Coprophilous Fungi from the Greek Aegean Islands
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University of California Santa Cruz Responding to An
UNIVERSITY OF CALIFORNIA SANTA CRUZ RESPONDING TO AN EMERGENT PLANT PEST-PATHOGEN COMPLEX ACROSS SOCIAL-ECOLOGICAL SCALES A dissertation submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL STUDIES with an emphasis in ECOLOGY AND EVOLUTIONARY BIOLOGY by Shannon Colleen Lynch December 2020 The Dissertation of Shannon Colleen Lynch is approved: Professor Gregory S. Gilbert, chair Professor Stacy M. Philpott Professor Andrew Szasz Professor Ingrid M. Parker Quentin Williams Acting Vice Provost and Dean of Graduate Studies Copyright © by Shannon Colleen Lynch 2020 TABLE OF CONTENTS List of Tables iv List of Figures vii Abstract x Dedication xiii Acknowledgements xiv Chapter 1 – Introduction 1 References 10 Chapter 2 – Host Evolutionary Relationships Explain 12 Tree Mortality Caused by a Generalist Pest– Pathogen Complex References 38 Chapter 3 – Microbiome Variation Across a 66 Phylogeographic Range of Tree Hosts Affected by an Emergent Pest–Pathogen Complex References 110 Chapter 4 – On Collaborative Governance: Building Consensus on 180 Priorities to Manage Invasive Species Through Collective Action References 243 iii LIST OF TABLES Chapter 2 Table I Insect vectors and corresponding fungal pathogens causing 47 Fusarium dieback on tree hosts in California, Israel, and South Africa. Table II Phylogenetic signal for each host type measured by D statistic. 48 Table SI Native range and infested distribution of tree and shrub FD- 49 ISHB host species. Chapter 3 Table I Study site attributes. 124 Table II Mean and median richness of microbiota in wood samples 128 collected from FD-ISHB host trees. Table III Fungal endophyte-Fusarium in vitro interaction outcomes. -
Studies of Coprophilous Ascomycetes in Kenya – Ascobolus Species from Wildlife Dung
Current Research in Environmental & Applied Mycology Doi 10.5943/cream/2/1/1 Studies of coprophilous ascomycetes in Kenya – Ascobolus species from wildlife dung Mungai PG1,2,3, Njogu JG3, Chukeatirote E1,2 and Hyde KD1,2* 1Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Biodiversity Research and Monitoring Division, Kenya Wildlife Service, P.O. Box 40241 00100 Nairobi, Kenya Mungai PG, Njogu JG, Chukeatirote E, Hyde KD 2012 – Studies of coprophilous ascomycetes in Kenya – Ascobolus species from wildlife dung. Current Research in Environmental & Applied Mycology 2(1), 1-16, Doi 10.5943/cream/2/1/1 Species of coprophilous Ascobolus were examined in a study of coprophilous fungi in different habitats and wildlife dung types from National Parks in Kenya. Dung samples were collected in the field and returned to the laboratory where they were incubated in moist chamber culture. Coprophilous Ascobolus were isolated from giraffe, impala, common zebra, African elephant dung, Cape buffalo, dikdik, hippopotamus, black rhinoceros and waterbuck dung. Six species, Ascobolus amoenus, A. bistisii, A. calesco, A. immersus, A. nairobiensis and A. tsavoensis are identified and described. Ascobolus calesco, A. amoenus and A. bistisii were the most common. Two new species, Ascobolus nairobiensis and A. tsavoensis are introduced in this paper. In addition, two others, Ascobolus bistisii and A. calesco are new records in Kenya and are described and illustrated. The diversity of coprophilous Ascobolus from wildlife dung in Kenya as deduced from this study is very high. Key words – Ascobolus amoenus – A. -
A Taxonomic Study of the Coprophilous Ascomycetes Of
Eastern Illinois University The Keep Masters Theses Student Theses & Publications 1971 A Taxonomic Study of the Coprophilous Ascomycetes of Southeastern Illinois Alan Douglas Parker Eastern Illinois University This research is a product of the graduate program in Botany at Eastern Illinois University. Find out more about the program. Recommended Citation Parker, Alan Douglas, "A Taxonomic Study of the Coprophilous Ascomycetes of Southeastern Illinois" (1971). Masters Theses. 