The Nervous and Visual Systems of Onychophorans and Tardigrades: Learning About Arthropod Evolution from Their Closest Relatives
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Analysis of Tardigrade Damage Suppressor Protein (Dsup) Expressed in Tobacco
Analysis of Tardigrade Damage Suppressor Protein (Dsup) Expressed in Tobacco by Justin Kirke A Thesis Submitted to the Faculty of The Charles E. Schmidt College of Science In Partial Fulfillment of the Requirements for the Degree of Master of Science Florida Atlantic University Boca Raton, FL December 2019 Copyright 2019 by Justin Kirke ii Abstract Author: Justin Kirke Title: Analysis of Tardigrade Damage Suppressor Protein (Dsup) Expressed in Tobacco Institution: Florida Atlantic University Thesis Advisor: Dr. Xing-Hai Zhang Degree: Master of Science Year: 2019 DNA damage is one of the most harmful stress inducers in living organisms. Studies have shown that exposure to high doses of various types of radiation cause DNA sequence changes (mutation) and disturb protein synthesis, hormone balance, leaf gas exchange and enzyme activity. Recent discovery of a protein called Damage Suppressor Protein (Dsup), found in the tardigrade species Ramazzotius varieornatus, has shown to reduce the effects of radiation damage in human cell lines. We have generated multiple lines of tobacco plants expressing the Dsup gene and preformed numerous tests to show viability and response of these transgenic plants when exposed to mutagenic chemicals, UV radiation and ionizing radiation. We have also investigated Dsup function in association to DNA damage and repair in plants by analyzing the expression of related genes using RT-qPCR. We have also analyzed DNA damage from X-ray and UV treatments using an Alkaline Comet Assay. This project has the potential to help generate plants that are tolerant to more extreme stress environments, particularly DNA damage and iv mutation, unshielded by our atmosphere. -
The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Platyhelminthes, Nemertea, and "Aschelminthes" - A
BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. III - Platyhelminthes, Nemertea, and "Aschelminthes" - A. Schmidt-Rhaesa PLATYHELMINTHES, NEMERTEA, AND “ASCHELMINTHES” A. Schmidt-Rhaesa University of Bielefeld, Germany Keywords: Platyhelminthes, Nemertea, Gnathifera, Gnathostomulida, Micrognathozoa, Rotifera, Acanthocephala, Cycliophora, Nemathelminthes, Gastrotricha, Nematoda, Nematomorpha, Priapulida, Kinorhyncha, Loricifera Contents 1. Introduction 2. General Morphology 3. Platyhelminthes, the Flatworms 4. Nemertea (Nemertini), the Ribbon Worms 5. “Aschelminthes” 5.1. Gnathifera 5.1.1. Gnathostomulida 5.1.2. Micrognathozoa (Limnognathia maerski) 5.1.3. Rotifera 5.1.4. Acanthocephala 5.1.5. Cycliophora (Symbion pandora) 5.2. Nemathelminthes 5.2.1. Gastrotricha 5.2.2. Nematoda, the Roundworms 5.2.3. Nematomorpha, the Horsehair Worms 5.2.4. Priapulida 5.2.5. Kinorhyncha 5.2.6. Loricifera Acknowledgements Glossary Bibliography Biographical Sketch Summary UNESCO – EOLSS This chapter provides information on several basal bilaterian groups: flatworms, nemerteans, Gnathifera,SAMPLE and Nemathelminthes. CHAPTERS These include species-rich taxa such as Nematoda and Platyhelminthes, and as taxa with few or even only one species, such as Micrognathozoa (Limnognathia maerski) and Cycliophora (Symbion pandora). All Acanthocephala and subgroups of Platyhelminthes and Nematoda, are parasites that often exhibit complex life cycles. Most of the taxa described are marine, but some have also invaded freshwater or the terrestrial environment. “Aschelminthes” are not a natural group, instead, two taxa have been recognized that were earlier summarized under this name. Gnathifera include taxa with a conspicuous jaw apparatus such as Gnathostomulida, Micrognathozoa, and Rotifera. Although they do not possess a jaw apparatus, Acanthocephala also belong to Gnathifera due to their epidermal structure. ©Encyclopedia of Life Support Systems (EOLSS) BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. -
Gnesiotrocha, Monogononta, Rotifera) in Thale Noi Lake, Thailand
