Heparin/Heparan Sulfate Proteoglycans Glycomic Interactome in Angiogenesis: Biological Implications and Therapeutical Use
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Emerging Views of Heparan Sulfate Glycosaminoglycan Structure
chain contains a b-D-glucosamine linked to an uronic acid, which can be one of two C5 epimers, either a-L-iduronic or b-D-glucuronic acid. Other than the C5 Emerging Views of Heparan Sulfate position of the uronic acid, HLGAGs Glycosaminoglycan Structure/Activity vary in their chain length, that is, the number of disaccharide repeat units, and Relationships Modulating Dynamic degree of sulfation and acetylation of each disaccharide unit. O-sulfation of the Biological Functions disaccharide repeat can occur at the 2-O Zachary Shriver, Dongfang Liu, and Ram Sasisekharan* position of the uronic acid and the 6-O and 3-O positions of the glucosamine. Thus, for a given disaccharide unit within an HSGAG structure, each site is Heparan sulfate glycosaminoglycans (HSGAGs) are an important subset either sulfated or unsubstituted, creat- of complex polysaccharides that represent the third major class of biopoly- ing eight possible combinations. In ad- mer, along with polynucleic acids and polypeptides. However, the impor- dition, as mentioned above, there are two possibilities for the uronic acid com- tance of HSGAGs in biological processes is underappreciated because of a ponent of each disaccharide unit, that lack of effective molecular tools to correlate specific structures with func- is, either iduronic acid or glucuronic tions. Only recently have significant strides been made in understanding acid, giving rise to a total of 16 different the steps of HSGAG biosynthesis that lead to the formation of unique possible disaccharide combinations. Fi- nally, the N-position of the glucosamine structures of functional importance. Such advances now create possibili- can be sulfated, acetylated, or unsubsti- ties for intervening in numerous clinical situations, creating much-needed tuted (three possible states). -
Identification of an Alpha-1 Antitrypsin Variant with Enhanced Specificity For
www.nature.com/scientificreports OPEN Identifcation of an alpha‑1 antitrypsin variant with enhanced specifcity for factor XIa by phage display, bacterial expression, and combinatorial mutagenesis Varsha Bhakta1, Mostafa Hamada2, Amy Nouanesengsy2, Jessica Lapierre2, Darian L. Perruzza2 & William P. Shefeld1,2* Coagulation Factor XIa (FXIa) is an emerging target for antithrombotic agent development. The M358R variant of the serpin alpha‑1 antitrypsin (AAT) inhibits both FXIa and other proteases. Our aim was to enhance the specifcity of AAT M358R for FXIa. We randomized two AAT M358R phage display libraries at reactive centre loop positions P13‑P8 and P7‑P3 and biopanned them with FXIa. A bacterial expression library randomized at P2′‑P3′ was also probed. Resulting novel variants were expressed as recombinant proteins in E. coli and their kinetics of FXIa inhibition determined. The most potent FXIa‑inhibitory motifs were: P13‑P8, HASTGQ; P7‑P3, CLEVE; and P2‑P3′, PRSTE (respectively, novel residues bolded). Selectivity for FXIa over thrombin was increased up to 34‑fold versus AAT M358R for these single motif variants. Combining CLEVE and PRSTE motifs in AAT‑RC increased FXIa selectivity for thrombin, factors XIIa, Xa, activated protein C, and kallikrein by 279‑, 143‑, 63‑, 58‑, and 36‑fold, respectively, versus AAT M358R. AAT‑RC lengthened human plasma clotting times less than AAT M358R. AAT‑RC rapidly and selectively inhibits FXIa and is worthy of testing in vivo. AAT specifcity can be focused on one target protease by selection in phage and bacterial systems coupled with combinatorial mutagenesis. Trombosis, the blockage of intact blood vessels by occlusive clots, continues to impose a heavy clinical burden, and is responsible for one quarter of deaths world-wide1. -