3958. https://thekeep.eiu.edu/theses/3958 This is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. PA ER CERTIFICATE #2 f TO Graduate Degree Candidates who have written formal theses. SUBJECT: Permission to reproduce theses. Th' University Library is receiving a number of requests from other ins.litutions asking permission to reproduce dissertations for inclusion in their library holdings. Although no copyright laws are involved, we:feel that professional courtesy demands that permission be obtained frqm the author before we allow theses to be copied. Ple'ase sign one of the following statements. Bo9th Library of 'Eastern Illinois University has my permission to le�� my thesis to a reputable college or university for the purpose of copying it for inclusion in that institution's library or research hol�ings. Date Author I ��spectfully request Booth Library of Eastern Illinois University not al�pw my thesis be reproduced because � µ� 7 Date ILB1861.C57X P2381>C2/ A TAXONOMIC STUDY OF THE COPROPHILOUS ASCOMYCETES OF sou·rHEASTERN ILLINOIS (TITLE) BY ALAN DOUGLAS PARKER ...... -
Paper Format : Instruction to Authors
Proceedings of the 7th International Conference on Mushroom Biology and Mushroom Products (ICMBMP7) 2011 TAXONOMIC SIGNIFICANCE OF ANAMORPHIC CHARACTERISTICS IN THE LIFE CYCLE OF COPRINOID MUSHROOMS SUSANNA M. BADALYAN1, MÓNICA NAVARRO-GONZÁLEZ2, URSULA KÜES2 1Laboratory of Fungal Biology and Biotechnology, Faculty of Biology, Yerevan State University 1 Aleg Manoogian St., 0025, Yerevan Armenia 2Georg-August-Universität Göttingen, Büsgen-Institut, Molekulare Holzbiotechnologie und technische Mykologie Büsgenweg 2, 37077 Göttingen Germany [email protected] , [email protected] , [email protected] ABSTRACT Ink cap fungi (coprinoid mushrooms) are not monophyletic and divide into Coprinellus, Coprinopsis and Parasola (all Psathyrellaceae) and Coprinus (Agaricaceae). Knowledge on morphological mycelial features and asexual reproduction modes of coprini is restricted, with Coprinopsis cinerea being the best described species. This species produces constitutively on monokaryons and light-induced on dikaryons unicellular uninucleate haploid arthroconidia (oidia) on specific aerial structures (oidiophores). The anamorphic name Hormographiella aspergillata was coined for oidia production on monokaryons. Two other Hormographiella species are described in the literature, one unknown (candelabrata) and one (verticillata) identified as Coprinellus domesticus. Another, yet sterile anamorph associated with some coprini is called Ozonium which describes the incidence of tawny-rust mycelial mats of pigmented, well septated and clampless hyphal strands as -
Fungal Cannons: Explosive Spore Discharge in the Ascomycota Frances Trail
MINIREVIEW Fungal cannons: explosive spore discharge in the Ascomycota Frances Trail Department of Plant Biology and Department of Plant Pathology, Michigan State University, East Lansing, MI, USA Correspondence: Frances Trail, Department Abstract Downloaded from https://academic.oup.com/femsle/article/276/1/12/593867 by guest on 24 September 2021 of Plant Biology, Michigan State University, East Lansing, MI 48824, USA. Tel.: 11 517 The ascomycetous fungi produce prodigious amounts of spores through both 432 2939; fax: 11 517 353 1926; asexual and sexual reproduction. Their sexual spores (ascospores) develop within e-mail: [email protected] tubular sacs called asci that act as small water cannons and expel the spores into the air. Dispersal of spores by forcible discharge is important for dissemination of Received 15 June 2007; revised 28 July 2007; many fungal plant diseases and for the dispersal of many saprophytic fungi. The accepted 30 July 2007. mechanism has long been thought to be driven by turgor pressure within the First published online 3 September 2007. extending ascus; however, relatively little genetic and physiological work has been carried out on the mechanism. Recent studies have measured the pressures within DOI:10.1111/j.1574-6968.2007.00900.x the ascus and quantified the components of the ascus epiplasmic fluid that contribute to the osmotic potential. Few species have been examined in detail, Editor: Richard Staples but the results indicate diversity in ascus function that reflects ascus size, fruiting Keywords body type, and the niche of the particular species. ascus; ascospore; turgor pressure; perithecium; apothecium. 2 and 3). Each subphylum contains members that forcibly Introduction discharge their spores. -
