Accession Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

1433G_MOUSE 14-3-3 protein gamma AAMKNVTEL 16 97 -0.0073 PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 SYLSICKHY 20 91 -0.0050 PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 GYVQSKEMI 27 Oxidation(M)@8 93 -0.0037 RM51_MOUSE 39S ribosomal protein L51, mitochondrial KFVGNRMFI 22 94 -0.0208 KDSR_MOUSE 3-ketodihydrosphingosine reductase FYLGSFDNI 27 91 -0.0036 RS8_MOUSE 40S ribosomal protein S8 VYNASNNEL 23 92 0.0172 RSSA_MOUSE 40S ribosomal protein SA KFLAAGTHL 28 93 -0.0047 HEM1_MOUSE 5-aminolevulinate synthase, nonspecific, mitochondrial AYFSGMSKM 13 95 0.0159 RL10_MOUSE 60S ribosomal protein L10 KYIPNRGPL 26 99 -0.0032 RL3_MOUSE 60S ribosomal protein L3 GYKAGMTHI 25 99 -0.0044 RL3_MOUSE KYCQVIRII 25 91 -0.0091 K6PL_MOUSE 6-phosphofructokinase, liver type GYLATVTGI 29 94 -0.0024 K6PF_MOUSE 6-phosphofructokinase, muscle type GYLALVTSL 31 90 -0.0025 ASPM_MOUSE Abnormal spindle-like microcephaly-associated protein homolog SYNPLWLRI 27 90 -0.0047 IPP_MOUSE -binding protein IPP KYIEGVSDF 15 92 -0.0088 ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A FCTTGIDGAMTI na 97 0.0467 ARP2_MOUSE Actin-related protein 2 YAGSNFPEHI 11 99 0.0085 PURA2_MOUSE Adenylosuccinate synthetase isozyme 2 KYAHMINGF 14 Oxidation(M)@5 92 -0.0027 AEBP1_MOUSE Adipocyte enhancer-binding protein 1 SYKDMRQLM 17 92 -0.0031 ALDR_MOUSE Aldose reductase AFQKTLSDL 20 94 -0.0029 ALDR_MOUSE KYKPAVNQI 28 99 -0.0010 MGAT1_MOUSE Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase SYGTAVTHI 31 99 -0.0004 ACTZ_MOUSE Alpha-centractin YYLPDGSTI 29 91 -0.003 ENOA_MOUSE Alpha-enolase VYHNLKNVI 23 92 -0.0023 AINX_MOUSE Alpha- GYQDSIGQL 26 93 -0.0008 ALS2_MOUSE Alsin GYIASLHEL 24 92 -0.0017 ALMS1_MOUSE Alstrom syndrome protein 1 homolog KYLLQCETSL 31 94 -0.0517 ALMS1_MOUSE KYSSLYENL 26 91 -0.0046 AMPD2_MOUSE AMP deaminase 2 KYNPIGESVL 23 93 -0.0136 AL2S8_MOUSE Amyotrophic lateral sclerosis 2 chromosomal region candidate 8 homolog SYFPTVNDI 28 92 -0.0033 APC7_MOUSE Anaphase-promoting complex subunit 7 KMAECYTML 17 91 -0.0036 ANKY2_MOUSE repeat and MYND domain-containing protein 2 IFQKCITFL 24 92 -0.0017 ANR17_MOUSE Ankyrin repeat domain-containing protein 17 ASVLNVNHI 12 97 -0.0076 ANK2_MOUSE Ankyrin-2 GYISVVDTL 26 96 -0.0027 TAP1_MOUSE Antigen peptide transporter 1 LYQPTGGQL 28 96 0.0035 AP1S1_MOUSE AP-1 complex subunit sigma-1A KYFGSVCEL 28 93 0.0061 AP4M1_MOUSE AP-4 complex subunit mu-1 SFLPSGSEI 31 91 -0.0014 ATX10_MOUSE Ataxin-10 NSIRNLDTI 11 96 -0.0029 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

ATPB_MOUSE ATP synthase subunit beta, mitochondrial KLVPLKETI 21 92 -0.0027 ATPK_MOUSE ATP synthase subunit f, mitochondrial SYCISYKEL 27 91 -0.0049 ATAD2_MOUSE ATPase family AAA domain-containing protein 2 KYLTVKDYL 32 91 -0.0049 WRIP1_MOUSE ATPase WRNIP1 TYSPSRVLI 28 90 -0.0056 ABCD1_MOUSE ATP-binding cassette sub-family D member 1 SYQDLASQI 30 93 -0.0034 ABCD3_MOUSE ATP-binding cassette sub-family D member 3 YYQSGRMLL 25 92 -0.0078 ABCE1_MOUSE ATP-binding cassette sub-family E member 1 SYLDVKQRL 32 94 -0.0042 DDX24_MOUSE ATP-dependent RNA DDX24 QYNPSRQTL 26 99 -0.0004 DDX50_MOUSE ATP-dependent RNA helicase DDX50 SYQSQINQI 28 99 -0.0023 SUV3_MOUSE ATP-dependent RNA helicase SUPV3L1, mitochondrial IYGSLPPGTKL na 93 -0.0059 BAG4_MOUSE BAG family molecular chaperone regulator 4 SYNPSGQGL 31 99 -0.0032 COASY_MOUSE Bifunctional coenzyme A synthase QYNPVKQQL 28 92 -0.0023 BL1S2_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 2 KYLEMKDIAI 25 92 -0.0063 KCTD3_MOUSE BTB/POZ domain-containing protein KCTD3 VYLTPKTSV 31 98 0.0017 CAN6_MOUSE Calpain-6 TYIDTRTVF 19 94 -0.0052 CSTN1_MOUSE Calsyntenin-1 SYEEVLHLL 26 92 -0.0031 CSTN2_MOUSE Calsyntenin-2 RYEQVLHHL 23 97 -0.0037 CAPR1_MOUSE Caprin-1 KYQEVTNNL 26 92 -0.0022 CAPR2_MOUSE Caprin-2 KYEEVLHNL 24 95 -0.0024 CPT1A_MOUSE Carnitine O-palmitoyltransferase 1, liver isoform RYLESVRPLM 15 95 -0.0034 KC1D_MOUSE Casein kinase I isoform delta RYASINTHL 28 93 -0.0027 KC1D_MOUSE EYIHSKNFI 25 Glu>pyroGlu@N-term 93 -0.0027 KC1G2_MOUSE Casein kinase I isoform gamma-2 RYMSINTHL 27 98 -0.0005 CASP2_MOUSE Caspase-2 WYIEALTQV 24 97 -0.0095 CTNA1_MOUSE alpha-1 YKANRDLI na 95 -0.0024 CTNA1_MOUSE AYKANRDLI 22 93 -0.0141 CTR3_MOUSE Cationic transporter 3 AYFGVSSAL 24 90 -0.0023 CNOT1_MOUSE CCR4-NOT complex subunit 1 IYDKCITEL 27 91 0.0028 C209A_MOUSE CD209 antigen-like protein A FSVAQKSWN 5 Deamidated(Q)@5 99 0.0199 CDON_MOUSE Cell adhesion molecule-related/down-regulated by oncogenes AYNPVTSEL 27 92 -0.0073 CNTLN_MOUSE Centlein SYQKLYNEL 27 93 -0.0055 ZW10_MOUSE / protein zw10 homolog KYIPAARHL 29 99 -0.0022 CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 SYIGGHEGL 27 94 -0.0013 CTRO_MOUSE Citron Rho-interacting kinase SYSKALGYL 25 92 -0.0021 CSTF1_MOUSE Cleavage stimulation factor subunit 1 GYISIANGL 25 92 -0.0030 CSTF1_MOUSE SFHPSGDFI 26 91 -0.0041 CLPT1_MOUSE Cleft lip and palate transmembrane protein 1 homolog TYIESSTKV 26 99 -0.0160 CLPT1_MOUSE TYKALNTFI 28 90 -0.0042 Unmodified form only in untreated cells Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