Early Acute Microvascular Kidney Transplant Rejection in The
CLINICAL RESEARCH www.jasn.org Early Acute Microvascular Kidney Transplant Rejection in the Absence of Anti-HLA Antibodies Is Associated with Preformed IgG Antibodies against Diverse Glomerular Endothelial Cell Antigens Marianne Delville,1,2,3 Baptiste Lamarthée,4 Sylvain Pagie,5,6 Sarah B. See ,7 Marion Rabant,3,8 Carole Burger,3 Philippe Gatault ,9,10 Magali Giral,11 Olivier Thaunat,12,13,14 Nadia Arzouk,15 Alexandre Hertig,16,17 Marc Hazzan,18,19,20 Marie Matignon,21,22,23 Christophe Mariat,24,25 Sophie Caillard,26,27 Nassim Kamar,28,29 Johnny Sayegh,30,31 Pierre-François Westeel,32 Cyril Garrouste,33 Marc Ladrière,34 Vincent Vuiblet,35 Joseph Rivalan,36 Pierre Merville,37,38,39 Dominique Bertrand,40 Alain Le Moine,41,42 Jean Paul Duong Van Huyen,3,8 Anne Cesbron,43 Nicolas Cagnard,3,44 Olivier Alibeu,3,45 Simon C. Satchell,46 Christophe Legendre,3,4,47 Emmanuel Zorn,7 Jean-Luc Taupin,48,49,50 Béatrice Charreau,5,6 and Dany Anglicheau 3,4,47 Due to the number of contributing authors, the affiliations are listed at the end of this article. ABSTRACT Background Although anti-HLA antibodies (Abs) cause most antibody-mediated rejections of renal allo- grafts, non-anti–HLA Abs have also been postulated to contribute. A better understanding of such Abs in rejection is needed. Methods We conducted a nationwide study to identify kidney transplant recipients without anti-HLA donor-specific Abs who experienced acute graft dysfunction within 3 months after transplantation and showed evidence of microvascular injury, called acute microvascular rejection (AMVR). -
Role of Sulfs in Colorectal Cancer Cells Original Article Enhanced
Author Manuscript Published OnlineFirst on December 4, 2014; DOI: 10.1158/1541-7786.MCR-14-0372 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Running Title: Role of SULFs in colorectal cancer cells Original Article Enhanced Tumorigenic Potential of Colorectal Cancer Cells by Extracellular Sulfatases Carolina M Vicente1, Marcelo A Lima1,2, Edwin A Yates2,1, Helena B Nader1, Leny Toma1* 1Disciplina de Biologia Molecular, Departamento de Bioquímica, Universidade Federal de São Paulo, UNIFESP, Brazil 2Institute of Integrative Biology, Department of Biochemistry, University of Liverpool, Liverpool, UK *Corresponding author: Leny Toma, Disciplina de Biologia Molecular, Universidade Federal de São Paulo, UNIFESP, Rua Três de Maio, 100 – 4º andar, Vila Clementino, CEP 04044-020, São Paulo, SP, Brazil. E-mail: [email protected], [email protected], Tel (+55) (11) 55793175; FAX (+55) (11) 55736407. Disclosure of Potential Conflicts of Interest No potential conflicts of interest were disclosed by the authors. Downloaded from mcr.aacrjournals.org on September 24, 2021. © 2014 American Association for Cancer Research. Author Manuscript Published OnlineFirst on December 4, 2014; DOI: 10.1158/1541-7786.MCR-14-0372 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Abstract Heparan sulfate endosulfatase-1 and -2 (SULF1 and SULF2) are two important extracellular 6-O-endosulfatases that remove 6-O sulfate groups of N-glucosamine along heparan sulfate (HS) proteoglycan chains often found in the extracellular matrix (ECM). The HS sulfation pattern influences signaling events at the cell surface, which are critical for interactions with growth factors and their receptors. -
Antimicrobial Glycoconjugate Vaccines: an Overview of Classic and Modern Approaches Cite This: Chem