Zootaxa 2997: 1–18 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Diversity of sessile rotifers (Gnesiotrocha, Monogononta, Rotifera) in Thale Noi Lake, Thailand PHURIPONG MEKSUWAN1, PORNSILP PHOLPUNTHIN1 & HENDRIK SEGERS2,3 1Plankton Research Unit, Department of Biology, Faculty of Science, Prince of Songkla University, Hat Yai 90112, Songkhla, Thai- land. E-mail: [email protected], [email protected] 2Freshwater Laboratory, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium. E-mail: [email protected] 3Corresponding author Abstract In response to a clear gap in knowledge on the biodiversity of sessile Gnesiotrocha rotifers at both global as well as re- gional Southeast Asian scales, we performed a study of free-living colonial and epiphytic rotifers attached to fifteen aquat- ic plant species in Thale Noi Lake, the first Ramsar site in Thailand. We identified 44 different taxa of sessile rotifers, including thirty-nine fixosessile species and three planktonic colonial species. This corresponds with about 40 % of the global sessile rotifer diversity, and is the highest alpha-diversity of the group ever recorded from a single lake. The record further includes a new genus, Lacinularoides n. gen., containing a single species L. coloniensis (Colledge, 1918) n. comb., which is redescribed, and several possibly new species, one of which, Ptygura thalenoiensis n. spec. is formally described here. Ptygura noodti (Koste, 1972) n. comb. is relocated from Floscularia, based on observations of living specimens of this species, formerly known only from preserved, contracted specimens from the Amazon region. -
Meiofauna of the Koster-Area, Results from a Workshop at the Sven Lovén Centre for Marine Sciences (Tjärnö, Sweden)
1 Meiofauna Marina, Vol. 17, pp. 1-34, 16 tabs., March 2009 © 2009 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 1611-7557 Meiofauna of the Koster-area, results from a workshop at the Sven Lovén Centre for Marine Sciences (Tjärnö, Sweden) W. R. Willems 1, 2, *, M. Curini-Galletti3, T. J. Ferrero 4, D. Fontaneto 5, I. Heiner 6, R. Huys 4, V. N. Ivanenko7, R. M. Kristensen6, T. Kånneby 1, M. O. MacNaughton6, P. Martínez Arbizu 8, M. A. Todaro 9, W. Sterrer 10 and U. Jondelius 1 Abstract During a two-week workshop held at the Sven Lovén Centre for Marine Sciences on Tjärnö, an island on the Swedish west-coast, meiofauna was studied in a large variety of habitats using a wide range of sampling tech- niques. Almost 100 samples coming from littoral beaches, rock pools and different types of sublittoral sand- and mudflats yielded a total of 430 species, a conservative estimate. The main focus was on acoels, proseriate and rhabdocoel flatworms, rotifers, nematodes, gastrotrichs, copepods and some smaller taxa, like nemertodermatids, gnathostomulids, cycliophorans, dorvilleid polychaetes, priapulids, kinorhynchs, tardigrades and some other flatworms. As this is a preliminary report, some species still have to be positively identified and/or described, as 157 species were new for the Swedish fauna and 27 are possibly new to science. Each taxon is discussed separately and accompanied by a detailed species list. Keywords: biodiversity, species list, biogeography, faunistics 1 Department of Invertebrate Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05, Sweden; e-mail: [email protected], [email protected] 2 Research Group Biodiversity, Phylogeny and Population Studies, Centre for Environmental Sciences, Hasselt University, Campus Diepenbeek, Agoralaan, Building D, B-3590 Diepenbeek, Belgium; e-mail: [email protected] 3 Department of Zoology and Evolutionary Genetics, University of Sassari, Via F. -
An Introduction to Phylum Tardigrada - Review