SIA4B_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 TYAPVKSFL 31 91 -0.0041 COPE_MOUSE Coatomer subunit epsilon KYGVVLDEI 26 93 0.0083 COPG_MOUSE Coatomer subunit gamma SYVPARSLP 21 93 -0.0017 CC132_MOUSE Coiled-coil domain-containing protein 132 SYIPCLADL 27 90 -0.0053 CCD14_MOUSE Coiled-coil domain-containing protein 14 SMAKLLSDL 16 92 -0.0035 CCD22_MOUSE Coiled-coil domain-containing protein 22 VYKQLVSEL 25 92 -0.0351 CO6A5_MOUSE Collagen alpha-5(VI) chain MYKPDLNYI 25 91 -0.0046 CND1_MOUSE complex subunit 1 AFLSIVGKL 22 90 -0.0121 CSN2_MOUSE COP9 signalosome complex subunit 2 KYLVLANML 29 Oxidation(M)@8 94 -0.0061 COR2A_MOUSE Coronin-2A SYNPQKGIGI 23 90 -0.0030 CUED2_MOUSE CUE domain-containing protein 2 AYVPGFAHI 25 90 -0.0029 CUL1_MOUSE Cullin-1 RYMELYTHV 24 91 -0.0052 CDK14_MOUSE -dependent kinase 14 SYIHQRYIL 24 92 -0.0048 CDN1B_MOUSE Cyclin-dependent kinase inhibitor 1B FGPVNHEEL 13 99 0.0052 CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 SYVTMTATKI 29 99 -0.0009 XCT_MOUSE Cystine/glutamate transporter SYAELGTSI 33 95 -0.0023 QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial GDPKEEEEEELVD na 92 -0.0078 QCR6_MOUSE GLEDERKMLTGSGD na 98 -0.0065 COX2_MOUSE Cytochrome c oxidase subunit 2 KYFENWSASMI na 97 -0.0077 DYHC2_MOUSE Cytoplasmic 2 heavy chain 1 EYLQNLNHI 23 92 -0.0255 DP13B_MOUSE DCC-interacting protein 13-beta IYEAMRQVL 22 92 -0.0053 DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 NYSKLRETI 22 92 -0.0051 DOCK5_MOUSE Dedicator of cytokinesis protein 5 YYVYTQQEL 25 92 -0.0026 ECH1_MOUSE Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial KYQKTFTVI 29 91 -0.0044 DTL_MOUSE Denticleless protein homolog IYMFNMTGL 24 Oxidation(M)@6 92 0.0061 DMXL1_MOUSE DmX-like protein 1 TYLVSKESI 33 94 -0.0103 DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 TTVTNPEPM 7 Oxidation(M)@9 92 0.0018 DDB1_MOUSE DNA damage-binding protein 1 YYLQIHPQEL 25 92 -0.0050 DPOA2_MOUSE DNA polymerase alpha subunit B SYKAMFQQL 25 Oxidation(M)@5 91 -0.0002 DPOE1_MOUSE DNA polymerase epsilon catalytic subunit A GYLITNREI 24 91 -0.0071 DPOE1_MOUSE SYLPVGSHNL 26 90 -0.0041 DPOE1_MOUSE VYQSMKEEL 28 95 -0.0027 PRI2_MOUSE DNA primase large subunit KYFEMTHNV 20 92 -0.0012 MCM4_MOUSE DNA replication licensing factor MCM4 KYQQLFEDI 26 97 -0.0061 MCM6_MOUSE DNA replication licensing factor MCM6 LYHNLCTSL 27 Glutathione(C)@6 98 -0.0013 MCM7_MOUSE DNA replication licensing factor MCM7 TYTSARTLL 30 90 -0.0022 TOP2A_MOUSE DNA 2-alpha TYIGSVELV 28 91 -0.0026 RFX6_MOUSE DNA-binding protein RFX6 YYHSVYSGKGL na 93 -0.0046 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 SYLEMGHD na 93 -0.0049 RPB1_MOUSE SYLEMGHDI 28 Oxidation(M)@5 90 -0.0043 DJB11_MOUSE DnaJ homolog subfamily B member 11 MAPQNLSTF 1 96 -0.0017 DJC25_MOUSE DnaJ homolog subfamily C member 25 SYNKAISYL 27 91 -0.0039 RPN2_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 RYIANTVEL 23 99 0.0070 RPN2_MOUSE KYLAVLGTV 25 92 -0.0052 RPN2_MOUSE KYLAVLGTVTF na 98 -0.0055 MP2K1_MOUSE Dual specificity mitogen-activated kinase 1 SFVGTRSYM 16 Oxidation(M)@9 98 0.0330 DCTN2_MOUSE subunit 2 KYQRLLHEV 24 98 -0.0049 DYN2_MOUSE -2 MYHALKEAL 24 91 0.0012 DYN2_MOUSE SYVAIINKSI 29 94 -0.0052 DYH17_MOUSE Dynein heavy chain 17, axonemal FELICEIML 12 90 -0.0279 PIAS2_MOUSE E3 SUMO-protein ligase PIAS2 GYAPPPKNGI 21 99 -0.0089 HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 QYLKILTGL 27 Gln>pyroGlu@N-term 95 -0.0112 HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 SYTVGQSEL 26 99 -0.0009 LTN1_MOUSE E3 ubiquitin-protein ligase listerin AYFELVSAL 23 90 -0.0034 MYLIP_MOUSE E3 ubiquitin-protein ligase MYLIP VYLPTHTSLL 25 94 -0.0043 RN220_MOUSE E3 ubiquitin-protein ligase Rnf220 SYSMPLTSI 28 93 -0.0044 TRI37_MOUSE E3 ubiquitin-protein ligase TRIM37 GYIQQINNL 22 94 -0.0035 UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 SFLEDLTKM 16 Oxidation(M)@9 94 0.0004 UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 KYLSQKNVV 27 99 -0.0030 UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 SSYLTSASSL 16 99 -0.0033 UBR5_MOUSE