Pharmaceutical Compositions Comprising Hydroxychloroquine (HCQ), Curcumin, Piperine/ Bioperine and Uses Thereof in the Medical Field
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GENETICS and GENOMICS Ed
GENETICS AND GENOMICS Ed. Csaba Szalai, PhD GENETICS AND GENOMICS Editor: Csaba Szalai, PhD, university professor Authors: Chapter 1: Valéria László Chapter 2, 3, 4, 6, 7: Sára Tóth Chapter 5: Erna Pap Chapter 8, 9, 10, 11, 12, 13, 14: Csaba Szalai Chapter 15: András Falus and Ferenc Oberfrank Keywords: Mitosis, meiosis, mutations, cytogenetics, epigenetics, Mendelian inheritance, genetics of sex, developmental genetics, stem cell biology, oncogenetics, immunogenetics, human genomics, genomics of complex diseases, genomic methods, population genetics, evolution genetics, pharmacogenomics, nutrigenetics, gene environmental interaction, systems biology, bioethics. Summary The book contains the substance of the lectures and partly of the practices of the subject of ‘Genetics and Genomics’ held in Semmelweis University for medical, pharmacological and dental students. The book does not contain basic genetics and molecular biology, but rather topics from human genetics mainly from medical point of views. Some of the 15 chapters deal with medical genetics, but the chapters also introduce to the basic knowledge of cell division, cytogenetics, epigenetics, developmental genetics, stem cell biology, oncogenetics, immunogenetics, population genetics, evolution genetics, nutrigenetics, and to a relative new subject, the human genomics and its applications for the study of the genomic background of complex diseases, pharmacogenomics and for the investigation of the genome environmental interactions. As genomics belongs to sytems biology, a chapter introduces to basic terms of systems biology, and concentrating on diseases, some examples of the application and utilization of this scientific field are also be shown. The modern human genetics can also be associated with several ethical, social and legal issues. The last chapter of this book deals with these issues. -
Analyses of DNA, RNA and Protein
Analyses of DNA, RNA and Protein What are the early discoveries and technological advances that revolutionized our ability to study human inherited disease? Structure of DNA Central dogma Restriction endonucleases Recombinant DNA technology Cloning Vectors Plasmids Double stranded circular DNA origin of replication selectable marker (antibiotic resistance) 1 or more restriction cutting sites can accommodate DNA fragments 5-10kbp Bacteriophage Lambda Large 25kbp double stranded molecule. Cosmids Can accommodate up to 50kbp of DNA YACs (yeast artificial chromosome Can accommodate up to 1000kbp of DNA BACs (Bacterial artificial chromosome) Can accommodate up to 600 kbp Human genomic plasmid library Also: Phage library YAC library BAC library cDNA library in plasmid Hybridization technology Molecular techniques for Analyzing DNA Southern blotting Detection of gene deletion by Southern blotting Southern blotting can be used to detect large alterations such as Deletions duplications Translocations Point mutations if they alter a restriction enzyme cutting site Quantitative Can be used to analyze large regions of DNA Polymerase Chain Reaction PCR analyses small regions of DNA Sequence of the region must be known to generate primers Not quantitative Advantage of PCR over Southern blotting Fast Sensitive Inexpensive PCR can be used to screen for unknown mutations in small regions of DNA using a variety of approaches, for example: Single strand conformation polymorphism analysis Single strand conformation polymorphism -
PAX5 Biallelic Genomic Alterations Define a Novel Subgroup of B-Cell
