Glycosaminoglycans in Tissue Engineering: a Review
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Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton During Myelination
Research ReportDevelopment/Plasticity/Repair Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during Myelination https://doi.org/10.1523/JNEUROSCI.1434-18.2020 Cite as: J. Neurosci 2020; 10.1523/JNEUROSCI.1434-18.2020 Received: 31 May 2018 Revised: 23 February 2020 Accepted: 26 February 2020 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2020 Musah et al. 1 Mechanistic Target of Rapamycin Regulates the Oligodendrocyte Cytoskeleton during 2 Myelination 3 1Aminat S. Musah, 2Tanya L. Brown, 1Marisa A. Jeffries, 1Quan Shang, 2Hirokazu Hashimoto, 4 1Angelina V. Evangelou, 3Alison Kowalski, 3Mona Batish, 2Wendy B. Macklin and 1Teresa L. 5 Wood 6 1Department of Pharmacology, Physiology & Neuroscience, New Jersey Medical School, 7 Rutgers University, Newark, NJ U.S.A. 07101, 2Department of Cell and Developmental Biology, 8 University of Colorado School of Medicine, Aurora, CO, U.S.A. 80045, 3Department of Medical 9 and Molecular Sciences, University of Delaware, Newark, DE 19716 10 11 Abbreviated Title: mTOR Regulates the Oligodendrocyte Cytoskeleton 12 Corresponding Author: Teresa L. Wood, PhD, Department Pharmacology, Physiology & 13 Neuroscience, New Jersey Medical School Cancer Center H1200, Rutgers University, 205 S. 14 Orange Ave, Newark, NJ 07101-1709 15 [email protected] 16 Number of pages: 39 17 Number of Figures: 10 18 Number of Tables: 0 19 Number of Words: 20 Abstract: 242 21 Introduction: 687 22 Discussion: 1075 23 Conflict of Interest: The authors declare no competing financial interests. -
Emerging Views of Heparan Sulfate Glycosaminoglycan Structure
chain contains a b-D-glucosamine linked to an uronic acid, which can be one of two C5 epimers, either a-L-iduronic or b-D-glucuronic acid. Other than the C5 Emerging Views of Heparan Sulfate position of the uronic acid, HLGAGs Glycosaminoglycan Structure/Activity vary in their chain length, that is, the number of disaccharide repeat units, and Relationships Modulating Dynamic degree of sulfation and acetylation of each disaccharide unit. O-sulfation of the Biological Functions disaccharide repeat can occur at the 2-O Zachary Shriver, Dongfang Liu, and Ram Sasisekharan* position of the uronic acid and the 6-O and 3-O positions of the glucosamine. Thus, for a given disaccharide unit within an HSGAG structure, each site is Heparan sulfate glycosaminoglycans (HSGAGs) are an important subset either sulfated or unsubstituted, creat- of complex polysaccharides that represent the third major class of biopoly- ing eight possible combinations. In ad- mer, along with polynucleic acids and polypeptides. However, the impor- dition, as mentioned above, there are two possibilities for the uronic acid com- tance of HSGAGs in biological processes is underappreciated because of a ponent of each disaccharide unit, that lack of effective molecular tools to correlate specific structures with func- is, either iduronic acid or glucuronic tions. Only recently have significant strides been made in understanding acid, giving rise to a total of 16 different the steps of HSGAG biosynthesis that lead to the formation of unique possible disaccharide combinations. Fi- nally, the N-position of the glucosamine structures of functional importance. Such advances now create possibili- can be sulfated, acetylated, or unsubsti- ties for intervening in numerous clinical situations, creating much-needed tuted (three possible states). -
Orthopaedic Bioengineering Research Laboratory 2010-2011
