Glossary for the Crinoidea
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Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
Echinodermata: Crinoidea: Comatulida: Comasteridae) from the Ryukyu Islands, Japan*
Zootaxa 3367: 252–268 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Comanthus kumi, a new shallow-water comatulid (Echinodermata: Crinoidea: Comatulida: Comasteridae) from the Ryukyu Islands, Japan* YOSHIHISA FUJITA1,2,4 & MASAMI OBUCHI3 1University Education Center, University of the Ryukyus, 1 Senbaru, Nishihara-cho, Okinawa 903-0213, Japan. E-mail: [email protected] 2Marine Learning Center, 2-95-101 Miyagi, Chatan-cho, Okinawa 904-0113, Japan. 3Biological Institute on Kuroshio 560 Nishidomari, Otuski-cho, Kochi, 788-0333 Japan. E-mail: [email protected] 4Corresponding author * In: Naruse, T., Chan, T.-Y., Tan, H.H., Ahyong, S.T. & Reimer, J.D. (2012) Scientific Results of the Marine Biodiversity Expedition — KUMEJIMA 2009. Zootaxa, 3367, 1–280. Abstract A new species of the genus Comanthus A.H. Clark, 1908, is described on the basis of specimens collected from Kume Island and Okinawa Island, the Ryukyu Islands, Japan. Comanthus kumi n. sp. is distinguished from all ten congeners by having extremely elongate arms exceeding 300 mm in length and the colouration in life. The new species concealed its whole body in a crevice or small hole on coral reefs during the day and protruded only several elongate arms on the reef surface at night. This habit suggests that the new species is nocturnal. Key words: Crinoidea, Comatulida, Comasteridae, new species, Okinawa Introduction The species of the comatulid genus Comanthus A.H. Clark, 1908 are well known in shallow-water coral reefs (Kogo 1998; Rowe et al. 1986). The genus was established by A.H. -
Zootaxa, a New Genus and Species of Western Atlantic
Zootaxa 2449: 49–68 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new genus and species of Western Atlantic sea lily in the family Septocrinidae (Echinodermata: Crinoidea: Bourgueticrinida) ALEXANDR N. MIRONOV1 & DAVID L. PAWSON2 1P. P. Shirshov Institute of Oceanology, Russian Academy of Sciences, Nakhimovskyi Prospekt 36, Moscow 117997, Russia. E-mail: [email protected] 2D.L. Pawson, National Museum of Natural History, Smithsonian Institution, Washington DC 20013-7012, USA. E-mail: [email protected] Abstract Rouxicrinus vestitus new genus, new species, collected during submersible dives at depths of 421–887 m near Barbados, Colombia and the Bahamas is described, and notes on ecology are included. It is referred to the family Septocrinidae Mironov, 2000, which now comprises three genera, Zeuctocrinus A.M. Clark, 1973, Septocrinus Mironov, 2000, and Rouxicrinus new genus. This new genus differs significantly from both Septocrinus and Zeuctocrinus in having numerous low columnals in the proxistele, which tapers toward the crown, first pinnule arising more proximally, thorns on brachials and pinnulars, and a thick covering of soft tissue on arms and pinnules. Key words: Rouxicrinus vestitus, Caribbean Sea, taxonomy, Crinoidea, Bourgueticrinida, Septocrinidae Introduction The family Septocrinidae is a small group of extant ten-armed sea lilies. The first-captured species of this group, Zeuctocrinus gisleni A.M. Clark, 1973, has been described in detail by A.M. Clark (1973), Roux (1977) and Roux et al. (2002). A.M. Clark (1973) referred Zeuctocrinus to the family Phrynocrinidae A.H. Clark 1907 comprising the extant Phrynocrinus nudus A.H. -
Zoogeography of Tropical Western Atlantic Crinoidea (Echinodermata) David L
Nova Southeastern University NSUWorks Oceanography Faculty Articles Department of Marine and Environmental Sciences 7-1-1978 Zoogeography of Tropical Western Atlantic Crinoidea (Echinodermata) David L. Meyer University of Cincinnati - Main Campus Charles G. Messing University of Miami, [email protected] Donald B. Macurda Jr. University of Michigan - Ann Arbor Find out more information about Nova Southeastern University and the Oceanographic Center. Follow this and additional works at: http://nsuworks.nova.edu/occ_facarticles Part of the Marine Biology Commons, and the Oceanography and Atmospheric Sciences and Meteorology Commons Recommended Citation Meyer, David L., Charles G. Messing, and Donald B. Macurda Jr. "Biological results of the University of Miami deep-sea expeditions. 