Ascobolus Gomayapriya: a New Coprophilous Fungus from Andaman Islands, India
Studies in Fungi 3(1): 73–78 (2018) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/3/1/9 Copyright © Institute of Animal Science, Chinese Academy of Agricultural Sciences Ascobolus gomayapriya: A new coprophilous fungus from Andaman Islands, India Niranjan M and Sarma VV* Department of Biotechnology, Pondicherry University, Kalapet, Pondicherry-605014, India. Niranjan M, Sarma VV 2018 – Ascobolus gomayapriya: A new coprophilous fungus from Andaman Islands, India. Studies in Fungi 3(1), 73–78, Doi 10.5943/sif/3/1/9 Abstract Ascobolus is a very large genus among coprophilous fungi colonizing dung. There are very few workers who have explored dung fungi from India. During a recent trip to Andaman Islands, examination of cow dung samples revealed a new coprophilous fungus in the genus Ascobolus and the same has been reported in this paper. The present new species A. gomayapriya colonizes and grows on cow dung. A. gomayapriya is characterized by stalked, light-greenish-yellow apothecial ascomata, long cylindrical, short pedicellate asci with rounded apical caps, positive bluing reaction to Lougal’s reagent, ascospores that are hyaline to pale yellow red, smooth, cylindrical, thick- walled with two layers, sparsely dotted verruculose surface, very thin crevices. Key words – Ascomycetes – Dung fungi – Pezizomycetidae – Pezizales – Taxonomy Introduction Coprophilous fungi are an important part of the wildlife ecosystems as they help in recycling nutrients in animal dung in a saprophytic mode (Richardson 2001). Together with protozoa, myxomycetes, bacteria, nematodes and many insects, fungi are responsible for the breakdown of animal faeces, and for recycling the nutrients they contain. These are specialized fungi, able to withstand, and in many cases are dependent on, passage through an animal’s gut before growing on the dung (Richardson 2003). -
Checklist of the Argentine Agaricales 2. Coprinaceae and Strophariaceae
Checklist of the Argentine Agaricales 2. Coprinaceae and Strophariaceae 1 2* N. NIVEIRO & E. ALBERTÓ 1Instituto de Botánica del Nordeste (UNNE-CONICET). Sargento Cabral 2131, CC 209 Corrientes Capital, CP 3400, Argentina 2Instituto de Investigaciones Biotecnológicas (UNSAM-CONICET) Intendente Marino Km 8.200, Chascomús, Buenos Aires, CP 7130, Argentina *CORRESPONDENCE TO: [email protected] ABSTRACT—A checklist of species belonging to the families Coprinaceae and Strophariaceae was made for Argentina. The list includes all species published till year 2011. Twenty-one genera and 251 species were recorded, 121 species from the family Coprinaceae and 130 from Strophariaceae. KEY WORDS—Agaricomycetes, Coprinus, Psathyrella, Psilocybe, Stropharia Introduction This is the second checklist of the Argentine Agaricales. Previous one considered the families Amanitaceae, Pluteaceae and Hygrophoraceae (Niveiro & Albertó, 2012). Argentina is located in southern South America, between 21° and 55° S and 53° and 73° W, covering 3.7 million of km². Due to the large size of the country, Argentina has a wide variety of climates (Niveiro & Albertó, 2012). The incidence of moist winds coming from the oceans, the Atlantic in the north and the Pacific in the south, together with different soil types, make possible the existence of many types of vegetation adapted to different climatic conditions (Brown et al., 2006). Mycologists who studied the Agaricales from Argentina during the last century were reviewed by Niveiro & Albertó (2012). It is considered that the knowledge of the group is still incomplete, since many geographic areas in Argentina have not been studied as yet. The checklist provided here establishes a baseline of knowledge about the diversity of species described from Coprinaceae and Strophariaceae families in Argentina, and serves as a resource for future studies of mushroom biodiversity. -
The Mechanism of Ascus Firing
