A Technoeconomic Platform for Early-Stage Process Design and Cost Estimation of Joint Fermentative-Catalytic Bioprocessing
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Rewiring Yarrowia Lipolytica Toward Triacetic Acid Lactone for Materials Generation
Rewiring Yarrowia lipolytica toward triacetic acid lactone for materials generation Kelly A. Markhama,1, Claire M. Palmerb,1, Malgorzata Chwatkoa, James M. Wagnera, Clare Murraya, Sofia Vazqueza, Arvind Swaminathana, Ishani Chakravartya, Nathaniel A. Lynda, and Hal S. Alpera,b,2 aMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712; and bInstitute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712 Edited by Sang Yup Lee, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea, and approved January 22, 2018 (received for review December 6, 2017) Polyketides represent an extremely diverse class of secondary me- or challenging syntheses, this is not an option for any larger-scale tabolites often explored for their bioactive traits. These molecules are chemistry application. also attractive building blocks for chemical catalysis and polymeriza- Here, we focus on the interesting, yet simple, polyketide, tri- tion. However, the use of polyketides in larger scale chemistry acetic acid lactone (TAL) as it is derived from two common applications is stymied by limited titers and yields from both microbial polyketide precursors, acetyl–CoA and malonyl–CoA. TAL has and chemical production. Here, we demonstrate that an oleaginous been demonstrated as a platform chemical that can be converted organism (specifically, Yarrowia lipolytica) can overcome such produc- into a variety of valuable products traditionally derived from tion limitations owing to a natural propensity for high flux through fossil fuels including sorbic acid, a common food preservative acetyl–CoA. By exploring three distinct metabolic engineering strate- with a global demand of 100,000 t (1, 15–18). -
Engineering Acetyl-Coa Metabolic Shortcut for Eco-Friendly Production
bioRxiv preprint doi: https://doi.org/10.1101/614131; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 4 Engineering acetyl-CoA metabolic shortcut for eco-friendly 5 production of polyketides triacetic acid lactone in Yarrowia lipolytica 6 7 8 Huan Liu1,2, Monireh Marsafari 1, 3, Fang Wang2, Li Deng2,* and Peng Xu1,* 9 10 11 1Department of Chemical, Biochemical and Environmental Engineering, University of 12 Maryland, Baltimore County, Baltimore, MD 21250. 13 14 2College of Life Science and Technology, Beijing University of Chemical 15 Technology, Beijing, China. 16 17 3Department of Agronomy and Plant Breeding, University of Guilan, Rasht, Islamic 18 Republic of Iran 19 20 21 22 23 24 25 26 27 28 * Corresponding author Tel: +1(410)-455-2474; fax: +1(410)-455-1049. E-mail address: [email protected] (PX) and [email protected] (LD). 1 bioRxiv preprint doi: https://doi.org/10.1101/614131; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 29 Abstract 30 Acetyl-CoA is the central metabolic node connecting glycolysis, Krebs cycle and 31 fatty acids synthase. Plant-derived polyketides, are assembled from acetyl-CoA and 32 malonyl-CoA, represent a large family of biological compounds with diversified 33 bioactivity. Harnessing microbial bioconversion is considered as a feasible approach 34 to large-scale production of polyketides from renewable feedstocks. -
The Biochemistry of Certain Fungicides in the Animal Body
THE BIOCHEMISTRY OF CERTAIN FUNGICIDES IN THE ANIMAL BODY By THOMAS EDWARD BARMAN A Theists presented in accordance with the regulations governing the award of the degree of Doctor of Philosophy in the University of London. partment of Biochemistry, St. Mary is Hospital Medical.School, Idomdon, W.2, August, 1961. TO iii ABSTRACT OF THESIS The fates of dehydroacetic acid and of two closely related pyronee, triacetic acid lactone and imino dehydroacetic acid have been investig- ated in the rabbit and rat. The synthesis of (14Cid-dehydroacetic acid* 'from 14C.1-acetyl bromide is described; in addition, the preparation of (14031-triacetic acid lactone and [ 4O4)-imino dehydroacetic acid, both from [140 J-dehydroacetic acid, are reported. By administering these labelled compounds to rabbits and rats, it was shown that [2.40J-dehydro- acetic acid gave rise to about 10% 14002 in the expired air, (1403). triacetio acid lactone to 50% and Cihed-imino dehydroacetic acid to 2..3%. In the urines of animals dosed with PICJ-dehydroacetic acid, dehydroacetic acid itself, hydroxy-dehydroacetic acid, their respective imino derivatives, triacetic acid lactone, urea and two metabolites of. unknown structures, metabolites "X" and lin were shown to be present by colour chromatography and eutoradiography. Of these, dehydroacetic acid, its hydrozy derivative and metabolitelfiXo'have been iao1ated, and imino - dehydroacetic acid and imino'hydroxydehydroacetic acid shown to be urinary artifacts. Work done on rat liver and kidney slices has established that, while triacetic acid lactone was oxidised in both, dehydroacetic acid was only attacked to a detectable extent,in liver slices. The binding of dehydroacetic acid to plasma albumin was shown by paper electro- phoresis. -