2010-2011 Report including the Orthopaedic Bioengineering Research Laboratory Preface It is my pleasure to present our 2010-2011 report been possible without a number of our donors from the Orthopaedic Research Center and the stepping up to provide supplemental funding. Orthopaedic Bioengineering Research Laboratory I’m particularly grateful to Mr. Jim Kennedy for at Colorado State University. Our principal focus providing supplemental operating funds and continues to be solving the significant problems in continuing the legacy of his mother, Barbara Cox equine musculoskeletal disease as can be seen in this Anthony. I’m also grateful to Abigail Kawananakoa report but we also continue to investigate questions for continued support over and above the Endowed relevant to human joint disease and techniques Chair she donated three years ago; and Herbert Allen and devices for human osteoarthritis and articular for continuing to provide considerable support for cartilage repair when the technique can also benefit investigation of cutting edge therapies. the horse. There have been a number of notable projects in this regard. The studies, led by Dr. Dave We have added an Equine Sports Medicine Frisbie at the ORC in partnership with Dr. Alan Ambulatory clinical arm to the Orthopaedic Research Grodzinsky at MIT on an NIH Program Grant in Center and also initiated two residencies in Sports cartilage repair, have been completed and results Medicine and Rehabilitation. This follows on from are still be analyzed. We have three other ongoing the accreditation of a new specialty college, the NIH grants in partnership with collaborators. One is American College of Veterinary Sports Medicine and with Dr. -
Liquid Chromatography with Electrospray Ionization And
Hindawi Publishing Corporation International Journal of Analytical Chemistry Volume 2016, Article ID 9269357, 8 pages http://dx.doi.org/10.1155/2016/9269357 Research Article Liquid Chromatography with Electrospray Ionization and Tandem Mass Spectrometry Applied in the Quantitative Analysis of Chitin-Derived Glucosamine for a Rapid Estimation of Fungal Biomass in Soil Madelen A. Olofsson and Dan Bylund DepartmentofNaturalSciences,MidSwedenUniversity,85170Sundsvall,Sweden Correspondence should be addressed to Madelen A. Olofsson; [email protected] Received 2 September 2015; Accepted 12 January 2016 Academic Editor: Frantisek Foret Copyright © 2016 M. A. Olofsson and D. Bylund. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This method employs liquid chromatography-tandem mass spectrometry to rapidly quantify chitin-derived glucosamine for estimating fungal biomass. Analyte retention was achieved using hydrophilic interaction liquid chromatography, with a zwitter- ionic stationary phase (ZIC-HILIC), and isocratic elution using 60% 5 mM ammonium formate buffer (pH 3.0) and 40% ACN. Inclusion of muramic acid and its chromatographic separation from glucosamine enabled calculation of the bacterial contribution to the latter. Galactosamine, an isobaric isomer to glucosamine, found in significant amounts in soil samples, was also investigated. Thetwoisomersformthesameprecursorandproductionsandcouldnotbechromatographicallyseparatedusingthisrapid method. Instead, glucosamine and galactosamine were distinguished mathematically, using the linear relationships describing the differences in product ion intensities for the two analytes. The m/z transitions of 180 → 72 and 180 → 84 were applied for the detection of glucosamine and galactosamine and that of 252 → 126 for muramic acid. -
Glycosaminoglycan Therapy for Long-Term Diabetic Complications?