Volume V, Issue V, May 2016 IJLTEMAS ISSN 2278 – 2540 An Introduction to phylum Tardigrada - Review Yashas R Devasurmutt1, Arpitha B M1* 1: R & D Centre, Department of Biotechnology, Dayananda Sagar College of Engineering, Bangalore, India 1*: Corresponding Author: Arpitha B M Abstract: Tardigrades popularly known as water bears are In cryptobiosis (extreme form of anabiosis), the metabolism is micrometazoans with four pairs of lobopod legs. They are the undetectable and the animal is known as tun in this phase. organisms which can live in extreme conditions and are known to Tuns have been known to survive very harsh environmental survive in vacuum and space without protection. Tardigardes conditions such as immersion in helium at -272° C (-458° F) survive in lichens and mosses, usually associated with water film or heating temperatures at 149° C (300° F), exposure to very on mosses, liverworts, and lichens. More species are found in high ionizing radiation and toxic chemical substances and milder environments such as meadows, ponds and lakes. They long durations without oxygen. [4] Figure 2 illustrates the are the first known species to survive in outer space. Tardigrades process of transition of the tardigrades[41]. are closely related to Arthropoda and nematodes based on their morphological and molecular analysis. The cryptobiosis of Figure 2: Transition process of Tardigrades Tardigrades have helped scientists to develop dry vaccines. They have been applied as research subjects in transplantology. Future research would help in more applications of tardigrades in the field of science. Keywords: Tardigrades, cryptobiosis, dry vaccines, Transplantology, space research I. INTRODUCTION ardigrade, a group of tiny arthropod-like animals having T four pairs of stubby legs with big claws, an oval stout body with a round back and lumbering gait. -
Diapause in Tardigrades: a Study of Factors Involved in Encystment
2296 The Journal of Experimental Biology 211, 2296-2302 Published by The Company of Biologists 2008 doi:10.1242/jeb.015131 Diapause in tardigrades: a study of factors involved in encystment Roberto Guidetti1,*, Deborah Boschini2, Tiziana Altiero2, Roberto Bertolani2 and Lorena Rebecchi2 1Department of the Museum of Paleobiology and Botanical Garden, Via Università 4, 41100, Modena, Italy and 2Department of Animal Biology, University of Modena and Reggio Emilia, Via Campi 213/D, 41100, Modena, Italy *Author for correspondence (e-mail: [email protected]) Accepted 12 May 2008 SUMMARY Stressful environmental conditions limit survival, growth and reproduction, or these conditions induce resting stages indicated as dormancy. Tardigrades represent one of the few animal phyla able to perform both forms of dormancy: quiescence and diapause. Different forms of cryptobiosis (quiescence) are widespread and well studied, while little attention has been devoted to the adaptive meaning of encystment (diapause). Our goal was to determine the environmental factors and token stimuli involved in the encystment process of tardigrades. The eutardigrade Amphibolus volubilis, a species able to produce two types of cyst (type 1 and type 2), was considered. Laboratory experiments and long-term studies on cyst dynamics of a natural population were conducted. Laboratory experiments demonstrated that active tardigrades collected in April produced mainly type 2 cysts, whereas animals collected in November produced mainly type 1 cysts, indicating that the different responses are functions of the physiological state at the time they were collected. The dynamics of the two types of cyst show opposite seasonal trends: type 2 cysts are present only during the warm season and type 1 cysts are present during the cold season. -
February 15, 2012 Chapter 34 Notes: Flatworms, Roundworms and Rotifers
February 15, 2012 Chapter 34 Notes: Flatworms, Roundworms and Rotifers Section 1 Platyhelminthes Section 2 Nematoda and Rotifera 34-1 Objectives Summarize the distinguishing characteristics of flatworms. Describe the anatomy of a planarian. Compare free-living and parasitic flatworms. Diagram the life cycle of a fluke. Describe the life cycle of a tapeworm. Structure and Function of Flatworms · The phylum Platyhelminthes includes organisms called flatworms. · They are more complex than sponges but are the simplest animals with bilateral symmetry. · Their bodies develop from three germ layers: · ectoderm · mesoderm · endoderm · They are acoelomates with dorsoventrally flattened bodies. · They exhibit cephalization. · The classification of Platyhelminthes has undergone many recent changes. Characteristics of Flatworms February 15, 2012 Class Turbellaria · The