Leukemia https://doi.org/10.1038/s41375-019-0430-z ARTICLE Acute lymphoblastic leukemia PAX5 biallelic genomic alterations define a novel subgroup of B-cell precursor acute lymphoblastic leukemia 1,2,3,4,5 1 3,4,6 1 1 Lorenz Bastian ● Michael P. Schroeder ● Cornelia Eckert ● Cornelia Schlee ● Jutta Ortiz Tanchez ● 1 2,7,8 1 1 Sebastian Kämpf ● Dimitrios L. Wagner ● Veronika Schulze ● Konstandina Isaakidis ● 1,3,4 5 1,3,4 9 1 Juan Lázaro-Navarro ● Sonja Hänzelmann ● Alva Rani James ● Arif Ekici ● Thomas Burmeister ● 1 10 11 3,4,12 13 Stefan Schwartz ● Martin Schrappe ● Martin Horstmann ● Sebastian Vosberg ● Stefan Krebs ● 13 14,15 3,4,12 3,4,16 5 Helmut Blum ● Jochen Hecht ● Philipp A. Greif ● Michael A. Rieger ● Monika Brüggemann ● 3,4,16 1,3,4,5 1,2,3,4,5 Nicola Gökbuget ● Martin Neumann ● Claudia D. Baldus Received: 6 September 2018 / Revised: 29 January 2019 / Accepted: 4 February 2019 © Springer Nature Limited 2019 Abstract Chromosomal rearrangements and specific aneuploidy patterns are initiating events and define subgroups in B-cell precursor acute lymphoblastic leukemia (BCP-ALL). Here we analyzed 250 BCP-ALL cases and identified a novel subgroup (‘PAX5- ’ n = fi 1234567890();,: 1234567890();,: plus , 19) by distinct DNA methylation and gene expression pro les. All patients in this subgroup harbored mutations in the B-lineage transcription factor PAX5, with p.P80R as hotspot. Mutations either affected two independent codons, consistent with compound heterozygosity, or suffered LOH predominantly through chromosome 9p aberrations. These biallelic events resulted in disruption of PAX5 transcriptional programs regulating B-cell differentiation and tumor suppressor functions. -
1 Antimalarial Activity of the 8 - Aminoquinolines Edward A
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln US Army Research U.S. Department of Defense 1991 1 Antimalarial Activity of the 8 - Aminoquinolines Edward A. Nodiff Franklin Research Center, Arvin Calspan Corporation, Valley Forge Corporate Center, Norristown, PA Sankar Chatterjee Department of Medicinal Chemistry, Division of Experimental Therapeutics, Walter Reed Army Institute of Research, Walter Reed Army Medical Center, Washington, DC Hikmat A. Musallam Department of Medicinal Chemistry, Division of Experimental Therapeutics, Walter Reed Army Institute of Research, Walter Reed Army Medical Center, Washington, DC Follow this and additional works at: http://digitalcommons.unl.edu/usarmyresearch Nodiff, Edward A.; Chatterjee, Sankar; and Musallam, Hikmat A., "1 Antimalarial Activity of the 8 - Aminoquinolines" (1991). US Army Research. 337. http://digitalcommons.unl.edu/usarmyresearch/337 This Article is brought to you for free and open access by the U.S. Department of Defense at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in US Army Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Progress in Medicinal Chemistry - Vol. 28, edited by G.P. Ellis and G.B. West 0 1991, Elsevier Science Publishers, B.V. 1 Antimalarial Activity of the 8- Aminoquinoline s EDWARD A. NODIFF, B.A. SANKAR CHATTERJEE, Ph.D. and HIKMAT A. MUSALLAM, Ph.D.2 Franklin Research Center, Arvin Calspan Corporation, Valley Forge Corporate Center, 2600 Monroe Boulevard, Norristown, PA 19403 and 'Department of Medicinal Chemistry, Division of Experimental Therapeutics, Walter Reed Army Institute of Research, Walter Reed Army Medical Center, Washington, DC 20307-5100, U.S.A. INTRODUCTION 2 THE PARASITE Exoerythrocytic phase Erythrocytic phase Sporogony THE DISEASE 4 CLASSIFICATION OF ANTIMALARIAL DRUGS 4 HISTORY 5 METHODS FOR ANTIMALARIAL DRUG EVALUATION 8 Rane blood schizontocidal screen (P. -
Current Antimalarial Therapies and Advances in the Development of Semi-Synthetic Artemisinin Derivatives