AYSIVIRQI 22 92 -0.0039 UBR5_MOUSE SYLTSASSL 35 90 -0.0021 EMAL4_MOUSE Echinoderm -associated protein-like 4 NYDDIRTEL 26 99 -0.0022 EF1B_MOUSE 1-beta DYLADKSYI 27 93 0.0050 EF2_MOUSE Elongation factor 2 AYLPVNESF 21 93 -0.0042 ELOV4_MOUSE Elongation of very long chain fatty acids protein 4 SYNAGYSYI 25 90 -0.0015 ELOV4_MOUSE GSYNAGYSYI 12 94 -0.0019 ELP2_MOUSE Elongator complex protein 2 SAPRNFVENF 4 91 -0.0042 ECE1_MOUSE Endothelin-converting enzyme 1 YYSPTKNEI 27 97 -0.0022 ECE2_MOUSE Endothelin-converting enzyme 2 YYLPTKNEI 30 96 -0.0043 EPHA7_MOUSE Ephrin type-A receptor 7 GYMPQQTGL 27 96 -0.0033 EDEM1_MOUSE ER degradation-enhancing alpha-mannosidase-like 1 AYQSIQSYL 26 90 -0.0040 ESF1_MOUSE ESF1 homolog AKYRQLLQVI 11 98 -0.0070 DHB12_MOUSE Estradiol 17-beta-dehydrogenase 12 YDKIKTGL na 96 -0.0034 ERF3B_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3B KYKDMGTVVL 23 91 -0.0033 EIF3B_MOUSE Eukaryotic translation initiation factor 3 subunit B RYLVTFSPLM 15 97 -0.0040 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

EIF3F_MOUSE Eukaryotic translation initiation factor 3 subunit F TYLANLTQSQI na 95 0.0024 EIF3M_MOUSE Eukaryotic translation initiation factor 3 subunit M FYQNNKDFI 24 94 -0.0033 IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 YYQGLYETL 26 90 -0.0028 IF4E3_MOUSE Eukaryotic translation initiation factor 4E type 3 VYNNIPPVTSL na 94 -0.0032 EXT2_MOUSE Exostosin-2 AYFQSIKAI 25 95 -0.0043 XPO2_MOUSE Exportin-2 GYQTAFSQL 26 90 -0.0012 XPO4_MOUSE Exportin-4 QYYKLITFI 26 90 -0.0020 XPO4_MOUSE SFVNCLTHL 25 97 -0.0033 SSRP1_MOUSE FACT complex subunit SSRP1 SYKASSGLL 26 97 -0.0024 FANCA_MOUSE Fanconi anemia group A protein homolog RYLPAPTAL 32 92 -0.0039 FACD2_MOUSE Fanconi anemia group D2 protein homolog SYLQNFHHSV 26 98 -0.0065 FANCM_MOUSE Fanconi anemia group M protein homolog AYCQVVREL 24 92 0.0003 FPPS_MOUSE Farnesyl pyrophosphate synthase SYNRLKSLIE 13 93 -0.0040 FPPS_MOUSE SYNRLKSLI 28 91 -0.0034 FADS2_MOUSE Fatty acid desaturase 2 QYQIIMTMI 25 90 -0.0031 FAS_MOUSE Fatty acid synthase TALENLSTL 16 90 -0.0021 FAS_MOUSE AFVSMLNDI 20 91 0.0102 FAS_MOUSE YYIDCIKQV 23 93 -0.0036 FBX11_MOUSE F-box only protein 11 IYNHMYSGV 20 99 -0.0017 FBX38_MOUSE F-box only protein 38 KYVPLVTGL 33 91 -0.0033 FBX5_MOUSE F-box only protein 5 GYVVGRAAL 23 99 -0.0030 FBW1A_MOUSE F-box/WD repeat-containing protein 1A SYLDAKSLCAA na Ala->Thr@11 99 -0.0836 FRM4A_MOUSE FERM domain-containing protein 4A FYIESISYL 26 90 -0.0032 FRIL1_MOUSE Ferritin light chain 1 LFERLTLKHD 8 93 -0.0071 FIGL1_MOUSE Fidgetin-like protein 1 NYCVVTSSI 26 90 0.0002 FLNB_MOUSE -B SYLPTKPGEYF na 94 -0.0043 FLNB_MOUSE SYFPTVPGVYI na 90 -0.0030 FAK1_MOUSE Focal adhesion kinase 1 SYWEMRGNAL na 94 -0.0056 FKTN_MOUSE Fukutin RYKEARAFL 23 94 -0.0037 FGD6_MOUSE FYVE, RhoGEF and PH domain-containing protein 6 YYLPQLYEL 27 93 -0.0037 GBRT_MOUSE Gamma-aminobutyric acid receptor subunit theta IYVSSIEQI 29 93 -0.0019 GEMI5_MOUSE Gem-associated protein 5 SYLLSIHKV 26 92 -0.0032 GAN_MOUSE Gigaxonin SYGKLFESV 25 93 0.0048 GRDN_MOUSE Girdin YYQETLQQL 24 96 -0.0025 GNPI2_MOUSE Glucosamine-6-phosphate isomerase 2 YFKGLMHV na 94 -0.0065 GNPI2_MOUSE KYFKGLMHV 20 91 -0.0059 GRID1_MOUSE Glutamate receptor delta-1 subunit GYLQMLQISNL na 98 -0.0262 GPX2_MOUSE Glutathione peroxidase 2 FYDLSAIGL 23 92 0.0326 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

GPAT1_MOUSE Glycerol-3-phosphate acyltransferase 1, mitochondrial SYLPSSSEYSL na 92 -0.0048 GPAT4_MOUSE Glycerol-3-phosphate acyltransferase 4 GYYAMVGQV 19 92 -0.0607 GPDM_MOUSE Glycerol-3-phosphate dehydrogenase, mitochondrial NYMEVVSLL 25 94 -0.0048 PYGB_MOUSE Glycogen phosphorylase, brain form GFLTDLSQL 22 96 -0.0022 GOGA5_MOUSE Golgin subfamily A member 5 SYKQMQSEF 16 99 0.0240 GPR39_MOUSE G-protein coupled receptor 39 SYATLLHVL 27 92 -0.0016 GRHL1_MOUSE Grainyhead-like protein 1 homolog DYKESFNTI 23 99 -0.0018 GHITM_MOUSE Growth hormone-inducible transmembrane protein KYDPINSML 26 90 -0.0041 GCH1_MOUSE GTP cyclohydrolase 1 GYQETISDVL 22 93 -0.0048 GCH1_MOUSE GYLPNKQVL 29 91 -0.0017 SAR1B_MOUSE GTP-binding protein SAR1b NYLPAINGI 28 92 -0.0065 GNAI2_MOUSE Guanine nucleotide-binding protein G(i) subunit alpha-2 KYDEAASYI 27 99 -0.0004 GNAI2_MOUSE VYSNTIQSI 25 93 -0.0060 GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 AYAPSGNFV 26 92 -0.0003 GNAO_MOUSE Guanine nucleotide-binding protein G(o) subunit alpha VYSNTIQSL 25 93 -0.0060 GNAO_MOUSE YYLDSLDRI 26 91 -0.0062 GNA12_MOUSE NYFPSKQDI 28 95 -0.0024 GNA12_MOUSE LYVPALSAL 27 92 -0.0031 GBB4_MOUSE Guanine nucleotide-binding protein subunit beta-4 