phase once a year2–4. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Scleractinian Corals of the Montebello Islands
Records of the Western Australian Museum Supplement No. 59: 15-19 (2000). SCLERACTINIAN CORALS OF THE MONTEBELLO ISLANDS L.M. Marsh Western Australian Museum, Frands Street, Perth, Western Australia 6000, Australia Summary Montebellos and a further nine from previous The present report lists the first extensive collection records, giving a total of 150 species identified of corals from the Montebello Islands; it is likely that (Table 4). Several species of Montipora, Acropora, many species remain to be found. A total of 141 Favia and Favites remain unidentified and the coral species of 54 genera are recorded from the present fauna is probably still far from completely known, survey and a further 9 species are added from perhaps another 20-30% remains to be discovered. previous records. The coral fauna includes a suite of Seven species of ahermatypic (non zooxanthellate) five genera characteristic of turbid inshore waters but corals were also collected. most of the corals are characteristic of moderately It is probable that many more species will be clear water conditions. The coral fauna overall is found at the Montebellos when the reefs are more most similar to that of the Dampier Archipelago. completely surveyed as many uncommon species may not have been encountered. The species richness of Acropora and Montipora is likely to be Introduction under-recorded because of their great diversity, The first published record of a coral from the polymorphism and taxonomic difficulty. Montebello Islands is by Totton (1952) who figured A suite of species characteristic of upper reef a specimen of Moseleya latistellata collected by Mr fronts exposed to strong wave action (Pocillopora T.H. -
Conservation of Reef Corals in the South China Sea Based on Species and Evolutionary Diversity
Biodivers Conserv DOI 10.1007/s10531-016-1052-7 ORIGINAL PAPER Conservation of reef corals in the South China Sea based on species and evolutionary diversity 1 2 3 Danwei Huang • Bert W. Hoeksema • Yang Amri Affendi • 4 5,6 7,8 Put O. Ang • Chaolun A. Chen • Hui Huang • 9 10 David J. W. Lane • Wilfredo Y. Licuanan • 11 12 13 Ouk Vibol • Si Tuan Vo • Thamasak Yeemin • Loke Ming Chou1 Received: 7 August 2015 / Revised: 18 January 2016 / Accepted: 21 January 2016 Ó Springer Science+Business Media Dordrecht 2016 Abstract The South China Sea in the Central Indo-Pacific is a large semi-enclosed marine region that supports an extraordinary diversity of coral reef organisms (including stony corals), which varies spatially across the region. While one-third of the world’s reef corals are known to face heightened extinction risk from global climate and local impacts, prospects for the coral fauna in the South China Sea region amidst these threats remain poorly understood. In this study, we analyse coral species richness, rarity, and phylogenetic Communicated by Dirk Sven Schmeller. Electronic supplementary material The online version of this article (doi:10.1007/s10531-016-1052-7) contains supplementary material, which is available to authorized users. & Danwei Huang [email protected] 1 Department of Biological Sciences and Tropical Marine Science Institute, National University of Singapore, Singapore 117543, Singapore 2 Naturalis Biodiversity Center, PO Box 9517, 2300 RA Leiden, The Netherlands 3 Institute of Biological Sciences, Faculty of -
Qt1m8800db.Pdf
UC San Diego Other Recent Work Title Analysis of complete miochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia) Permalink https://escholarship.org/uc/item/1m8800db Authors Fukami, Hironobu Knowlton, N Publication Date 2005 eScholarship.org Powered by the California Digital Library University of California Coral Reefs (2005) 24: 410–417 DOI 10.1007/s00338-005-0023-3 REPORT Hironobu Fukami Æ Nancy Knowlton Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia) Received: 30 December 2004 / Accepted: 17 June 2005 / Published online: 12 August 2005 Ó Springer-Verlag 2005 Abstract Complete mitochondrial nucleotide sequences Introduction of two individuals each of Montastraea annularis,Mon- tastraea faveolata, and Montastraea franksi were deter- Members of the Montastraea annularis complex (M. mined. Gene composition and order differed annularis, Montastraea faveolata, and Montastraea substantially from the sea