Anais da Academia Brasileira de Ciências (2018) 90(1 Suppl. 2): 1251-1271 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201820170830 www.scielo.br/aabc | www.fb.com/aabcjournal Current Antimalarial Therapies and Advances in the Development of Semi-Synthetic Artemisinin Derivatives LUIZ C.S. PINHEIRO1, LÍVIA M. FEITOSA1,2, FLÁVIA F. DA SILVEIRA1,2 and NUBIA BOECHAT1 1Fundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos Farmanguinhos, Fiocruz, Departamento de Síntese de Fármacos, Rua Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil 2Universidade Federal do Rio de Janeiro, Programa de Pós-Graduação em Química, Avenida Athos da Silveira Ramos, 149, Cidade Universitária, 21941-909 Rio de Janeiro, RJ, Brazil Manuscript received on October 17, 2017; accepted for publication on December 18, 2017 ABSTRACT According to the World Health Organization, malaria remains one of the biggest public health problems in the world. The development of resistance is a current concern, mainly because the number of safe drugs for this disease is limited. Artemisinin-based combination therapy is recommended by the World Health Organization to prevent or delay the onset of resistance. Thus, the need to obtain new drugs makes artemisinin the most widely used scaffold to obtain synthetic compounds. This review describes the drugs based on artemisinin and its derivatives, including hybrid derivatives and dimers, trimers and tetramers that contain an endoperoxide bridge. This class of compounds is of extreme importance for the discovery of new drugs to treat malaria. Key words: malaria, Plasmodium falciparum, artemisinin, hybrid. -
High Resolution Molecular Karyotyping and Proteomic Analysis in Hematological Malignancies
Universit`adegli Studi di Catania Scuola Superiore di Catania International PhD in Stem Cells XXIII cycle High resolution molecular karyotyping and proteomic analysis in hematological malignancies Alessandra Romano Coordinator of PhD: Tutor: Prof. Daniele Filippo Condorelli Prof. Francesco di Raimondo Prof. Lance Liotta Prof. Vincenza Barresi A.A. 2007/2010 Stay hard, stay hungry, stay alive: dedicated to all people helped me to work on a dream Abstract In this work we focused on two hematological malignancies to apply the trans- lational meaning of functional genomics: myelodysplastic syndrome (MDS) and its potential evolution to frank acute myeloid leukaemia, and the broad set of monoclonal gammopathies up to multiple myeloma (MM). In both diseases the recent advances obtained thanks to the application of novel therapeutic agents have enlighten the need to target at the same time both neoplastic and sur- rounding microenvironment cells. In MDS we applied the last generation of Affymetrix single nucleotide poly- morphism (SNP)/copy number aberrations (CNA) platform to distinguish so- matic and germline tumor-associated CNAs and loss of heterozigosity (LOHs) to identify possible recurring genomic abnormalities in high risk MDS evolving to AML. In particular in one patient, strictly followed in the clinical evolution from MDS to AML, we were able to define the unique features of the aberrant clone through a bioinformatic-based strategy. For MM, we developed an ex vivo assay to identify signalling associated with differential treatments of fresh bone marrow aspirate samples, confirming the unique constellation of activation in the single patient, and the general trend of a differential behavior among neoplastic and surrounding cells. -
Bortezomib Etc Multiples Myelo
bortezomib AND cyclophosphamide AND dexamethasone AND multi... https://www.ncbi.nlm.nih.gov/pubmed Back to top 11 von 11 16.04.2019, 14:13 4/18/2019 Advanced Search | Cochrane Library https://www.cochranel brary.com/de/advanced-search 2/2 SEARCH QUERY ('bortezomib'/exp OR bortezomib) AND ('cyclophosphamide'/exp OR cyclophosphamide) AND ('dexamethasone'/exp OR dexamethasone) AND ('multiple myeloma'/exp OR 'multiple myeloma') AND 'newly diagnosed' AND 'clinical trial' AND 'induction therapy' RECORD 1 Nicht betrachtet, da bereits in Pubmed-Recherche enthalten Efficacy and Safety of a Weekly Cyclophosphamide-Bortezomib-Dexamethasone Regimen as Induction Therapy Prior to Autologous Stem Cell Transplantation in Japanese Patients with Newly Diagnosed Multiple Myeloma: A Phase 2 Multicenter Trial Tanaka K., Toyota S., Akiyama M., Wakimoto N., Nakamura Y., Najima Y., Doki N., Kakihana K., Igarashi A., Kobayashi T., Ohashi K., Kudo D., Shinagawa A., Takano H., Fujio T., Okoshi Y., Hori M., Kumagai T., Saito T., Mukae J., Yamamoto K., Tsutsumi I., Komeno T., Yoshida C., Yamamoto M., Kojima H. Acta Haematologica (2019) 141:2 (111-118). Date of Publication: 1 Feb 2019 We assessed the efficacy and safety of weekly cyclophosphamide-bortezomib dexamethasone (CBD) induction prior to autologous stem cell transplantation (ASCT) in newly diagnosed Japanese patients with multiple myeloma (MM). This regimen consisted of four 28-day cycles of once-weekly oral cyclophosphamide (300 mg/m(2)), subcutaneous bortezomib (1.3 mg/m(2)), and oral dexamethasone (40 mg). Responding patients underwent stem cell collection followed by ASCT. The primary endpoint was the postinduction rate of achieving a near complete response (nCR) or better. -