Diabetologia (1998) 41: 975±979 Ó Springer-Verlag 1998 For debate Glycosaminoglycan therapy for long-term diabetic complications? G.Gambaro1, J.Skrha2, A. Ceriello3 1 Institute of Internal Medicine, Division of Nephrology, University of Padua, Italy 2 3rd Department of Internal Medicine, Charles University, Prague, Czech Republic 3 Department of Internal Medicine, University of Udine, Italy Long-term complications are the most important and an aminosugar (glucosamine or galattosamine) cause of mortality of diabetic patiens in western [5]. These molecules are widely distributed in the countries and diabetic nephropathy has emerged as body and prominent in extracellular matrices [5]. a major determinant of end-stage renal failure [1]. Three major classes of GAGs have been de- Moreover, patients with diabetes mellitus have a scribed: a predominant large chondroitin sulphate, a high probability of developing acute cardiovascular small dermatan sulphate and a polydisperse heparan disease, in particular myocardial infarction and cere- sulphate (HS) [5]. GAGs are vital in maintaining the brovascular stroke which are the cause of death in structural integrity of the tissue and studies have nearly 80% of this population [2]. Although data shown that basement membranes contain HS in the from the Diabetes Control and Complications Trial form of a proteoglycan unique to that tissue [5]. HS establish that hyperglycaemia has a central role in di- forms anionic sites in this matrix and are thought to abetic complications, strict metabolic control can be restrict the passage of proteins through the basement difficult to achieve. The search for new and ancillary membrane [5]. approaches to diabetic complications is therefore warranted and understanding the distal pathway of glucose toxicity assumes clinical and therapeutical GAG metabolism and diabetes mellitus significance. -
Sialylated Keratan Sulfate Chains Are Ligands for Siglec-8 in Human Airways
Sialylated Keratan Sulfate Chains are Ligands for Siglec-8 in Human Airways by Ryan Porell A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland September 2018 © 2018 Ryan Porell All Rights Reserved ABSTRACT Airway inflammatory diseases are characterized by infiltration of immune cells, which are tightly regulated to limit inflammatory damage. Most members of the Siglec family of sialoglycan binding proteins are expressed on the surfaces of immune cells and are immune inhibitory when they bind their sialoglycan ligands. When Siglec-8 on activated eosinophils and mast cells binds to its sialoglycan ligands, apoptosis or inhibition of mediator release is induced. We identified human airway Siglec-8 ligands as sialylated and 6’-sulfated keratan sulfate (KS) chains carried on large proteoglycans. Siglec-8- binding proteoglycans from human airways increase eosinophil apoptosis in vitro. Given the structural complexity of intact proteoglycans, target KS chains were isolated from airway tissue and lavage. Biological samples were extensively proteolyzed, the remaining sulfated glycan chains captured and resolved by anion exchange chromatography, methanol-precipitated then chondroitin and heparan sulfates enzymatically hydrolyzed. The resulting preparation consisted of KS chains attached to a single amino acid or a short peptide. Purified KS chains were hydrolyzed with either hydrochloric acid or trifluoroacetic acid to release acidic and neutral sugars, respectively, followed by DIONEX carbohydrate analysis. To isolate Siglec-8-binding KS chains, purified KS chains from biological samples were biotinylated at the amino acid, resolved by affinity and/or size- exclusion chromatography, the resulting fractions immobilized on streptavidin microwell plates, and probed for binding of Siglec-8-Fc. -
Chapter 12 Slides
11/15/17 CHAPTER 12: Carbohydrates: Structure and Function OUTLINE • 12.1 Role of Carbohydrates • 12.2 Monosaccharides • 12.3 Complex Carbohydrates • 12.4 Carbohydrate Catabolism • 12.5 Oligosaccharides as Cell Markers CHAPTER 12: Carbohydrates: Structure and Function WHAT ARE CARBOHYDRATES? • Glucose and its derivatives are carbohydrates: Ø Carbohydrates are simple organic molecules that have a shared basic chemical Formula: Cn(H2O)n Ø The name “carbo + hydrate” represents that Fact that they are made from CO2 and H2O by photosynthesis • About halF oF all earth’s solid carbon is Found in two polymers of glucose found in plants: Ø Starch = major energy storage molecule Ø Cellulose = major structural component oF the plant cell wall (aka. “fiber”) CHAPTER 12: Carbohydrates: Structure and Function THE SIMPLEST CARBOHYDRATES • Monosaccharides