AYAPSGNYV 27 97 -0.0030 HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain GYVDNKEFV 24 91 -0.0013 HA19_MOUSE H-2 class I histocompatibility antigen, Q9 alpha chain RYLELGKETL 25 94 -0.0033 HNF4G_MOUSE Hepatocyte nuclear factor 4-gamma KYIPAFCEL 28 97 -0.0061 MYST2_MOUSE acetyltransferase MYST2 KYMKSQTIL 28 91 -0.0041 H2AX_MOUSE Histone H2A.x LAIRNDEEL 13 92 -0.0004 CDC37_MOUSE Hsp90 co-chaperone Cdc37 KYLSDNVHL 27 91 -0.0106 HD_MOUSE Huntingtin SYWLVRTEL 29 91 -0.0058 HD_MOUSE SYWLVRTELL 25 94 -0.0060 HYCCI_MOUSE Hyccin IYVSERTEL 30 91 -0.0475 IMA2_MOUSE subunit alpha-2 VYKASLNLI 24 94 -0.0185 IPO4_MOUSE Importin-4 YALENFVENL 14 94 -0.0034 HSDL1_MOUSE Inactive hydroxysteroid dehydrogenase-like protein 1 IYAPIREAL 26 92 -0.0054 IRS2_MOUSE Insulin receptor substrate 2 DYMPMSPTSV 24 97 0.0089 IRS2_MOUSE GYMPMTPGAAL na 90 -0.0755 INT6_MOUSE Integrator complex subunit 6 KYERIFTLL 27 92 -0.0048 INT7_MOUSE Integrator complex subunit 7 LYQSLLTQV 27 96 -0.0047 ITAV_MOUSE Integrin alpha-V KICPLPGTAL 16 94 -0.0104 GBP2_MOUSE Interferon-induced guanylate-binding protein 2 SYILSYSSV 26 92 -0.0528 IF122_MOUSE Intraflagellar transport protein 122 homolog SYNPVTHQL 28 92 -0.0026 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

SYIC_MOUSE Isoleucyl-tRNA synthetase, cytoplasmic MYQNLKLLI 26 92 -0.0056 AHI1_MOUSE Jouberin SYHPLENMV 25 Oxidation(M)@8 91 -0.0068 KTNB1_MOUSE Katanin p80 WD40-containing subunit B1 SYVVDLTRV 28 92 0.0071 KLDC5_MOUSE Kelch domain-containing protein 5 SYNPITNEW 17 94 -0.0193 KBTB5_MOUSE Kelch repeat and BTB domain-containing protein 5 ELVPTELNDI 12 93 -0.0570 KEAP1_MOUSE Kelch-like ECH-associated protein 1 YFRQSLSYL 20 94 -0.0034 KBP_MOUSE KIF1-binding protein LYIQAQNNL 22 98 0.0026 KBP_MOUSE TYLESSEAL 27 96 -0.0060 KIF1A_MOUSE -like protein KIF1A HYLLLREKL 24 93 -0.0045 KI20B_MOUSE Kinesin-like protein KIF20B QYEKVCKDL 24 Cys->Dha(C)@6 99 -0.0388 KI20B_MOUSE SYNSAVAEL 28 92 -0.0031 KIF22_MOUSE Kinesin-like protein KIF22 FYQDTISAL 26 90 -0.0029 KIF2C_MOUSE Kinesin-like protein KIF2C SFNEAMTQI 24 90 -0.0022 KIFC3_MOUSE Kinesin-like protein KIFC3 IYNEVLRDLL 22 97 -0.0067 NDC80_MOUSE Kinetochore protein NDC80 homolog VYAPLKELL 29 99 -0.0034 SPC24_MOUSE Kinetochore protein Spc24 AYRQLRETL 22 98 -0.0036 KNTC1_MOUSE Kinetochore-associated protein 1 SYLKCITFL 31 94 -0.0029 KLRAQ_MOUSE KLRAQ motif-containing protein 1 KYMETIEKL 25 93 -0.0027 KANK2_MOUSE KN motif and ankyrin repeat domain-containing protein 2 KYLENPNAL 25 90 -0.0010 KRIT1_MOUSE Krev interaction trapped protein 1 IYNPLFGSDL 22 95 -0.0036 LASS2_MOUSE LAG1 longevity assurance homolog 2 NYVRAGTLI 30 92 -0.0051 LAMA5_MOUSE Laminin subunit alpha-5 HYLPDLHHM 16 98 0.0008 LAMC1_MOUSE Laminin subunit gamma-1 AYNLLLRTL 20 94 -0.0051 LANC1_MOUSE LanC-like protein 1 YYVGAAHGL 27 90 -0.0015 AVL9_MOUSE Late secretory pathway protein AVL9 homolog GFVAGATNI 24 99 -0.0020 LGMN_MOUSE Legumain MYQKMVFYI 24 97 0.0072 LRCH3_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 3 LYQNCIRYI 24 95 -0.0058 LRCC1_MOUSE Leucine-rich repeat and coiled-coil domain-containing protein 1 NYIDSIHHL 25 95 -0.0064 LRC41_MOUSE Leucine-rich repeat-containing protein 41 SYNGLGSNI 29 94 -0.0012 LRC61_MOUSE Leucine-rich repeat-containing protein 61 SYWAVVREL 27 94 -0.0101 ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 GYLPLAHVL 29 96 -0.0031 CTR2_MOUSE Low affinity cationic amino acid transporter 2 TYFKMNYTGL 26 94 -0.0014 KDM5B_MOUSE Lysine-specific demethylase 5B AYLPNGTVL 32 92 -0.0037 LPCT4_MOUSE Lysophospholipid acyltransferase LPCAT4 LYKDGFSTI 23 95 0.0017 CCM2_MOUSE Malcavernin KYLGQLTSI 33 93 -0.0051 GRM5_MOUSE Metabotropic glutamate receptor 5 DMSAKEGICI 10 96 0.0486 MTX1_MOUSE Metaxin-1 LYQEARECL 24 99 -0.0136 SYMC_MOUSE Methionyl-tRNA synthetase, cytoplasmic HYHQLLEKV 20 96 -0.0031 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

MMAD_MOUSE Methylmalonic aciduria and homocystinuria type D homolog, mitochondrial SYLPGFCSL 31 93 -0.0047 MTL14_MOUSE Methyltransferase-like protein 14 IYKDSSTFL 28 94 0.0074 METL9_MOUSE Methyltransferase-like protein 9 SFVSSVFSL 28 95 0.0454 MCRS1_MOUSE Microspherule protein 1 LYDPVISKL 27 91 -0.0026 MTUS1_MOUSE Microtubule-associated tumor suppressor 1 homolog TYETSLSEI 28 99 -0.0009 MAVS_MOUSE Mitochondrial antiviral-signaling protein SYLPPGTSL 37 91 -0.0027 MTCH1_MOUSE Mitochondrial carrier homolog 1 KYLSVQGQL 29 91 -0.0110 MTCH1_MOUSE KYLSVQGQLF 17 91 -0.0036 MTCH1_MOUSE KYSGVLSSI 29 92 -0.0035 MK14_MOUSE Mitogen-activated protein kinase 14 KYIHSADII 27 93 -0.0016 MK03_MOUSE Mitogen-activated protein kinase 3 HYLDQLNHI 