Chem Soc Rev View Article Online TUTORIAL REVIEW View Journal | View Issue Antimicrobial glycoconjugate vaccines: an overview of classic and modern approaches Cite this: Chem. Soc. Rev., 2018, 47, 9015 for protein modification Francesco Berti * and Roberto Adamo * Glycoconjugate vaccines obtained by chemical linkage of a carbohydrate antigen to a protein are part of routine vaccinations in many countries. Licensed antimicrobial glycan–protein conjugate vaccines are obtained by random conjugation of native or sized polysaccharides to lysine, aspartic or glutamic amino acid residues that are generally abundantly exposed on the protein surface. In the last few years, the structural approaches for the definition of the polysaccharide portion (epitope) responsible for the immunological activity has shown potential to aid a deeper understanding of the mode of action of glycoconjugates and to lead to the rational design of more efficacious and safer vaccines. The combination of technologies to obtain more defined carbohydrate antigens of higher purity and novel approaches for Creative Commons Attribution-NonCommercial 3.0 Unported Licence. Received 12th June 2018 protein modification has a fundamental role. In particular, methods for site selective glycoconjugation like DOI: 10.1039/c8cs00495a chemical or enzymatic modification of specific amino acid residues, incorporation of unnatural amino acids and glycoengineering, are rapidly evolving. Here we discuss the state of the art of protein engineering with rsc.li/chem-soc-rev carbohydrates to obtain glycococonjugates vaccines and future perspectives. Key learning points (a) The covalent linkage with proteins is fundamental to transform carbohydrates, which are per se T-cell independent antigens, in immunogens capable of This article is licensed under a evoking a long-lasting T-cell memory response. -
RNA Isolation and Real-Time PCR Analysis
Pleiotrophin deletion alters glucose homeostasis, energy metabolism and brown fat thermogenic function. Sevillano, Julio1#; Sánchez-Alonso, María Gracia1#; Zapatería, Begoña1; Calderón, María1; Alcalá, Martín1, Limones, María1; Pita, Jimena1; Gramage, Esther2; Vicente- Rodríguez, Marta2; Horrillo, Daniel4; Medina-Gómez, Gema4; Obregón, María Jesús5; Viana, Marta1; Valladolid-Acebes, Ismael3, Herradón, Gonzalo2, Ramos, María del Pilar1*. Affiliations 1Department of Chemistry and Biochemistry, Facultad de Farmacia, Universidad CEU San Pablo, Madrid, Spain. 2Department of Pharmaceutical and Health Sciences, Facultad de Farmacia, Universidad CEU San Pablo, Madrid, Spain. 3The Rolf Luft Research Center for Diabetes and Endocrinology, Department of Molecular Medicine and Surgery, Karolinska Institutet, 171 76, Stockholm, Sweden 4Department of Basic Sciences of Health. Universidad Rey Juan Carlos. Alcorcón. Madrid. Spain. 5Department of Endocrine and Nervous System Pathophysiology, Instituto de Investigaciones Biomédicas “Alberto Sols”, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad Autónoma de Madrid (UAM), Madrid, Spain. Keywords: Glucose homeostasis; Metabolism; Adipose tissue; Insulin resistance, Thermogenesis. *To whom correspondence should be addressed: Mª del Pilar Ramos Álvarez, PhD. Department of Chemistry and Biochemistry Facultad de Farmacia, Universidad CEU San Pablo Ctra. Boadilla del Monte km 5,3 28668, Madrid 1 +34-91-3724760 [email protected] Additional Title Page Footnotes #Co-first authors This study was supported by Spanish Ministry of Economy and Competitiveness (SAF2010-19603 and SAF2014-56671-R, SAF2012-32491, BFU2013-47384-R and BFU2016-78951-R) and Community of Madrid (S2010/BMD-2423, S2017/BMD-3864). Running Title: PLEITROPHIN AND ENERGY METABOLISM Aims/hypothesis: Pleiotrophin, a developmentally regulated and highly conserved cytokine, exerts different functions including regulation of cell growth, migration and survival. -
Pleiotrophin Is a Neurotrophic Factor for Spinal Motor Neurons