majority of species in the class Turbellaria live in the ocean. · The most familiar turbellarians are the freshwater planarians of the genus Dugesia. · Planarians have a spade-shaped anterior end and a tapered posterior end. Class Turbellaria Continued Digestion and Excretion in Planarians · Planarians feed on decaying plant or animal matter and smaller organisms. · Food is ingested through the pharynx. · Planarians eliminate excess water through a network of excretory tubules. · Each tubule is connected to several flame cells. · The water is transported through the tubules and excreted from pores on the body surface. Class Turbellaria Continued Neural Control in Planarians · The planarian nervous system is more complex than the nerve net of cnidarians. · The cerebral ganglia serve as a simple brain. · A planarian’s nervous system gives it the ability to learn. · Planarians sense light with eyespots. · Other sensory cells respond to touch, water currents, and chemicals in the environment. -
Onychophora, Peripatidae) Feeding on a Theraphosid Spider (Araneae, Theraphosidae)
2009. The Journal of Arachnology 37:116–117 SHORT COMMUNICATION First record of an onychophoran (Onychophora, Peripatidae) feeding on a theraphosid spider (Araneae, Theraphosidae) Sidclay C. Dias and Nancy F. Lo-Man-Hung: Museu Paraense Emı´lio Goeldi, Laborato´rio de Aracnologia, C.P. 399, 66017-970, Bele´m, Para´, Brazil. E-mail: [email protected] Abstract. A velvet worm (Peripatus sp., Peripatidae) was observed and photographed while feeding on a theraphosid spider, Hapalopus butantan (Pe´rez-Miles, 1998). The present note is the first report of an onychophoran feeding on ‘‘giant’’ spider. Keywords: Prey behavior, velvet worm, spider Onychophorans, or velvet worms, are organisms whose behavior on the floor forests (pers. obs.). Onychophorans are capable of preying remains poorly understood due to their cryptic lifestyle (New 1995) on animals their own size, although the quantity of glue used in an attack and by the fact they are rare in the Neotropics (Mcglynn & Kelley increases up to about 80% of the total capacity for larger prey (Read & 1999). Consequently reports on hitherto unknown aspects of the Hughes 1987). It may be that encounters with larger prey items, such as biology and life history of onychophorans are urgently needed. that observed by us, are more common than previously supposed. Onychophorans are almost all carnivores that prey on small invertebrates such as snails, isopods, earth worms, termites, and other ACKNOWLEDGMENTS small insects (Hamer et al. 1997). They are widely distributed in Thanks to G. Machado (USP), T.A. Gardner (Universidade southern hemisphere temperate regions and in the tropics (Reinhard Federal de Lavras), and C.A. -
Bacterial Additives That Consistently Enhance Rotifer Growth Under Synxenic Culture Conditions 1
Aquaculture 182Ž. 2000 249±260 www.elsevier.nlrlocateraqua-online Bacterial additives that consistently enhance rotifer growth under synxenic culture conditions 1. Evaluation of commercial products and pure isolates P.A. Douillet ) The UniÕersity of Texas at Austin, Marine Science Institute, 1300 Port Street, Port Aransas, TX 78373, USA Accepted 20 July 1999 Abstract Axenic rotifers Ž.Brachionus plicatilis MullerÈ were cultured under aseptic conditions; they were fed either a bacteria-free artificial dietŽ. AD , or axenic Isochrysis galbana, or a combination of axenic Chlorella minutissima and the bacteria-free AD. The medium was inoculated with commercial bacterial additives or cultured strains of marine bacteria. The highest improvements in growth rateŽ. GR of rotifer populations were obtained with laboratory grown bacteria. Addition of an Alteromonas strain and an unidentified Gram negative strainŽ. B3 consistently enhanced rotifer GR in all experiments, and under all feeding regimes in comparison with control cultures inoculated with microbial communities present in seawater, or maintained bacteria-free. None of the other isolates or commercial products were consistent in their enhancement of rotifer production. q 2000 Elsevier Science B.V. All rights reserved. Keywords: Rotifer; Brachionus plicatilis; Isochrysis galbana 1. Introduction The rotifer Brachionus plicatilis has become a valuable and, in many cases indis- pensable, food organism for first feeding of a large variety of cultured marine finfish and crustacean larvaeŽ. Watanabe et al., 1983; Lubzens et al., 1997 . However, suppressed ) 1692 Houghton Ct North, Dunwoody, GA 30338, USA. Tel.: q1-770-671-9393; E-mail: philippe± [email protected] 0044-8486r00r$ - see front matter q 2000 Elsevier Science B.V. -