anemone Metridium senile, but franksi) are dominant reef-builders in the Caribbean were identical to that of the phylogenetically distant coral whose species status has been disputed for many years genus Acropora. However, characteristics of the non- (e.g., Knowlton et al. 1992, 1997; van Veghel and Bak coding regions differed between the two scleractinian 1993, 1994; Weil and Knowlton 1994; Szmant et al. genera. Among members of the M. annularis complex, 1997; Medina et al. 1999; Fukami et al. 2004a; Levitan only 25 of 16,134 base pair positions were variable. Six- et al. 2004). The fossil record suggests that M. franksi teen of these occurred in one colony of M. -
Members of the Montastraea Annularis Coral Species Complex (Cnidaria, Anthozoa, Scleractinia)
Coral Reefs (2005) DOI 10.1007/s00338-005-0023-3 REPORT Hironobu Fukami Æ Nancy Knowlton Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia) Received: 30 December 2004 / Accepted: 17 June 2005 Ó Springer-Verlag 2005 Abstract Complete mitochondrial nucleotide sequences Introduction of two individuals each of Montastraea annularis,Mon- tastraea faveolata, and Montastraea franksi were deter- Members of the Montastraea annularis complex (M. mined. Gene composition and order differed annularis, Montastraea faveolata, and Montastraea substantially from the sea anemone Metridium senile, but franksi) are dominant reef-builders in the Caribbean were identical to that of the phylogenetically distant coral whose species status has been disputed for many years genus Acropora. However, characteristics of the non- (e.g., Knowlton et al. 1992, 1997; van Veghel and Bak coding regions differed between the two scleractinian 1993, 1994; Weil and Knowlton 1994; Szmant et al. genera. Among members of the M. annularis complex, 1997; Medina et al. 1999; Fukami et al. 2004a; Levitan only 25 of 16,134 base pair positions were variable. Six- et al. 2004). The fossil record suggests that M. franksi teen of these occurred in one colony of M. franksi, which most closely resembles the morphology of the ancestral (together with additional data) indicates the existence of lineage, that M. faveolata diverged from this ancestral multiple divergent mitochondrial lineages in this species. lineage about 3–4 million years ago (mya), and that M. Overall, rates of evolution for these mitochondrial ge- annularis and M. franksi diverged much more recently nomes were extremely slow (0.03–0.04% per million years (0.5 mya; Pandolfi et al. -
Seventy-Four Universal Primers for Characterizing the Complete Mitochondrial Genomes of Scleractinian Corals (Cnidaria; Anthozoa) Mei-Fang Lin1,5, Katrina S
Zoological Studies 50(4): 513-524 (2011) Seventy-four Universal Primers for Characterizing the Complete Mitochondrial Genomes of Scleractinian Corals (Cnidaria; Anthozoa) Mei-Fang Lin1,5, Katrina S. Luzon2, Wilfredo Y. Licuanan3, Maria Carmen Ablan-Lagman4, and Chaolun A. Chen1,5,6,7,* 1Biodiversity Research Center, Academia Sinica, Nankang, Taipei 115, Taiwan 2The Marine Science Institute, Univ. of the Philippines, Quezon City 1101, the Philippines 3Biology Department and Brother Alfred Shields Marine Station, De La Salle Univ., Manila 1004, the Philippines 4Biology Department, De La Salle Univ., Manila,1004, the Philippines 5Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 6Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan 7ARC Centre of Excellence for Coral Reef Studies, James Cook Univ., Townsville 4810, Australia (Accepted January 28, 2011) Mei-Fang Lin, Katrina S. Luzon, Wilfredo Y. Licuanan, Maria Carmen Ablan-Lagman, and Chaolun A. Chen (2011) Seventy-four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria; Anthozoa). Zoological Studies 50(4): 513-524. Use of universal primers designed from a public DNA database can accelerate characterization of mitochondrial (mt) genomes for targeted taxa by polymerase chain reaction (PCR) amplification and direct DNA sequencing. This approach can obtain large amounts of mt information for phylogenetic inferences at lower costs and in less time. In this study, 88 primers were designed from 13 published scleractinian mt genomes, and these were tested on Euphyllia ancora, Galaxea fascicularis, Fungiacyathus stephanus, Porites okinawensis, Goniopora columna, Tubastraea coccinea, Pavona venosa, Oulastrea crispata, and Polycyathus sp., representing 7 families of complex and robust corals.