24 99 0.0065 MK03_MOUSE KYIHSANVL 27 90 -0.0033 BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta SYLQSQGIGV 24 99 -0.0015 BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 SYGTLLNVI 26 91 -0.0018 SMAD4_MOUSE Mothers against decapentaplegic homolog 4 HYWPVHNEL 26 92 -0.0053 MSPD3_MOUSE Motile sperm domain-containing protein 3 LYNPTGTAL 30 98 -0.0074 MOBL3_MOUSE Mps one binder kinase activator-like 3 KYFPSRVSI 29 96 -0.0025 MPRIP_MOUSE phosphatase Rho-interacting protein KYKDIYTEL 29 91 -0.0029 MYH10_MOUSE Myosin-10 LYKESLTKL 27 92 -0.0036 MYO1C_MOUSE Myosin-Ic VYSRTFTWL 25 92 -0.0035 MYO1D_MOUSE Myosin-Id SYNYIRVGAQL na 95 -0.0049 MYO9B_MOUSE Myosin-IXb NYQIVVSNL 25 94 -0.0019 MTMR4_MOUSE Myotubularin-related protein 4 TYSCLYGTFL 26 94 -0.0046 MTMR7_MOUSE Myotubularin-related protein 7 IGIENIHVM 3 91 0.0155 NACAD_MOUSE NAC-alpha domain-containing protein 1 SFLQSLSDL 25 94 -0.0145 ESCO2_MOUSE N-acetyltransferase ESCO2 KYQPNYKHI 29 99 -0.0017 NDUAB_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 VYMGTAAAL 25 91 -0.0019 NAA25_MOUSE N-alpha-acetyltransferase 25, NatB auxiliary subunit KYQEALDVI 25 90 0.0012 NCKP1_MOUSE Nck-associated protein 1 SFVNTMTSL 28 90 -0.0024 UBA3_MOUSE NEDD8-activating enzyme E1 catalytic subunit LYLQSVTSI 32 93 -0.0171 SYNE1_MOUSE Nesprin-1 KYQDSLQSI 30 96 0.0095 SYNE2_MOUSE Nesprin-2 SYSEARTLI 29 99 0.0176 SYNE2_MOUSE QYQNIKNNL 24 96 -0.0051 NBEA_MOUSE Neurobeachin SYSITVKEL 27 92 0.0006 NF1_MOUSE Neurofibromin TFMEVLTKI 24 91 0.0015 NFM_MOUSE Neurofilament medium polypeptide AYSSAMLSSAES na Oxidation(M)@6 92 -0.0226 NGDN_MOUSE Neuroguidin MYLMDLSHL 23 Oxidation(D)@5 93 -0.0058 SRC_MOUSE Neuronal proto-oncogene tyrosine-protein kinase Src FYITSRTQF 19 91 -0.0071 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

NPY_MOUSE Neuropeptide Y RYYSALRHYINLITR na 98 -0.0111 NPY_MOUSE YSALRHYI na 94 -0.0047 NPY_MOUSE YYSALRHYINLI na 90 -0.0112 NPY_MOUSE RYYSALRHYINLITRQRYG na 90 -0.0128 NPY_MOUSE YYSALRHYI 22 93 -0.0036 NPY_MOUSE YYSALRHYINLITR na 94 -0.0081 IKBA_MOUSE NF-kappa-B inhibitor alpha GYLAIVEHL 25 91 -0.0047 ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 AYMSIVTEM 18 Oxidation(M)@3 94 -0.0034 ZNFX1_MOUSE EYLPSQITI 28 93 -0.0023 NPC1_MOUSE Niemann-Pick C1 protein TYFMTYHTI 22 93 0.0007 NISCH_MOUSE Nischarin VYNQLRASL 23 95 -0.0053 NPRL3_MOUSE Nitrogen permease regulator 3-like protein SAVKNLQQL 16 91 -0.0127 TYK2_MOUSE Non-receptor tyrosine-protein kinase TYK2 KYLATLERL 27 90 -0.0033 NU155_MOUSE complex protein Nup155 TYLLTITST 22 90 -0.0010 NRF1_MOUSE Nuclear respiratory factor 1 MYQTVVTSL 33 93 -0.0349 NOL11_MOUSE Nucleolar protein 11 LYNFVKSQI 24 94 0.0003 NOP56_MOUSE Nucleolar protein 56 TYCRLAQFI 26 91 -0.0028 NOL6_MOUSE Nucleolar protein 6 QFWGTRSEL 21 94 -0.0003 NUPL2_MOUSE -like protein 2 SYLNSVQQL 30 92 0.0435 PANK3_MOUSE Pantothenate kinase 3 NYKRVTGTSL 27 99 -0.0026 GIPC1_MOUSE PDZ domain-containing protein GIPC1 SYMGIRDTEL 28 95 -0.0025 PHF10_MOUSE PHD finger protein 10 SYYPAENLI 28 90 -0.0032 PIGU_MOUSE Phosphatidylinositol glycan anchor biosynthesis class U protein RYIPLKVAL 28 92 -0.0066 PKHJ1_MOUSE Pleckstrin homology domain-containing family J member 1 SYEYMRQSL 26 99 -0.0031 PARP9_MOUSE Poly [ADP-ribose] polymerase 9 SYNPVYGAGI 23 99 -0.0306 PCGF6_MOUSE Polycomb group RING finger protein 6 GYLIDATTI 28 90 -0.0013 GLT14_MOUSE Polypeptide N-acetylgalactosaminyltransferase 14 NYIESASEL 27 90 -0.0011 PNPT1_MOUSE Polyribonucleotide nucleotidyltransferase 1, mitochondrial VYTATITEI 27 92 -0.0015 PFD5_MOUSE Prefoldin subunit 5 KYVEAKDCL 27 98 -0.0031 PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 TYFPTWEGL 27 92 0.0036 HOGA1_MOUSE Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial YAVGAVGGICGL na 97 0.0231 SYRM_MOUSE Probable arginyl-tRNA synthetase, mitochondrial VSYLLTLSHL 11 98 -0.0168 SMCA2_MOUSE Probable global transcription activator SNF2L2 SYYTVAHAI 29 95 -0.0043 NSD2_MOUSE Probable histone-lysine N-methyltransferase NSD2 SYKAIEAASSL na 99 -0.0150 PHB_MOUSE Prohibitin TYLPAGQSV 32 92 -0.0001 PPCE_MOUSE Prolyl endopeptidase KFIATLQYI 22 96 -0.0040 NRG2_MOUSE Pro-neuregulin-2, membrane-bound isoform YYIEGINQL 19 91 -0.0037 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