129. Zoogeography of tropical western Atlantic Crinoidea (Echinodermata)." Bulletin of Marine Science 28, no. 3 (1978): 412-441. This Article is brought to you for free and open access by the Department of Marine and Environmental Sciences at NSUWorks. It has been accepted for inclusion in Oceanography Faculty Articles by an authorized administrator of NSUWorks. For more information, please contact [email protected]. BULLETIN OF MARINE SCIENCE, 28(3): 412-441, 1978 BIOLOGICAL RESULTS OF THE UNIVERSITY OF MTAMI DEEP-SEA EXPEDITIONS. 129. ZOOGEOGRAPHY OF TROPICAL WESTERN ATLANTIC CRINOIDEA (ECHINODERMATA) David L. Meyer, Charles G. Messing, and Donald B. Macurda, Jr. ABSTRACT Recent collcctions of crinoids from the intertidal zone to ],650 m in the tropical western Atlantic have provided significant range extensions for more than half of the 44 comatulid and stalked species known from the region. Of the 34 comatulid species, over 60% are endemic to the region; of the 10 stalked species, 90% are endemic. -
Echinodermata: Crinoidea), with a Discussion of Relationships Between Crinoids with Xenomorphic Stalks
Zootaxa 3873 (3): 259–274 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3873.3.5 http://zoobank.org/urn:lsid:zoobank.org:pub:0BE01B2F-5753-41E1-91B3-907E887BE01B A new species of Western Atlantic sea lily in the family Bathycrinidae (Echinodermata: Crinoidea), with a discussion of relationships between crinoids with xenomorphic stalks ALEXANDR N. MIRONOV1 & DAVID L. PAWSON2 1P. P. Shirshov Institute of Oceanology, Russian Academy of Sciences, Nakhimovsky Prospekt 36, Moscow 117997, Russia. E-mail: [email protected] 2D.L. Pawson, National Museum of Natural History, Smithsonian Institution, Washington DC 20013-7012, USA. E-mail: [email protected] Abstract A new species in the family Bathycrinidae is described from abyssal depths from the Bahamas. It is referred to the recently established genus Discolocrinus, which formerly comprised a single species D. thieli Mironov, 2008 from the Eastern Pa- cific. Discolocrinus iselini n. sp. is characterized by large body size, high tegmen with tube-like upper region, extremely elongated IBr1 and IBr2, large knobby processes on primibrachials, and overgrowth of soft tissue on the pinnules, the tis- sue containing numerous perforated or imperforate ossicles of varying size and form. Differences between Discolocrinus and other bathycrinids may seem to be of taxonomic importance at the family level, but knowledge of the morphology and variability of both species of Discolocrinus is incomplete and, until a richer material becomes available, the genus should remain in family Bathycrinidae. Representatives of five families with xenomorphic stalks were examined to characterize the genera on the basis of number or form of knobby processes. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
The Echinoderm Newsletter
! ""'".--'"-,,A' THE ECHINODERM NEWSLETTER NUlIlber 24. 1999 Editor: Cynthia Ahearn Smithsonian Institution National Museum of Natural History Room W-31S, Mail Stop 163 Washington D.C. 20560-0163 U.S.A. [email protected] Distributed by: David Pawson Smithsonian Institution National Museum of Natural History Room W-323, Mail Stop 163 Washington D.C. 20560-0163 U.S.A. The newsletter contains information concerning meetings and conferences, publications of interest to echinoderm biologists, titles of theses on echinoderms, and research interests, and addresses of echinoderm biologists. Individuals who desire to receive the newsletter should send their name, address and research interests to the editor. scientific literature. and a published document. Koehler, 1899 '•.:.•/'i9 VIRTUAL ECHINODERM NEWSLETTER http://www.nmnh.si.edu/iz/echinoderm • TABLE OF CONTENTS Echinoderm Specialists Addresses; (p-); Fax (f-); e-mail numbers 1 Current Research 39 Papers Presented at Meetings (by country or region) Algeria 63 Australia 64 Europe. .................................................................64 Hong Kong 67 India 67 Jamaica ',' 67 Malaysia 68 Mexico 68 New Zealand 68 Pakistan 68 Russia 68 South America 69 United States 69 Papers Presented at Meetings (by conference) SYmposium on Cenozoic Paleobiology, Florida 71 Annual Meeting of Society for Integrative and Comparative Biology 71 Sixty-Ninth Annual Meeting of the Zoological Society of Japan 73 XIX Congreso de Ciencias del Mar, Chile 76 Evo 1uti on '99......................................................... 77 Fifth Florida Echinoderm Festival 78 10th International Echinoderm Conference 79 Theses and Dissertations 80 Announcements, Notices and Conference Announcements 86 Information Requests and Suggestions 88 Ailsa's Section Contribution by Lucia Campos-Creasey 90 Echinoderms in Literature 91 How I Began Studying Echinoderms - part 9 92 Obituaries Maria da Natividade Albuquerque 93 Alan S. -