Pleiotrophin is a neurotrophic factor for spinal motor neurons Ruifa Mi, Weiran Chen, and Ahmet Ho¨ ke* Departments of Neurology and Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21287 Edited by Thomas M. Jessell, Columbia University Medical Center, New York, NY, and approved January 18, 2007 (received for review April 21, 2006) Regeneration in the peripheral nervous system is poor after chronic facial motor neurons against cell death induced by deprivation from denervation. Denervated Schwann cells act as a ‘‘transient target’’ target-derived neurotrophic support. by secreting growth factors to promote regeneration of axons but lose this ability with chronic denervation. We discovered that the Results mRNA for pleiotrophin (PTN) was highly up-regulated in acutely PTN Is Up-Regulated in Denervated Schwann Cells and Muscle After denervated distal sciatic nerves, but high levels of PTN mRNA were Axotomy. To identify candidate neurotrophic factors underlying not maintained in chronically denervated nerves. PTN protected adaptive responses to chronic nerve degeneration, we used focused spinal motor neurons against chronic excitotoxic injury and caused cDNA microarrays to investigate the gene expression of neurotro- increased outgrowth of motor axons out of the spinal cord ex- phic factors in denervated Schwann cells. In microarray experi- plants and formation of ‘‘miniventral rootlets.’’ In neonatal mice, ments, 2 and 7 days after the sciatic nerve transection, PTN mRNA PTN protected the facial motor neurons against cell death induced was up-regulated in the distal denervated segments compared with by deprivation from target-derived growth factors. Similarly, PTN the contralateral side (data not shown). To confirm the up- significantly enhanced regeneration of myelinated axons across a regulation of the PTN mRNA observed in the microarray analysis graft in the transected sciatic nerve of adult rats. -
Perlecan Antagonizes Collagen IV and ADAMTS9/GON-1 in Restricting the Growth of Presynaptic Boutons
The Journal of Neuroscience, July 30, 2014 • 34(31):10311–10324 • 10311 Development/Plasticity/Repair Perlecan Antagonizes Collagen IV and ADAMTS9/GON-1 in Restricting the Growth of Presynaptic Boutons Jianzhen Qin,1,2 Jingjing Liang,1 and X Mei Ding1 1State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China, and 2University of Chinese Academy of Sciences, Beijing 100049, China In the mature nervous system, a significant fraction of synapses are structurally stable over a long time scale. However, the mechanisms that restrict synaptic growth within a confined region are poorly understood. Here, we identified that in the C. elegans neuromuscular junction, collagens Type IV and XVIII, and the secreted metalloprotease ADAMTS/GON-1 are critical for growth restriction of presyn- apticboutons.Withoutthesecomponents,ectopicboutonsprogressivelyinvadeintothenonsynapticregion.Perlecan/UNC-52promotes the growth of ectopic boutons and functions antagonistically to collagen Type IV and GON-1 but not to collagen XVIII. The growth constraint of presynaptic boutons correlates with the integrity of the extracellular matrix basal lamina or basement membrane (BM), which surrounds chemical synapses. Fragmented BM appears in the region where ectopic boutons emerge. Further removal of UNC-52 improves the BM integrity and the tight association between BM and presynaptic boutons. Together, our results unravel the complex role of the BM in restricting the growth of presynaptic boutons and reveal the antagonistic function of perlecan on Type IV collagen and ADAMTS protein. Key words: ADAMTS9/GON-1; basement membrane; perlecan/UNC-52; presynaptic boutons; Type IV collagen/EMB-9; Type XVIII collagen/CLE-1 Introduction wider and present in the form of a basal lamina or basement Synapses are specialized intercellular junctions between neu- membrane (BM) (Palay and Chan-Palay, 1976; Burns and Au- rons or between neurons and other excitable cells. -