PSME2_MOUSE Proteasome activator complex subunit 2 AYGALRAMV 19 92 -0.0039 PSME2_MOUSE FYAELYHII 22 90 -0.0028 PSME2_MOUSE GYLPGNEKL 27 91 -0.0011 PSA2_MOUSE Proteasome subunit alpha type-2 NYVNGKTFL 28 90 -0.0101 PSA2_MOUSE YVNGKTFL na 92 -0.0021 PSB6_MOUSE Proteasome subunit beta type-6 TYQLGFHSI 25 95 -0.0020 ANM1_MOUSE Protein arginine N-methyltransferase 1 FYESMLNTV 20 91 -0.0015 AGO3_MOUSE Protein argonaute-3 DYQPGITYI 31 94 -0.0027 PDIA3_MOUSE Protein disulfide-isomerase A3 KYKELGEKL 27 93 -0.0025 EFR3A_MOUSE Protein EFR3 homolog A SAIINEDNL 13 95 -0.0012 F1142_MOUSE Protein FAM114A2 AYKWIRTSL 27 95 -0.0044 F119A_MOUSE Protein FAM119A MYLEMGAVEL 24 93 0.0023 F135A_MOUSE Protein FAM135A IYSEMIHNL 22 93 -0.0014 F179B_MOUSE Protein FAM179B EYIKVITGL 28 96 -0.0071 FRG1_MOUSE Protein FRG1 KYLGINSDGL 25 91 0.0054 K0664_MOUSE Protein KIAA0664 VYGAMHVEI 21 94 -0.0049 PACN2_MOUSE Protein kinase C and casein kinase substrate in protein 2 IYRELEQSI 25 94 -0.0060 LIN7A_MOUSE Protein lin-7 homolog A VYQYMHETI 23 93 0.0001 NDRG1_MOUSE Protein NDRG1 GYMPSASMTRL na 92 0.0029 PGLT1_MOUSE Protein O-glucosyltransferase 1 HYIPVKTDL 32 94 -0.0019 PPM1D_MOUSE 1D KYMEDVTQI 27 93 -0.0030 PPM1E_MOUSE Protein phosphatase 1E YYETSIHAI 25 97 0.0339 SDA1_MOUSE Protein SDA1 homolog LYTHIVTD na 91 -0.0052 SDA1_MOUSE LYTHIVTDI 25 90 -0.0065 SET_MOUSE Protein SET KYNKLRQPFF 12 94 -0.0058 SLMO2_MOUSE Protein slowmo homolog 2 SYLEGLMASTI na Oxidation(M)@7 96 -0.0050 SON_MOUSE Protein SON SYNTVAQEL 31 93 0.0056 SYS1_MOUSE Protein SYS1 homolog IGEYLCMRTEL na 91 -0.0089 VIR_MOUSE Protein virilizer homolog SYNCLLTCV 26 Glutathione(C)@4 92 -0.0066 YIPF5_MOUSE Protein YIPF5 GYVYGISAI 24 92 -0.0034 ZER1_MOUSE Protein zer-1 homolog GYLLDKETL 25 90 -0.0023 FAK2_MOUSE Protein-tyrosine kinase 2-beta AYLESINCV 24 90 0.0074 DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 KYLILPVHSNI na 95 -0.0022 ASXL2_MOUSE Putative Polycomb group protein ASXL2 SFSVTVTTI 26 93 -0.0039 P5CR3_MOUSE Pyrroline-5-carboxylate reductase 3 SYVDIHTGL 30 92 -0.0028 RBGP1_MOUSE GTPase-activating protein 1 GYCQGQSFL 21 92 0.0028 RSAD1_MOUSE Radical S-adenosyl methionine domain-containing protein 1, mitochondrial MYQEGRTVL 26 Oxidation(M)@1 95 -0.0048 RAB1B_MOUSE Ras-related protein Rab-1B SYANVKQWL 29 94 -0.0038 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

RB27A_MOUSE Ras-related protein Rab-27A SFLNVRNWI 24 90 -0.0059 REEP5_MOUSE Receptor expression-enhancing protein 5 YMLKCGFLL 16 90 -0.0228 RENT1_MOUSE Regulator of nonsense transcripts 1 MYFQTHDQI 21 94 -0.0011 IASPP_MOUSE RelA-associated inhibitor QYQQIINRL 23 94 -0.0070 RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog KFIESIQSI 25 94 -0.0123 RTN4_MOUSE Reticulon-4 GYLGNLSAV 24 90 0.0008 RTN4_MOUSE IYKGVIQAI 28 90 -0.0038 RET4_MOUSE Retinol-binding protein 4 KYWGVASFL 29 93 -0.0037 ENV2_MOUSE Retrovirus-related Env polyprotein from Fv-4 locus ECCFYADHTGL na Phe->Val@4 96 -0.0574 RHG19_MOUSE Rho GTPase-activating protein 19 YYLGSRTQM 21 Oxidation(M)@9 97 -0.0049 ARHGI_MOUSE Rho guanine nucleotide exchange factor 18 SYVEMQRTAI 29 99 -0.0063 ROCK1_MOUSE Rho-associated protein kinase 1 RYKDTINKI 25 99 -0.0028 RPP21_MOUSE Ribonuclease P protein subunit p21 LYQAAHCVL 23 93 0.0107 PRPS2_MOUSE Ribose-phosphate pyrophosphokinase 2 SYLFSHVPL 27 93 0.0004 KS6A3_MOUSE Ribosomal protein S6 kinase alpha-3 KYVYVVTELM 16 97 -0.0130 KS6A3_MOUSE KYVYVVTEL 32 91 -0.0057 KS6A6_MOUSE Ribosomal protein S6 kinase alpha-6 KYVYLVTDL 30 92 -0.0063 RIPL2_MOUSE RILP-like protein 2 SYVVGRELM 18 93 -0.0032 DUS11_MOUSE RNA/RNP complex-1-interacting phosphatase GYLICRYLI 23 95 -0.0026 RBM14_MOUSE RNA-binding protein 14 AYLSMSQGAVANA na 98 -0.0076 RBM38_MOUSE RNA-binding protein 38 TYGLTPHYI 23 91 -0.0392 RBM8A_MOUSE RNA-binding protein 8A GYLKGYTLV 26 93 -0.0027 RRP12_MOUSE RRP12-like protein AISKLYSTI 12 94 -0.0052 RUBIC_MOUSE Run domain Beclin-1 interacting and cystein-rich containing protein SYFGSSSSL 29 93 0.0253 AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 IYNNMKQFI 24 91 0.0013 AT2A2_MOUSE KYETNLTFV 26 94 -0.0060 DCPS_MOUSE Scavenger mRNA-decapping enzyme DcpS HYLPSYYHL 28 93 -0.0048 BSCL2_MOUSE Seipin SYMPTVSHL 29 93 -0.0013 BSCL2_MOUSE YSYMPTVSHL 11 91 -0.0027 SKIT1_MOUSE Selection and upkeep of intraepithelial T-cells protein 1 VMFLLQMV na 90 -0.0014 SEPP1_MOUSE Selenoprotein P WYIGDQNPM 13 91 -0.0038 SENP3_MOUSE Sentrin-specific protease 3 SYQRMPGNAMV na Oxidation(M)@5 99 -0.0079 SRSF5_MOUSE Serine/arginine-rich splicing factor 5 SYGDLKNAI 27 92 -0.0020 PAK7_MOUSE Serine/threonine-protein kinase PAK 7 QYISTASYL 28 Gln>pyroGlu@N-term 96 -0.0060 TAOK1_MOUSE Serine/threonine-protein kinase TAO1 AYLHSHTMI 29 97 -0.0031 TAOK2_MOUSE Serine/threonine-protein kinase TAO2 AYLHSHNMI 25 94 -0.0045 2ABD_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatoru sub B delta iso RYMMTRDYL 22 92 -0.0075 2A5A_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory sub alpha iso VYNVLKTLM 19 91 -0.0047 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

