bioRxiv preprint doi: https://doi.org/10.1101/2020.12.01.406181; this version posted December 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Strong Selective Agents Determine Resistance Evolution in a Multidrug Therapeutic Regime Authors: Johannes Cairns1,2*, Florian Borse1, Tommi Mononen1, Teppo Hiltunen2,3*, Ville Mustonen1,4*. 5 Affiliations: 1Organismal and Evolutionary Biology Research Programme (OEB), Department of Computer Science, 00014 University of Helsinki, Helsinki, Finland. 2Department of Microbiology, 00014 University of Helsinki, Helsinki, Finland. 3Department of Biology, 20014 University of Turku, Turku, Finland. 10 4Helsinki Institute for Information Technology, Institute of Biotechnology, 00014 University of Helsinki, Helsinki, Finland. *Correspondence to:
[email protected] or
[email protected] or v.mustonen@hel- sinki.fi. ORCIDs: JC, 0000-0003-1329-2025; FB, 0000-0003-4232-257X; TM, 0000-0002-3603-0813; 15 TH, 0000-0001-7206-2399; VM, 0000-0002-7270-1792. Abstract: Multidrug regimes have been considered to constrain selection for resistance compared to monotherapy. However, drug resistance trajectories are influenced by a wide range of conditions which can cause opposing outcomes. Here we employed an in vitro model system to investigate differences in resistance dynamics between mono-, combination and alternating regimes. Across 20 regimes involving three drugs and phage, selection for resistance was decreased in multidrug re- gimes compared to monotherapy. Surprisingly, across regimes, two out of the four agents used to impose selection had a dominant effect on the overall outcome. Resistance to these agents either caused cross-resistance or obscured the phenotypic effect of other resistance mutations.