Hud Binds to Three AU-Rich Sequences in the 3′-UTR of Neuroserpin Mrna and Promotes the Accumulation of Neuroserpin Mrna and Protein
2202–2211 Nucleic Acids Research, 2002, Vol. 30, No. 10 © 2002 Oxford University Press HuD binds to three AU-rich sequences in the 3′-UTR of neuroserpin mRNA and promotes the accumulation of neuroserpin mRNA and protein Ana Cuadrado, Cristina Navarro-Yubero, Henry Furneaux1,JochenKinter2, Peter Sonderegger2 and Alberto Muñoz* Instituto de Investigaciones Biomédicas ‘Alberto Sols’, Consejo Superior de Investigaciones Científicas-Universidad Autónoma de Madrid, Arturo Duperier 4, E-28029 Madrid, Spain, 1Department of Physiology, University of Connecticut Health Center, Farmington, CT, USA and 2Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland Received December 30, 2001; Revised and Accepted March 18, 2002 ABSTRACT the predominant serpins are nexin-1, which is expressed in neurons and glia (3), and neuroserpin, which is mainly found in Neuroserpin is an axonally secreted serine protease neurons (4,5). Neuroserpin is well conserved, and it was first inhibitor expressed in the nervous system that purified from the ocular vitreous fluid of chicken embryos protects neurons from ischemia-induced apoptosis. (4,6). It has the typical structure of serpin family members, as Mutant neuroserpin forms have been found polymerized recently demonstrated by X-ray crystallography (7). Neuroserpin in inclusion bodies in a familial autosomal encephalo- is secreted from the neurites of neurons cultured in a compart- pathy causing dementia, or associated with epilepsy. mental system (8). In embryonic and adult mice, the expression of Regulation of neuroserpin expression is mostly neuroserpin overlaps with that of tPA (5,9), which implicates it unknown. Here we demonstrate that neuroserpin in the regulation of neural tPA activity. -
MINIREVIEW Complex Role of Matrix Metalloproteinases in Angiogen- Esis
Cell Research (1998), 8, 171-177 MINIREVIEW Complex role of matrix metalloproteinases in angiogen- esis SANG QING XIANG AMY* Biochemistry Division, Department of Chemistry, Florida State University, Tallahassee, Florida 32306-4390, USA ABSTRACT Matrix metalloproteinases (MMPs) and tissue in- hibitors of metalloproteinases (TIMPs) play a significant role in regulating angiogenesis, the process of new blood vessel formation. Interstitial collagenase (MMP-1), 72 kDa gelatinase A/type IV collagenase (MMP-2), and 92 kDa gelatinase B/type IV collagenase (MMP-9) dissolve ex- tracellular matrix (ECM) and may initiate and promote angiogenesis. TIMP-1, TIMP-2, TIMP-3, and possibly, TIMP-4 inhibit neovascularization. A new paradigm is emerging that matrilysin (MMP-7), MMP-9, and metal- loelastase (MMP-12) may block angiogenesis by convert- ing plasminogen to angiostatin, which is one of the most potent angiogenesis antagonists. MMPs and TIMPs play a complex role in regulating angiogenesis. An understanding of the biochemical and cellular pathways and mechanisms of angiogenesis will provide important information to al- low the control of angiogenesis, e.g. the stimulation of angiogenesis for coronary collateral circulation formation; while the inhibition for treating arthritis and cancer. Key word s: Collagenases, tissue inhibitors of metallo- proteinases, neovascularization, plasmino- gen angiostatin converting enzymes, ex- tracellular matrix. * Corresponding author: Professor Qing Xiang Amy Sang, Department of Chemistry, 203 Dittmer Laboratory of Chemistry Building, Florida State University, Tallahassee, Florida 32306-4390, USA Phone: (850) 644-8683 Fax: (850) 644-8281 E-mail: [email protected]. 171 MMPs in angiogenesis Significance of matrix metalloproteinases in angiogenesis Matrix metalloproteinases (MMPs) are a family of highly homologous zinc en- dopeptidases that cleave peptide bonds of the extracellular matrix (ECM) proteins, such as collagens, laminins, elastin, and fibronectin[1, 2, 3]. -