2A5G_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory sub gamma iso KYIDQKFVL 26 92 -0.0063 ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C SYQCAVTLV 30 94 -0.0011 TP4AP_MOUSE Short transient receptor potential channel 4-associated protein AYISQVPTQM 15 99 -0.0030 STAT3_MOUSE Signal transducer and activator of transcription 3 RYLEQLHQL na 90 -0.0031 SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha AYSKLGNYV 22 99 -0.0038 SMCR8_MOUSE Smith-Magenis syndrome chromosomal region candidate gene 8 homolog YYLHVQSML 26 92 -0.0029 SC6A6_MOUSE Sodium- and chloride-dependent taurine transporter SYLLGLTMV 27 91 -0.0033 SL9A4_MOUSE Sodium/hydrogen exchanger 4 MLSSVSETL 14 93 0.0321 S38A2_MOUSE Sodium-coupled neutral amino acid transporter 2 SYAMANTGI 28 91 -0.0021 SC5A6_MOUSE Sodium-dependent multivitamin transporter SFLPANVTV 24 93 -0.0045 S20A2_MOUSE Sodium-dependent phosphate transporter 2 YKDLLHKI na 91 -0.0048 S12A4_MOUSE Solute carrier family 12 member 4 IFFPSVTGI 27 91 -0.0023 S12A5_MOUSE Solute carrier family 12 member 5 IYFPSVTGIM 11 96 -0.0042 S12A5_MOUSE IYFPSVTGI 31 96 -0.0035 S12A5_MOUSE VYLPCLQNI 27 91 -0.0035 S35B1_MOUSE Solute carrier family 35 member B1 YYGILQEKI 21 92 -0.0060 SOS1_MOUSE Son of sevenless homolog 1 HYEITKQDI 23 97 -0.0041 SOS2_MOUSE Son of sevenless homolog 2 YYDLVRTEI 26 90 -0.0024 SPOPL_MOUSE Speckle-type POZ protein-like SYMWTINNF 15 92 -0.0041 SPTA2_MOUSE alpha chain, brain KALINADEL 17 90 -0.0035 SPAT5_MOUSE Spermatogenesis-associated protein 5 YFISSTTRI 25 94 -0.0065 SPEE_MOUSE Spermidine synthase SYQEMIANL 26 96 -0.0025 SKP1_MOUSE S-phase kinase-associated protein 1 NYLDIKGLL 27 95 -0.0002 DEGS1_MOUSE Sphingolipid delta(4)-desaturase DES1 SYYGPLNLL 26 97 -0.0003 SF3B3_MOUSE Splicing factor 3B subunit 3 NYISGIQTI 25 90 -0.0007 SF3B3_MOUSE YYFPVKNVI 27 91 -0.0042 FDFT_MOUSE Squalene synthase KYQTVIDDI 29 92 -0.0001 STC1_MOUSE Stanniocalcin-1 MYDICKSFL 22 94 -0.0032 STMN3_MOUSE -3 FYSQPHPNTI 20 95 -0.0026 NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating FIGTKTVI na 90 -0.0022 NSDHL_MOUSE NFIGTKTVI 26 91 -0.0046 STML2_MOUSE Stomatin-like protein 2 QYVSAFSKL 26 90 -0.0039 STRN3_MOUSE Striatin-3 KYHKLKYGTEL na 97 -0.0031 STRN3_MOUSE AFHPSKAYI 24 95 -0.0028 SMHD1_MOUSE Structural maintenance of flexible hinge domain-containing p 1 YIHGPKGNEI 11 99 -0.0027 SMHD1_MOUSE YYIHGPKGNEI na 93 -0.0028 SMC1A_MOUSE Structural maintenance of chromosomes protein 1A KYQIAVTKV 27 94 -0.0051 SMC2_MOUSE Structural maintenance of chromosomes protein 2 KFVDGVSTV 21 99 -0.0032 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

SMC4_MOUSE Structural maintenance of chromosomes protein 4 FYFALRDTL 21 91 -0.0051 SAE2_MOUSE SUMO-activating enzyme subunit 2 GYLGQVTTI 30 91 -0.0023 SODC_MOUSE Superoxide dismutase [Cu-Zn] AMKAVCVLKGD na Acetyl@N-term 96 -0.0020 SMCA5_MOUSE SWI/SNF-related matrix-assoc. actin-dep. reg. subfam. A member 5 VYDELRQCI 22 93 -0.0002 STXB2_MOUSE Syntaxin-binding protein 2 SYSSLIRNL 27 94 -0.0028 TAF5L_MOUSE TAF5-like RNA pol II p300/CBP-assoc. factor-assoc. factor 65 kDa subunit 5L SYNYLIRYL 26 91 -0.0052 TAF6L_MOUSE TAF6-like RNA pol II p300/CBP-assoc. factor-assoc. factor 65 kDa subunit 6L SYLDGKGNL 29 96 -0.0036 TLN1_MOUSE -1 GYLELLDHV 22 90 -0.0016 TLN2_MOUSE Talin-2 GYLDLLEHV 24 92 -0.0045 TPX2_MOUSE Targeting protein for Xklp2 TYVPIAQQV 28 97 -0.0022 TBC17_MOUSE TBC1 domain family member 17 GYVQGMSDL 23 97 0.0015 TB22A_MOUSE TBC1 domain family member 22A GYVQGINDL 23 94 0.0002 TBD2B_MOUSE TBC1 domain family member 2B KYLILLQEM 17 97 -0.0063 TBCD7_MOUSE TBC1 domain family member 7 QYHDILHAL 21 91 0.0037 TTI1_MOUSE TEL2-interacting protein 1 homolog GYNSVQHLI 25 90 -0.0004 TTI1_MOUSE SFVSVLHAL 25 90 -0.0024 TERF1_MOUSE Telomeric repeat-binding factor 1 SYSCMMEKI 24 Oxidation(M)@6 91 -0.0059 TEN4_MOUSE Teneurin-4 TEQFGKFGV 11 Deamidated(Q)@3 95 0.0691 TTC26_MOUSE Tetratricopeptide repeat protein 26 VYLQQIPDSTI na 93 -0.0030 TTC9C_MOUSE Tetratricopeptide repeat protein 9C RYLQLTQSEL 26 92 -0.0033 TXD16_MOUSE Thioredoxin domain-containing protein 16 KYITTLEDL 27 92 -0.0049 TSTD2_MOUSE Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 VYQQTASLL 27 96 -0.0046 THOC2_MOUSE THO complex subunit 2 SYHVIKGNL 26 99 -0.0029 THOC5_MOUSE THO complex subunit 5 homolog YQFDKVGILTL na 98 -0.0177 THOC7_MOUSE THO complex subunit 7 homolog QYQRMLSTL 23 91 -0.0042 TIPRL_MOUSE TIP41-like protein QYLPIKEAV 27 92 -0.0024 TPPC3_MOUSE Trafficking protein particle complex subunit 3 TYGALVTQL 28 90 -0.0041 