fungal biology reviews 28 (2014) 70e76 journal homepage: www.elsevier.com/locate/fbr Review The mechanism of ascus firing e Merging biophysical and mycological viewpoints Frances TRAILa,*, Agnese SEMINARAb aDepartment of Plant Biology, Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA bCNRS, Laboratoire de physique de la matiere condensee, Parc Valrose, 06108, Nice, France article info abstract Article history: The actively discharging ascus is the unique spore-bearing cell that is responsible to Received 4 November 2012 dispatch spores into the atmosphere. From a physical perspective, this type of ascus is a Received in revised form sophisticated pressure gun that reliably discharges the spores at an extremely high veloc- 19 March 2014 ity, without breaking apart. We identify four essential steps in discharge of spores whose Accepted 17 July 2014 order and timing may vary across species. First, asci that fire are mature, so a cue must be present that prevents discharge of immature spores and signals maturity. Second, pres- Keywords: sure within the ascus serves to propel the spores forward; therefore a mechanism should Apothecia be present to pressurize the ascus. Third, in ostiolate fruiting bodies (e.g. perithecia), the Ascospore ascus extends through an opening to fire spores into the air. The extension process is a Locule relatively unique aspect of the ascus and must be structurally facilitated. Fourth, the ascus Paraphyses must open at its tip for spore release in a controlled rupture. Here we discuss each of these Perithecia aspects in the context of understanding the process of ascus and fruiting body function. -
August 2006 Newsletter of the Mycological Society of America
Supplement to Mycologia Vol. 57(4) August 2006 Newsletter of the Mycological Society of America — In This Issue — Systematic Botany & Mycology Laboratory: Home of the U.S. National Fungus Collections Systematic Botany & Mycology Laboratory: Home By Amy Rossman of the U.S. National Fungus At present the USDA Agricultural Research Service’ Systematic Collections . 1 Botany and Mycology Laboratory (SBML) in Beltsville, Maryland, serves Myxomycetes (True Slime as the research base for five systematic mycologists plus two plant-quar- Molds): Educational Sources antine mycologists. The SBML is also the organization that maintains the for Students and Teachers U.S. National Fungus Collections with databases about plant-associated Part II . 4 fungi. The direction of the research and extent of the fungal databases has changed over the past two decades in order to meet the needs of U.S. agri- MSA Business . 6 culture. This invited feature article will present an overview of the U.S. MSA Abstracts . 11 National Fungus Collections, the world’s largest fungus collection, and associated databases and interactive keys available at the Web site and re- Mycological News . 41 view the research conducted by mycologists currently at SBML. Mycologist’s Bookshelf . 44 Essential to the needs of scientists at SBML and available to scientists worldwide are the mycological resources maintained at SBML. Primary Mycological Classifieds . 49 among these are the one-million specimens in the U.S. National Fungus Calender of Events . 50 Collections. Collections Manager Erin McCray ensures that these speci- mens are well-maintained and can be obtained on loan for research proj- Mycology On-Line . -
Coprophilous Ascomycetes of Northern Thailand
Current Research in Environmental & Applied Mycology Doi 10.5943/cream/1/2/2 Coprophilous ascomycetes of northern Thailand Mungai P1, 2, Hyde KD1*, Cai L3, Njogu J2 and Chukeatirote E1 1 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand. 2Kenya Wildlife Service, Biodiversity Research and Monitoring Division, Nairobi, Kenya. 3Key Laboratory of Systematic Mycology & Lichenology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China. Mungai P, Hyde KD, Cai L, Njogu J, Chukeatirote K 2011 – Coprophilous ascomycetes of northern Thailand. Current Research in Environmental & Applied Mycology 1(2), 135–159, Doi 10.5943/cream/1/2/2 The distribution and occurrence of coprophilous ascomycetes on dung of Asiatic elephant, cattle, chicken, goat and water buffalo in Chiang Rai Province, northern Thailand was investigated between March and May, 2010. A moist chamber culture method was employed. Species from eleven genera in Sordariales, Pleosporales, Pezizales, Thelebolales and Microascales were identified. Some of the species examined are new records for Thailand. The most common species were Saccobolus citrinus, Sporormiella minima, Ascobolus immersus and Cercophora kalimpongensis. Most fungal species were found on cattle dung. Chicken dung, a rarely reported substrate for coprophilous fungi, had the least fungal species. Key words – Ascobolus – Cercophora – dung types – moist chamber – Saccobolus – Sporormiella – substrate. Article Information Received 10 March 2011 Accepted 10 October 2011 Published online -