The Early Amber Caught the Wormª a 100 Million-Year-Old Onychophoran Reveals Past Migrations
The early amber caught the wormª A 100 million-year-old onychophoran reveals past migrations The split of the supercontinent Pangaea into southern Gondwana and northern Laurasia divided the fauna of these two regions. Therefore, the present-day occurrence of supposedly Gondwanan organisms in Laurasian-derived regions remains a puzzle of palaeobiogeographical history. We studied the oldest amber-embedded species of velvet worms (Onychophora) in order to illuminate the colonisation of Southeast Asia by Gondwanan lineages of these animals. Our results indicate that an early Eurogondwanan migration is the most likely scenario for Onychophora, while an ‘Out-of-India’ colonisation of Southeast Asia would instead be incompatible with the age of the amber fossil studied. This suggests a recent colonisation of India by onychophorans and refutes their Gondwanan relict status in this region. Burmese amber from Myanmar is known not only for its hypothesis recently named the Eurogondwana model [4]. physical beauty but also for preserving one of the richest Alternatively, since onychophorans are poor dispersers, it palaeobiota in the world, being arguably the most relevant was proposed that the Indian subcontinent acted as a raft fossil resin for studying terrestrial diversity during the mid- during its northward drift and brought Gondwanan species of Cretaceous period, approximately 100 million years ago [1]. Peripatidae to Southeast Asia after the so-called ‘India–Asia Among the most consequential organisms found in Burmese collision’, a biogeographical model commonly called ‘Out– amber is the oldest amber-embedded representative of of–India’ [5]. Accordingly, the only onychophoran species Onychophora — a small group of soft-bodied, terrestrial reported from India, Typhloperipatus williamsoni [6], is invertebrates pivotal for understanding animal evolution and putatively described as being a Gondwanan relict that survived biogeography. -
Metazoa Based on How Organized They Are
BIOLOGY 18: Phyla of the “Changed Animals” Climbing the evolutionary lad- der from the protozoa we find higher levels of organization. Organisms are grouped into mesozoa and metazoa based on how organized they are. The simplest multicellular organisms (those having many cells) are the me- sozoa (“middle animals”). These or- ganisms are simple parasitic worms. Parasitic means that they live at the expense of some other organism. They often suck nutrient-rich fluids right out of the other organism, but they don’t usually kill the organism or they lose their source of food. The metazoa, meaning “changed animals” can be larger in size because they have different kinds of cells that work together to bring things in, take things out, protect the whole organ- ism, and perform other duties that enable them to live in a wider range of habitats. Because of the various cell types, organisms at this level be- gin taking on a variety of shapes that are not possible among colonies of identical cells. The metazoa include all other phyla of animals from the simple to the complex. A strawberry sponge of the phylum Porifera. Kingdom Animalia: Metazoa Kingdom Porifera Coelenterata Ctenophora Platyhelminthes Rhinochocoela Nematoda Acanthocephala Chaetognatha Nematomorpha Hemichordata (sponges) (flat worms) (proboscis, (round (spiny-headed (arrow (horsehair (acorn worms) nemertine & worms) worms) worms) worms) Phylum ribbon worms) 186 BIOLOGY The next set of organisms in terms of their simplicity is the phylum Porifera—the sponges. There are many types of these animals that live in the sea and a few that live in fresh water.