TPPC9_MOUSE Trafficking protein particle complex subunit 9 VYNPMPFEL 24 Oxidation(M)@5 96 -0.0050 SMCA4_MOUSE Transcription activator BRG1 EYVANLTEL 27 93 -0.0031 TFDP2_MOUSE Transcription factor Dp-2 SYNEVADEL 28 97 -0.0024 TFEB_MOUSE Transcription factor EB SYLENPTSYHL na 95 -0.0064 TAF5_MOUSE Transcription initiation factor TFIID subunit 5 YYSGLKHFI 25 91 0.0137 TBL3_MOUSE beta-like protein 3 SYQTTRTVP 22 99 -0.0034 TLE1_MOUSE Transducin-like enhancer protein 1 LLKKDASGSP 3 Leu->Tyr@2 99 -0.0002 TRRAP_MOUSE Transformation/transcription domain-associated protein YYPVRHHL na 90 -0.0058 EI2BE_MOUSE Translation initiation factor eIF-2B subunit epsilon IYGDVISNI 26 92 -0.0024 TMC6_MOUSE Transmembrane channel-like protein 6 IYGQTLTWL 26 91 -0.0136 TMED3_MOUSE Transmembrane emp24 domain-containing protein 3 SYWSVGETI 30 93 -0.0020 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

T184C_MOUSE Transmembrane protein 184C TYLVILNNL 26 90 -0.0035 TM209_MOUSE Transmembrane protein 209 GYSPQLQGL 24 97 -0.0065 TMM62_MOUSE Transmembrane protein 62 TFSPLRTWL 26 90 -0.0108 TM63B_MOUSE Transmembrane protein 63B AYSFGRTTI 23 93 -0.0038 TMM66_MOUSE Transmembrane protein 66 AYKFGKTVV 24 99 -0.0034 TSC2_MOUSE Tuberin VYESLISHI 25 94 -0.0004 TTLL7_MOUSE polyglutamylase TTLL7 KYIPPNESNL 24 99 -0.0032 TWSG1_MOUSE Twisted gastrulation protein homolog 1 SFLETVNQL 24 99 -0.0025 TY3H_MOUSE Tyrosine 3-monooxygenase SYGELLHSL 26 91 -0.0047 FRK_MOUSE Tyrosine-protein kinase FRK AYLESQNYI 26 95 -0.0003 JAK1_MOUSE Tyrosine-protein kinase JAK1 DYLGSRQYV 27 98 -0.0002 JAK1_MOUSE SYFPEITHI 31 93 -0.0035 JAK1_MOUSE SYLEDKDLV 27 97 -0.0005 PTN23_MOUSE Tyrosine-protein phosphatase non-receptor type 23 KYLGQLHYL 28 92 -0.0015 SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 TYLPGIVGL 29 91 -0.0044 UBP28_MOUSE Ubiquitin carboxyl-terminal 28 KYQEALSYL 27 93 -0.0046 UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 SYLKLMTEL 32 Oxidation(M)@6 91 -0.0043 UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 GPYFPCRENI 11 94 -0.0037 UBP34_MOUSE YYINGKTGL 27 91 -0.0016 UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 AYLNQTVTEF 18 95 0.0037 UBX10_MOUSE UBX domain-containing protein 10 TVASKTSSLQL na 94 0.0055 GALE_MOUSE UDP- 4-epimerase GYIGSHTVL 29 94 -0.0013 S35D2_MOUSE UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter GAFIAAGSDL 11 90 0.0689 ADCK5_MOUSE Uncharacterized aarF domain-containing protein kinase 5 AYQGIYGSSL 25 99 -0.0107 CL004_MOUSE Uncharacterized protein C12orf4 homolog NYFVSISEL 26 92 0.0022 CM027_MOUSE Uncharacterized protein C13orf27 homolog AYKAVLNYL 24 93 -0.0064 CQ062_MOUSE Uncharacterized protein C17orf62 homolog LYKKLLTLL 27 95 -0.0048 CQ063_MOUSE Uncharacterized protein C17orf63 homolog YFQPLWNNI 22 96 -0.0743 CA112_MOUSE Uncharacterized protein C1orf112 homolog SQVVNVLTSVI na 94 -0.0095 CT072_MOUSE Uncharacterized protein C20orf72 homolog GYIESIQHI 25 92 -0.0031 CX026_MOUSE UPF0368 protein Cxorf26 homolog GYNKAVSVSI 22 95 -0.0057 CS025_MOUSE UPF0449 protein C19orf25 homolog AYVAMNERL 23 Oxidation(M)@5 91 -0.0074 CP062_MOUSE UPF0505 protein C16orf62 homolog FYVESRSMF 15 92 -0.0063 CN166_MOUSE UPF0568 protein C14orf166 homolog DYLVMLKAI 26 95 -0.0067 RD23B_MOUSE UV excision repair protein RAD23 homolog B SYENMVTEI 29 91 -0.0008 VPS11_MOUSE Vacuolar protein sorting-associated protein 11 homolog NYQEALRYI 24 92 -0.0092 VP13B_MOUSE Vacuolar protein sorting-associated protein 13B KYMEPLQEI 24 91 -0.0030 VPS35_MOUSE Vacuolar protein sorting-associated protein 35 TYNNILTVL 26 93 -0.0015 Accession Protein Kd Sequence Un Spleen Thymus Syf Modification Conf � mass

VPS45_MOUSE Vacuolar protein sorting-associated protein 45 TYQAMVHEL 26 91 0.0011 CAC1H_MOUSE Voltage-dependent T-type calcium channel subunit alpha-1H SYLPALSPVYF na 95 -0.0055 VATH_MOUSE V-type proton ATPase subunit H TFINLMTHI 24 90 -0.0041 WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 NYIPCKELI 28 92 -0.0026 FRITZ_MOUSE WD repeat-containing and planar cell polarity effector protein fritz homolog IYESVRNKL 25 99 -0.0753 WDR6_MOUSE WD repeat-containing protein 6 SYLESKGLL 31 91 -0.0033 WDR67_MOUSE WD repeat-containing protein 67 AYLPQTSRL 27 91 -0.0003 WDR70_MOUSE WD repeat-containing protein 70 DYIITPHAL 21 92 -0.0033 ZFY16_MOUSE Zinc finger FYVE domain-containing protein 16 KYIENLDNL 23 93 -0.0042 ZMYM2_MOUSE Zinc finger MYM-type protein 2 FYFNTKYFGL 20 97 -0.0019 Z280C_MOUSE Zinc finger protein 280C SFNPAISNI 25 91 -0.0022 ZN830_MOUSE Zinc finger protein 830 ARAAPSKPG 2 90 -0.0689 S39A6_MOUSE Zinc transporter ZIP6 AYLGMATGI 31 90 -0.0047