Occurrence of Coprophilous Agaricales in Italy, New Records, and Comparisons with Their European and Extraeuropean Distribution
Mycosphere Occurrence of coprophilous Agaricales in Italy, new records, and comparisons with their European and extraeuropean distribution Doveri F* Via Baciocchi 9, I-57126-Livorno [email protected] Doveri F 2010 – Occurrence of coprophilous Agaricales in Italy, new records, and comparisons with their European and extraeuropean distribution Mycosphere 1(2), 103–140. This work is the successor to a recent monograph on coprophilous ascomycetes and basidiomycetes from Italy. All Italian identifications of coprophilous Agaricales, which the author has personally studied over an 18 year period, are listed and categorized depending on the dung source. All collections were subjected to the same procedure and incubated in damp chambers and an estimate of occurrence of fungal species on various dung types is made. A second collection of Coprinus doverii is described and discussed, while the southern most finding of Panaeolus alcis is listed. An additional collection of Psilocybe subcoprophila, a species previously reported from Italy, is described and illustrated with colour photomicrographs. The morphological features of each species is briefly described, and substrate preferences compared with those reported from previous data. Key words – Coprinus doverii – damp chambers – fimicolous basidiomycetes – frequency – natural state – Panaeolus alcis – Psilocybe subcoprophila – survey. Article Information Received 25 March 2010 Accepted 21 May 2010 Published online 19 July 2010 *Corresponding author: Francesco Doveri – e-mail –[email protected] Introduction have recently been made and despite a The commencement of our systematic relatively slow increase in the numbers of studies on the dung fungi of Italy started in coprophilous basidiomycetes known from Italy 1992 resulting in Doveri (2004) and Doveri et and the inability to use field records for al. -
The Mycobiome of Symptomatic Wood of Prunus Trees in Germany
The mycobiome of symptomatic wood of Prunus trees in Germany Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Naturwissenschaftliche Fakultät I – Biowissenschaften – der Martin-Luther-Universität Halle-Wittenberg vorgelegt von Herrn Steffen Bien Geb. am 29.07.1985 in Berlin Copyright notice Chapters 2 to 4 have been published in international journals. Only the publishers and the authors have the right for publishing and using the presented data. Any re-use of the presented data requires permissions from the publishers and the authors. Content III Content Summary .................................................................................................................. IV Zusammenfassung .................................................................................................. VI Abbreviations ......................................................................................................... VIII 1 General introduction ............................................................................................. 1 1.1 Importance of fungal diseases of wood and the knowledge about the associated fungal diversity ...................................................................................... 1 1.2 Host-fungus interactions in wood and wood diseases ....................................... 2 1.3 The genus Prunus ............................................................................................. 4 1.4 Diseases and fungal communities of Prunus wood ..........................................