Rewiring Yarrowia Lipolytica Toward Triacetic Acid Lactone for Materials Generation
Rewiring Yarrowia lipolytica toward triacetic acid lactone for materials generation Kelly A. Markhama,1, Claire M. Palmerb,1, Malgorzata Chwatkoa, James M. Wagnera, Clare Murraya, Sofia Vazqueza, Arvind Swaminathana, Ishani Chakravartya, Nathaniel A. Lynda, and Hal S. Alpera,b,2 aMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712; and bInstitute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712 Edited by Sang Yup Lee, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea, and approved January 22, 2018 (received for review December 6, 2017) Polyketides represent an extremely diverse class of secondary me- or challenging syntheses, this is not an option for any larger-scale tabolites often explored for their bioactive traits. These molecules are chemistry application. also attractive building blocks for chemical catalysis and polymeriza- Here, we focus on the interesting, yet simple, polyketide, tri- tion. However, the use of polyketides in larger scale chemistry acetic acid lactone (TAL) as it is derived from two common applications is stymied by limited titers and yields from both microbial polyketide precursors, acetyl–CoA and malonyl–CoA. TAL has and chemical production. Here, we demonstrate that an oleaginous been demonstrated as a platform chemical that can be converted organism (specifically, Yarrowia lipolytica) can overcome such produc- into a variety of valuable products traditionally derived from tion limitations owing to a natural propensity for high flux through fossil fuels including sorbic acid, a common food preservative acetyl–CoA. By exploring three distinct metabolic engineering strate- with a global demand of 100,000 t (1, 15–18). -
MARKHAM-DISSERTATION-2018.Pdf
Copyright by Kelly Ann Markham 2018 The Dissertation Committee for Kelly Ann Markham Certifies that this is the approved version of the following dissertation: Expanding the Product Portfolio of Yarrowia lipolytica through Metabolic Engineering and Synthetic Biology Tool Development Committee: Hal Alper, Supervisor Lydia Contreras George Georgiou Adrian Keatinge-Clay Expanding the Product Portfolio of Yarrowia lipolytica through Metabolic Engineering and Synthetic Biology Tool Development by Kelly Ann Markham Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August 2018 Dedication For those who have been made to feel small. You are strong. You are important. You deserve to take up space. Acknowledgements First and foremost, I want to thank Dr. Hal Alper for being a supportive advisor and helping me grow in all aspects of being a scientist. From helpful tricks for personal development like working with Microsoft (that alignment function will always haunt me) to high expectations requiring proper experimental design, I have learned an amazing amount from Hal in the last five years. Hal has proven willing to take time to make sure that students are taken care of and meeting their full potential. Thanks for taking that time to make us all better researchers and giving us room to explore different projects and ideas. I am forever grateful for the opportunity to work with Hal and the Alper lab. Next, I would like to thank Dr. Lydia Contreras, Dr. George Georgiou, and Dr. -
Synthesis of Triacetic Acid Lactone Mannich Bases and Their Inhibition of Corrosion John Rey Apostol Romal Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2016 Synthesis of triacetic acid lactone Mannich bases and their inhibition of corrosion John Rey Apostol Romal Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Chemistry Commons Recommended Citation Romal, John Rey Apostol, "Synthesis of triacetic acid lactone Mannich bases and their inhibition of corrosion" (2016). Graduate Theses and Dissertations. 15802. https://lib.dr.iastate.edu/etd/15802 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Synthesis of triacetic acid lactone Mannich bases and their inhibition of corrosion by John Rey Apostol Romal A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Organic Chemistry Program of Study Committee: George A. Kraus, Major Professor Brent Shanks Arthur Winter Iowa State University Ames, Iowa 2016 Copyright © John Rey Apostol Romal, 2016. All rights reserved. ii DEDICATION To my family and friends. iii TABLE OF CONTENTS DEDICATION ........................................................................................................... ii LIST OF ABBREVIATIONS -