3D Distribution of Perlecan Within Intervertebral Disc Chondrons Suggests Novel Regulatory Roles for This Multifunctional Modular Heparan Sulphate Proteoglycan A.J
EuropeanAJ Hayes etCells al. and Materials Vol. 41 2021 (pages 73-89) DOI: 10.22203/eCM.v041a06 Nuclear and cytoplasmic localisation ISSN of1473-2262 perlecan 3D DISTRIBUTION OF PERLECAN WITHIN INTERVERTEBRAL DISC CHONDRONS SUGGESTS NOVEL REGULATORY ROLES FOR THIS MULTIFUNCTIONAL MODULAR HEPARAN SULPHATE PROTEOGLYCAN A.J. Hayes1 and J. Melrose2,3,4,* 1 Bioimaging Research Hub, Cardiff School of Biosciences, Cardiff University, Cardiff CF10 3AX, Wales, UK 2 Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia 3 Raymond Purves Bone and Joint Research Laboratories, Kolling Institute of Medical Research, Royal North Shore Hospital and The Faculty of Medicine and Health, The University of Sydney, St. Leonards, NSW 2065, Australia 4 Sydney Medical School, Northern, Sydney University, Royal North Shore Hospital, St. Leonards, NSW 2065, Australia Abstract Perlecan is a modular, multifunctional heparan sulphate-proteoglycan (HS-PG) that is present in the pericellular and wider extracellular matrix of connective tissues. In the present study, confocal microscopy was used to study perlecan distribution within intervertebral disc chondrons. Perlecan immunolabel was demonstrated intracellularly and in close association with the cell nucleus within chondrons of both the annulus fibrosus (AF) and nucleus pulposus (NP). This observation is consistent with earlier studies that have localised HS-PGs with nuclear cytoskeletal components. Nuclear HS-PGs have been proposed to transport fibroblast growth factor (FGF)-1, FGF-2 and FGFR-1 into the cell nucleus, influencing cell proliferation and the cell-cycle. Perlecan has well-known interactive properties with FGF family members in the pericellular and extracellular matrix. Perinuclear perlecan may also participate in translocation events with FGFs. -
Gene Section Review
Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL INIST -CNRS Gene Section Review SULF1 (sulfatase 1) Jérôme Moreaux INSERM U1040, institut de recherche en biotherapie, CHRU Saint Eloi, 80 Av Augustain Fliche, 34295 Montpellier CEDEX 5, France (JM) Published in Atlas Database: March 2012 Online updated version : http://AtlasGeneticsOncology.org/Genes/SULF1ID44378ch8q13.html DOI: 10.4267/2042/47490 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2012 Atlas of Genetics and Cytogenetics in Oncology and Haematology - Homo sapiens sulfatase 1 (SULF1), transcript variant Identity 3, mRNA, 5710 bp Other names: HSULF-1, SULF-1 Accession: NM_015170.2 GI: 189571635 HGNC (Hugo): SULF1 - Homo sapiens sulfatase 1 (SULF1), transcript variant 4, mRNA, 5548 bp Location: 8q13.2 Accession: NM_001128204.1 GI: 189571637 DNA/RNA Protein Note Note The sulfation pattern of heparan sulfate chains Sulfs are sulfatases that edit the sulfation status of influences signaling events mediated by heparan sulfate heparan sulfate proteoglycans on the outside of cells proteoglycans located on cell surface. SULF1 is an and regulate a number of critical signaling pathways. endosulfatase able to cleave specific 6-O sulfate groups The Sulfs are dysregulated in many cancers. within the heparan chains. The Sulfs are synthesized as pre-proproteins. This action can modulate signaling processes, The signal sequence is removed and the pro-protein is modulating the effects of heparan sulfate by altering cleaved by a furin-type proteinase. binding sites for signaling molecules. Sulfs mature proteins are secreted as well as retained Description on the cell surface.