Glossary for the Echinodermata
February 2011 Christina Ball ©RBCM Phil Lambert GLOSSARY FOR THE ECHINODERMATA OVERVIEW The echinoderms are a globally distributed and morphologically diverse group of invertebrates whose history dates back 500 million years (Lambert 1997; Lambert 2000; Lambert and Austin 2007; Pearse et al. 2007). The group includes the sea stars (Asteroidea), sea cucumbers (Holothuroidea), sea lilies and feather stars (Crinoidea), the sea urchins, heart urchins and sand dollars (Echinoidea) and the brittle stars (Ophiuroidea). In some areas the group comprises up to 95% of the megafaunal biomass (Miller and Pawson 1990). Today some 13,000 species occur around the world (Pearse et al. 2007). Of those 13,000 species 194 are known to occur in British Columbia (Lambert and Boutillier, in press). The echinoderms are a group of almost exclusively marine organisms with the few exceptions living in brackish water (Brusca and Brusca 1990). Almost all of the echinoderms are benthic, meaning that they live on or in the substrate. There are a few exceptions to this rule. For example several holothuroids (sea cucumbers) are capable of swimming, sometimes hundreds of meters above the sea floor (Miller and Pawson 1990). One species of holothuroid, Rynkatorpa pawsoni, lives as a commensal with a deep-sea angler fish (Gigantactis macronema) (Martin 1969). While the echinoderms are a diverse group, they do share four unique features that define the group. These are pentaradial symmetry, an endoskeleton made up of ossicles, a water vascular system and mutable collagenous tissue. While larval echinoderms are bilaterally symmetrical the adults are pentaradially symmetrical (Brusca and Brusca 1990). All echinoderms have an endoskeleton made of calcareous ossicles (figure 1). -
Helgen IS05050.Qxd
CSIRO PUBLISHING www.publish.csiro.au/journals/is Invertebrate Systematics, 2006, 20, 395-414 Species delimitation and distribution in Aporometra (Crinoidea:Echinodermata): endemic Australian featherstars Lauren E. Helgen^''~ and Greg W. Rouse^'^ "^School of Earth and Environmental Sciences, University of Adelaide, Adelaide, SA 5005 Australia. ^South Australian Museum, North Terrace, Adelaide, SA 5000 Australia. "^Corresponding author. Email: [email protected] Abstract. Aporometra Clark, 1938, which belongs to the monotypic Aporometridae, is a crinoid genus endemic to temperate Australian waters. It has been described as being 'viviparous' and is among the smallest of comatulids. The small size of specimens, and poor morphological justifications for specific diagnoses have created uncertainty over the number of species in the genus and their distributions. This study identified a suite of characters using data from scanning electron microscopy and mtDNA sequencing {COI and ND2) to assess the number of species of Aporometra. Specimens were obtained from museimis and collected from Western Australia, South Australia, Victoria and New South Wales. Type material was also examined when possible. Phylogenetic hypotheses were generated using maximum parsimony-based analyses of the separate and combined datasets. The results support the monophyly oí Aporometra and the presence of two species, Aporometra wilsoni (Bell, 1888) aaà Aporometra occidentalis A. H. Clark, 1938, along the southern Australian coast. The status of the third nominal species, Aporometra paedophora (H. L. Clark, 1909), remains to be resolved, but it may be a junior synonym of ^. wilsoni. Morphological diagnoses are reviewed. Aporometra occidentalis was only found in Western Australia, while A. wilsoni was found from Western Australia to Victoria. -
Ophiuroidea: Amphilepidida: Amphiuridae), from Geoje Island, Korea