Bioengineering Triacetic Acid Lactone Production in Yarrowia Lipolytica for Pogostone Synthesis
Downloaded from orbit.dtu.dk on: Oct 01, 2021 Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis Yu, James; Landberg, Jenny Marie; Shavarebi, Farbod; Bilanchone, Virginia; Okerlund, Adam; Wanninayake, Umayangani; Zhao, Le; Kraus, George; Sandmeyer, Suzanne Published in: Biotechnology and Bioengineering Link to article, DOI: 10.1002/bit.26733 Publication date: 2018 Document Version Peer reviewed version Link back to DTU Orbit Citation (APA): Yu, J., Landberg, J. M., Shavarebi, F., Bilanchone, V., Okerlund, A., Wanninayake, U., Zhao, L., Kraus, G., & Sandmeyer, S. (2018). Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis. Biotechnology and Bioengineering, 115(9), 2383-2388. https://doi.org/10.1002/bit.26733 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Biotechnol Manuscript Author Bioeng. Author Manuscript Author manuscript; available in PMC 2019 November 14. -
Selective C-O Hydrogenolysis and Decarboxylation of Biomass-Derived Heterocyclic Compounds Over Heterogeneous Catalysts
Selective C-O Hydrogenolysis and Decarboxylation of Biomass-Derived Heterocyclic Compounds over Heterogeneous Catalysts By Mei Chia A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Chemical Engineering) At the UNIVERSITY OF WISCONSIN-MADISON 2013 Date of final oral examination: 11th July 2013 The dissertation is approved by the following members of the Final Oral Committee: James A. Dumesic, Professor, Chemical and Biological Engineering Thomas F. Kuech, Professor, Chemical and Biological Engineering Manos Mavrikakis, Professor, Chemical and Biological Engineering Brian F. Pfleger, Assistant Professor, Chemical and Biological Engineering Dane Morgan, Associate Professor, Materials Science and Engineering i Selective C-O Hydrogenolysis and Decarboxylation of Biomass-Derived Heterocyclic Compounds over Heterogeneous Catalysts Mei Chia Under the supervision of Professor James A. Dumesic At the University of Wisconsin-Madison The catalytic deoxygenation of biomass-derived compounds through selective C-O hydrogenolysis, catalytic transfer hydrogenation and lactonization, and decarboxylation to value- added chemicals over heterogeneous catalysts was examined under liquid phase reaction conditions. The reactions studied involve the conversion or production of heterocyclic compounds, specifically, cyclic ethers, lactones, and 2-pyrones. A bimetallic RhRe/C catalyst was found to be selective for the hydrogenolysis of secondary C-O bonds for a broad range cyclic ethers and polyols. Results -
Renewable Feedstocks Towards a Sustainable Future for Polymers
RENEWABLE FEEDSTOCKS TOWARDS A SUSTAINABLE FUTURE FOR POLYMERS A DISSERTATION SUBMITTED TO THE FACULTY OF THE UNIVERSITY OF MINNESOTA BY HUSSNAIN SAJJAD IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY THERESA M. REINEKE & WILLIAM B. TOLMAN, ADVISORS February 2021 Hussnain Sajjad © 2021 Acknowledgements I would first like to extend my sincere gratitude to my advisors, Profs. Theresa Reineke and Bill Tolman. Theresa, for always being a kind and encouraging mentor who offers unrestrictive freedom of exploration to her students; and Bill, for leading by example when it comes to thinking like a scientist and “digging deep” in order to find solutions to tough problems. Next, I would like to thank Prof. Tom Hoye, David Giles, Prof. Jane Wissinger, Letitia Yao, and Prof. Chris Ellison for their helpful feedback and mentorship, both in formal and informal ways, which has helped me immensely throughout this program. Graduate school would have felt incomplete without the friends and acquaintances I have made along the way. I especially am grateful to the past and present members of the Reineke and Tolman groups for their scientific and non-scientific conversations, encouragement and assistance during times when obstacles seem impassable, and for the countless positive memories I have gained over the years. I am grateful to all my friends, mentors, peers, and collaborators who have been a part of my scientific journey thus far. Furthermore, my family, especially my parents, has never wavered in their support for me. I thank them for the inspiration, encouragement, and motivation they have unconditionally provided to me. -
Engineering Acetyl-Coa Metabolic Shortcut for Eco-Friendly Production of Polyketides Triacetic Acid Lactone in Yarrowia Lipolyti