are carbohydrates that cannot be hydrolyZed into simpler carbohydrates: Ø These are the Fundamental building blocks For all other carbohydrates (oFten called “simple sugars”) Ø All have Formulas of based on the basic pattern: Cn(H2O)n • Monosaccharides have speciFic Functional groups: 1. An aldehyde OR a ketone (not both!) 2. Several (two or more) alcohol (-OH) groups 1 11/15/17 CHAPTER 12: Carbohydrates: Structure and Function STRUCTURE & NOMENCLATURE OF MONOSACCHARIDES • Monosaccharides are classiFied by two features: 1. Length of their main carbon chain (utilize standard IUPAC naming For # oF carbons) 2. Whether they contain an aldehyde or ketone group • Names always end with –ose • Two common hexoses: -
Amino Sugars and Muramic Acid—Biomarkers for Soil Microbial Community Structure Analysis
Soil Biology & Biochemistry 36 (2004) 399–407 www.elsevier.com/locate/soilbio Amino sugars and muramic acid—biomarkers for soil microbial community structure analysis Bruno Glasera,*, Marı´a-Bele´n Turrio´nb, Kassem Alefc aInstitute of Soil Science and Soil Geography, University of Bayreuth, Bayreuth D-95440, Germany bArea of Soil Science and Soil Chemistry, ETSIIAA, University of Valladolid, Palencia 34004, Spain cUmwelt und Technologie Consulting, Bayreuth D-95448, Germany Received 13 December 2002; received in revised form 22 July 2003; accepted 7 October 2003 Abstract Characterizing functional and phylogenetic microbial community structure in soil is important for understanding the fate of microbially- derived compounds during the decomposition and turn-over of soil organic matter. This study was conducted to test whether amino sugars and muramic acid are suitable biomarkers to trace bacterial, fungal, and actinomycetal residues in soil. For this aim, we investigated the pattern, amounts, and dynamics of three amino sugars (glucosamine, mannosamine and galactosamine) and muramic acid in the total microbial biomass and selectively cultivated bacteria, fungi, and actinomycetes offive different soils amended with and without glucose. Our results revealed that total amino sugar and muramic acid concentrations in microbial biomass, extracted from soil after chloroform fumigation varied between 1 and 27 mg kg21 soil. In all soils investigated, glucose addition resulted in a 50–360% increase of these values. In reference to soil microbial biomass-C, the total amino sugar- and muramic acid-C concentrations ranged from 1–71 g C kg21 biomass-C. After an initial lag phase, the cultivated microbes revealed similar amino sugar concentrations of about 35, 27 and 17 g glucosamine-C kg21 TOC in bacteria, fungi, and actinomycetes, respectively. -
Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20®
Review INES SLIM (MD)1, HOUDA TAJOURI (MD)1, DENIS BARRITAULT (PHD)2,3, MAHA KACEM NJAH (MD)1, KOUSSAY ACH (MD)1, MOLKA CHADLI CHAIEB MD1, LARBI CHAIEB (MD)1 1. Endocrinology and Diabetology Department, Farhat Hached University Hospital, Ibn Jazzar Street, 4000, Sousse, Tunisia. 2. OTR3, 4 Rue Française, 75001 Paris, France. 3. Laboratoire CRRET , CNRS UMR 7149 Sciences Faculty, Paris Est Créteil University, 94000 Créteil, France. Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20® Abstract We evaluated whether matrix protection therapy by CACIPLIQ20® promotes healing of chronic lower extremity wounds in diabetic patients. Ten diabetic patients with non-infected chronic skin wounds and with no evidence of healing were inclu- ded. CACIPLIQ20® was applied topically twice a week for 5 minutes for up to 10 weeks. Wound surface area was measured at baseline then weekly during treatment. Wound closure, defined as complete reepithelialization, was the primary end- point. Mean wound surface area decreased by 25% within the first week (p=0.021 vs. baseline) and by 47% after 4 weeks (p=0.001 vs. baseline). After 10 weeks, the wound was closed in 6 of the 10 patients and decreased over 80% in the other patients. Subsequently, the none healed patients returned to standard care. Six months later, complete wound healing was noted in one additional patient and no further change in the remaining 3 patients. Two patients were again treated with CACI- PLIQ20® for one month: one healed, the other improved again by 50%. Nine months later, closed ulcers did not re-open. -
Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics
International Journal of Molecular Sciences Article Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics Elizabeth K. Whitmore 1,2 , Devon Martin 1,2 and Olgun Guvench 1,2,* 1 Department of Pharmaceutical Sciences and Administration, University of New England School of Pharmacy, 716 Stevens Avenue, Portland, ME 04103, USA; [email protected] (E.K.W.); [email protected] (D.M.) 2 Graduate School of Biomedical Science and Engineering, University of Maine, 5775 Stodder Hall, Orono, ME 04469, USA * Correspondence: [email protected]; Tel.: +1-207-221-4171 Received: 10 September 2020; Accepted: 15 October 2020; Published: 18 October 2020 Abstract: Glycosaminoglycans (GAGs) are the linear carbohydrate components of proteoglycans (PGs) and are key mediators in the bioactivity of PGs in animal tissue. GAGs are heterogeneous, conformationally complex, and polydisperse, containing up to 200 monosaccharide units. These complexities make studying GAG conformation a challenge for existing experimental and computational methods. We previously described an algorithm we developed that applies conformational parameters (i.e., all bond lengths, bond angles, and dihedral angles) from molecular dynamics (MD) simulations of nonsulfated chondroitin GAG 20-mers to construct 3-D atomic-resolution models of nonsulfated chondroitin GAGs of arbitrary length. In the current study, we applied our algorithm to other GAGs, including hyaluronan and nonsulfated forms of -
Demystifying Heparan Sulfate–Protein Interactions
UC San Diego UC San Diego Previously Published Works Title Demystifying heparan sulfate-protein interactions. Permalink https://escholarship.org/uc/item/0wj6876w Journal Annual review of biochemistry, 83(1) ISSN 0066-4154 Authors Xu, Ding Esko, Jeffrey D Publication Date 2014 DOI 10.1146/annurev-biochem-060713-035314 Peer reviewed eScholarship.org Powered by the California Digital Library University of California BI83CH06-Esko ARI 3 May 2014 10:35 Demystifying Heparan Sulfate–Protein Interactions Ding Xu and Jeffrey D. Esko Department of Cellular and Molecular Medicine, Glycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093; email: [email protected], [email protected] Annu. Rev. Biochem. 2014. 83:129–57 Keywords First published online as a Review in Advance on heparin-binding protein, glycosaminoglycan, proteoglycan, March 6, 2014 glycan–protein interaction, heparan sulfate–binding domain, The Annual Review of Biochemistry is online at oligomerization biochem.annualreviews.org Annu. Rev. Biochem. 2014.83:129-157. Downloaded from www.annualreviews.org This article’s doi: Abstract 10.1146/annurev-biochem-060713-035314 Access provided by University of California - San Diego on 06/23/20. For personal use only. Numerous proteins, including cytokines and chemokines, enzymes and Copyright c 2014 by Annual Reviews. enzyme inhibitors, extracellular matrix proteins, and membrane recep- All rights reserved tors, bind heparin. Although they are traditionally classified as heparin- binding proteins, under normal physiological conditions these proteins actually interact with the heparan sulfate chains of one or more mem- brane or extracellular proteoglycans. Thus, they are more appropriately classified as heparan sulfate–binding proteins (HSBPs). -
Glycosaminoglycans As Active Signaling Components of the Extracellular Matrix
1 Chapter 1 Glycosaminoglycans as Active Signaling Components of the Extracellular Matrix Portions of this chapter are published as: Griffin ME, Hsieh-Wilson LC. “Glycan engineering for cell and developmental biology.” Cell Chem. Biol. 2016, 23: 108-121. doi: 10.1016/j.chembiol.2015. 12.007. Review article. 2 1.1 Glycosaminoglycan Structures and Biosynthesis Carbohydrates are generally thought of as a fuel source for life. However, these molecules also function in many other roles necessary for survival including development, angiogenesis, and neuronal growth.1-5 In particular, carbohydrates at the cell surface can strongly regulate signal transduction and cellular activity. This feat is achieved in large part through their structural diversity, which allows them to selectively bind to a variety of different proteins and in turn modulate their functions. Unsurprisingly, the dysregulation of cell-surface carbohydrate production and presentation can contribute to a variety of diseases including inflammation and cancer progression.6, 7 Therefore, discovering relationships between the chemical structures of carbohydrates, the proteins to which they bind, and the resulting biological functions is critical both for the basic understanding of many physiological processes and for the prevention and treatment of various pathologies. Cell-surface carbohydrates exist in a variety of forms and are classified based on their overall size, membrane anchor, monosaccharide composition, glycosidic connections, and further modifications of the monosaccharide