-페이지 연속.(가능한한 짝수되게). -표 선: 맨위,맨아래 1pt / 중간 0.3pt -표 내부여백 : 선 있는 곳 2, 선 없는 곳 0.7 -et al. Journal of Species Research 9(3):273-279, 2020 A newly recorded brittle star, Amphiura (Amphiura) digitula (H.L. Clark, 1911) (Ophiuroidea: Amphilepidida: Amphiuridae), from Geoje Island, Korea Taekjun Lee1 and Sook Shin1,2 1Marine Biological Resource Institute, Sahmyook University, Seoul 01795, Republic of Korea 2Department of Animal Biotechnology and Resource, Sahmyook University, Seoul 01795, Republic of Korea *Correspondent: [email protected] We describe a newly recorded brittle star to South Korea, Amphiura (Amphiura) digitula (H.L. Clark, 1911), that was collected from Geoje Island, at a depth of 47 m. The species is characterized by a small disk, covered by numerous fine scales, small radial shields that are wider than long, a small stumpy hook at the distal end of the radial shield, two tooth papilla, two adoral shield spines, 2nd adoral shield spine longer than other, tapered dramatically toward dull tip, five arms with four proximal arm spines, and two tentacle scales. We also obtained a 657 bp sequence from COI gene and the amplified sequence matched the general DNA barcoding region. The NJ and ML phylogenetic analyses revealed A. (A.) digitula as monophyletic in the Amphiura clade. This species is clearly distinguished from other Amphiura species by morphological characteristics and the mitochondrial COI sequence, and thus represents the sixth Amphiura species reported to occur in Korea. Keywords: Echinodermata, mitochondrial COI, morphology, ophiuroid, taxonomy Ⓒ 2020 National Institute of Biological Resources DOI:10.12651/JSR.2020.9.3.273 INTRODUCTION al., 2016; Boissin et al., 2017; Knott et al., 2018; Paw- son, 2018). -
Glossary of Terms for Echinoderms
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ GLOSSARY OF TERMS FOR ECHINODERMS (taken from the SERTC Echinoderm Taxonomy Workshop manual) ABACTINAL. The area of the body opposite the mouth. ABORAL. In a direction away from the mouth; the part of the body opposite the mouth. ACCESSORY DORSAL ARM PLATE. In some ophiuroids, one or several small, symmetrically arranged plates that are inserted between the dorsal arm plate and the lateral arm plate. ACTINAL. The surface of the body that contains the mouth. ADAMBULACRAL. Towards, or immediately adjacent to, an ambulacrum. ADAPICAL. In echinoids, towards the highest part of the test. ADORAL SHIELDS. In ophiuroids, a pair of plates, one of which is found at each side of the oral shield. ADPRESSED. Squeezed against. The adpressed arm spines of ophiuroids are flattened against the sides of the arm. AMBULACRAL GROOVE. In asteroids, the groove on the oral (ventral) surface of the arm, in which the tube feet are carried. Its sides are formed by the adambulacral plates, and it is roofed by the ambulacral plates. In crinoids, a furrow on the oral (dorsal) surface of the pinnules, arms, and central body, which is lined with cilia and bordered by the tube feet. AMBULACRUM. A zone of the body that carries tube feet (pl. ambulacra). Echinoderms generally have 5 ambulacra. The midline of an ambulacrum is a radius. ANAL CONE (or TUBE). In crinoids and echinoids, a fleshy projection bearing the anus at its apex. ANCHOR. See OSSICLE TYPES. ANCHOR PLATE. See OSSICLE TYPES. -
Stalked Crinoids (Echinodermata) Collected by the R/V Polarstern and Meteor in the South Atlantic and in Antarctica
Zootaxa 3425: 1–22 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) Stalked crinoids (Echinodermata) collected by the R/V Polarstern and Meteor in the south Atlantic and in Antarctica MARC ELÉAUME1, JENS-MICHAEL BOHN2, MICHEL ROUX1 & NADIA AMÉZIANE1 1Muséum national d’Histoire naturelle, Département Milieux et Peuplements Aquatiques, UMR 7208-BOREA-MNHN/UMPC/IRD, CP 26, 57, rue Cuvier, 75231 Paris Cedex 05, France. E-mail: [email protected] 2Zoologische Staatssammlung München, Münchhausenstraße 21, D–81247 Munich, Germany. Abstract During the last decades, R/V Meteor and R/V Polarstern deep-sea investigations in the south Atlantic and neighbouring Southern Ocean collected new samples of stalked crinoids belonging to the families Bathycrinidae, Phrynocrinidae and Hyocrinidae which are herein described. The species found are Bathycrinus australis A.H. Clark, 1907b (the most abun- dant), Dumetocrinus aff. antarcticus (Bather, 1908), Hyocrinus bethellianus Thomson, 1876, Feracrinus heinzelleri new species, and Porphyrocrinus cf. incrassatus (Gislén, 1933). As only stalk fragments of bathycrinids were frequently col- lected, a distinction between the two Atlantic species B. australis and B. aldrichianus is proposed using characters of co- lumnal articulations. A few specimens attributed to Porphyrocrinus cf. incrassatus, Hyocrinus bethellianus and Hyocrinus sp. collected by the N/O Jean Charcot on the Walvis Ridge are also described, plus a new specimen of Porphyrocrinus incrassatus collected in the central mid-Atlantic. Biogeography and close affinities between species in the genera Bathy- crinus and Porphyrocrinus suggest an Antarctic origin of some stalked crinoids among the north Atlantic deep-sea fauna.