1 2 3 4 Engineering acetyl-CoA metabolic shortcut for eco-friendly 5 production of polyketides triacetic acid lactone in Yarrowia lipolytica 6 7 8 Huan Liu1,2, Monireh Marsafari 1, 3, Fang Wang2, Li Deng2,* and Peng Xu1,* 9 10 11 1Department of Chemical, Biochemical and Environmental Engineering, University of 12 Maryland, Baltimore County, Baltimore, MD 21250. 13 14 2College of Life Science and Technology, Beijing University of Chemical 15 Technology, Beijing, China. 16 17 3Department of Agronomy and Plant Breeding, University of Guilan, Rasht, Islamic 18 Republic of Iran 19 20 21 22 23 24 25 26 27 28 * Corresponding author Tel: +1(410)-455-2474; fax: +1(410)-455-1049. E-mail address: [email protected] (PX) and [email protected] (LD). 1 29 Abstract 30 Acetyl-CoA is the central metabolic node connecting glycolysis, Krebs cycle and 31 fatty acids synthase. Plant-derived polyketides, are assembled from acetyl-CoA and 32 malonyl-CoA, represent a large family of biological compounds with diversified 33 bioactivity. Harnessing microbial bioconversion is considered as a feasible approach 34 to large-scale production of polyketides from renewable feedstocks. Most of the 35 current polyketide production platform relied on the lengthy glycolytic steps to 36 provide acetyl-CoA, which inherently suffers from complex regulation with 37 metabolically-costly cofactor/ATP requirements. Using the simplest polyketide 38 triacetic acid lactone (TAL) as a testbed molecule, we demonstrate that acetate uptake 39 pathway in oleaginous yeast (Yarrowia lipolytica) could function as an acetyl-CoA 40 shortcut to achieve metabolic optimality in producing polyketides. -
Engineering Acetyl-Coa Metabolic Shortcut for Eco-Friendly Production
bioRxiv preprint doi: https://doi.org/10.1101/614131; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 4 Engineering acetyl-CoA metabolic shortcut for eco-friendly 5 production of polyketides triacetic acid lactone in Yarrowia lipolytica 6 7 8 Huan Liu1,2, Monireh Marsafari 1, 3, Fang Wang2, Li Deng2,* and Peng Xu1,* 9 10 11 1Department of Chemical, Biochemical and Environmental Engineering, University of 12 Maryland, Baltimore County, Baltimore, MD 21250. 13 14 2College of Life Science and Technology, Beijing University of Chemical 15 Technology, Beijing, China. 16 17 3Department of Agronomy and Plant Breeding, University of Guilan, Rasht, Islamic 18 Republic of Iran 19 20 21 22 23 24 25 26 27 28 * Corresponding author Tel: +1(410)-455-2474; fax: +1(410)-455-1049. E-mail address: [email protected] (PX) and [email protected] (LD). 1 bioRxiv preprint doi: https://doi.org/10.1101/614131; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 29 Abstract 30 Acetyl-CoA is the central metabolic node connecting glycolysis, Krebs cycle and 31 fatty acids synthase. Plant-derived polyketides, are assembled from acetyl-CoA and 32 malonyl-CoA, represent a large family of biological compounds with diversified 33 bioactivity. Harnessing microbial bioconversion is considered as a feasible approach 34 to large-scale production of polyketides from renewable feedstocks. -
Metabolic Engineering of Saccharomyces Cerevisiae for the Production of Triacetic Acid Lactone
UC Irvine UC Irvine Previously Published Works Title Metabolic engineering of Saccharomyces cerevisiae for the production of triacetic acid lactone. Permalink https://escholarship.org/uc/item/0nj4v8k6 Authors Cardenas, Javier Da Silva, Nancy A Publication Date 2014-09-01 DOI 10.1016/j.ymben.2014.07.008 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Metabolic Engineering 25 (2014) 194–203 Contents lists available at ScienceDirect Metabolic Engineering journal homepage: www.elsevier.com/locate/ymben Metabolic engineering of Saccharomyces cerevisiae for the production of triacetic acid lactone Javier Cardenas, Nancy A. Da Silva n Department of Chemical Engineering and Materials Science, University of California, Irvine, CA 92697-2575 USA article info abstract Article history: Biobased chemicals have become attractive replacements for their fossil-fuel counterparts. Recent Received 15 May 2014 studies have shown triacetic acid lactone (TAL) to be a promising candidate, capable of undergoing Received in revised form chemical conversion to sorbic acid and other valuable intermediates. In this study, Saccharomyces 16 July 2014 cerevisiae was engineered for the high-level production of TAL by overexpression of the Gerbera hybrida Accepted 21 July 2014 2-pyrone synthase (2-PS) and systematic engineering of the yeast metabolic pathways. Pathway analysis Available online 30 July 2014 and a computational approach were employed to target increases in cofactor and precursor pools to Keywords: improve TAL synthesis. The pathways engineered include those for energy storage and generation, Saccharomyces cerevisiae pentose biosynthesis, gluconeogenesis, lipid biosynthesis and regulation, cofactor transport, and Triacetic acid lactone fermentative capacity.