Quantification of Chloroquine by LC-MS and the Macular Degeneration Disease
Universidade de Lisboa Faculdade de Farmácia Quantification of Chloroquine by LC-MS and the Macular Degeneration Disease David Miguel Cunha Pereira Mestrado Integrado em Ciências Farmacêuticas 2017 1 Universidade de Lisboa Faculdade de Farmácia Quantification of Chloroquine by LC-MS and the Macular Degeneration Disease David Miguel Cunha Pereira Monografia de Mestrado Integrado em Ciências Farmacêuticas apresentada à Universidade de Lisboa através da Faculdade de Farmácia Orientadora: Professora Doutora Isabel Ribeiro 2017 2 The work accomplished on this monograph was possible thanks to University of Eastern Finland (UEF), under Eramus+ Programme. Advisor: Professor Seppo Auriola 3 4 Abstract Age-related macular degeneration is a visual disease that involves a progressive loss of central vision which its consequences are dramatic for the patient’s quality of life. Age is a major risk factor for macular degeneration. Other risk factors include, ethnicity, genetics, smoking and drugs. Chloroquine appears to be the most toxic drug to the retina, which might be explained by the extensive accumulation and very long retention of chloroquine bound to melanin. Chloroquine is used for malarial prevention and treatment, as well to various inflammatory diseases such as rheumatoid arthritis and lupus erythematosus. Chloroquine toxicity in age-related macular degeneration is of serious ophthalmologic concern because it is not treatable. Nonetheless, it has been demonstrated that central vision can be preserved if damage is recognized before there -
Genomic Instability
10/18/16 Genomic Instability Kent Nastiuk, PhD Dept. Cancer Genetics Roswell Park Cancer Institute RPN-530 Oncology for Scientist-I October 18, 2016 Previous lecturers supplying slides/notes/inspiration • Daniel L. Stoler, Ph.D. • Bill Burhans, Ph.D. • Amin Mahpour, (almost Ph.D.?) Genomic Instability RPN-530 Oncology for Scientist-I 2 1 10/18/16 Questions/Outline • What is Genomic instability? • What factors contribute to genome integrity? • How we identify these aberrations? A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns • Notta, et al, Nature October 12, 2016 • doi:10.1038/nature19823 Genomic Instability RPN-530 Oncology for Scientist-I 3 Genomic instability • Cells maintain genome integrity and promote faithful genome propagation by: o Coordinated DNA replication o DNA-damage sensing and repair o Cell-cycle checkpoints • Most checkpoints evolutionarily conserved and are tumor suppressors Genomic Instability RPN-530 Oncology for Scientist-I 4 2 10/18/16 Genomic instability • Drives evolution at the molecular level and generates genetic variation/diversity • Specialized role in generation of variability in developmentally regulated processes o Immunoglobulin diversification • Associated with pathological disorders o Premature aging o Inherited disease o Cancer Genomic Instability RPN-530 Oncology for Scientist-I 5 Cancer • Evolution at a vastly accelerated rate with natural selection favoring the growing tumor mass over the organism. • Successive gene mutations activating oncogenes and inactivating tumor suppressors. Genomic Instability RPN-530 Oncology for Scientist-I 6 3 10/18/16 7 Genomic Instability RPN-530 Oncology for Scientist-I Early Molecular Model of Tumor Progression - Vogelstein • Hypothesis: Mutation in one gene associated with each step in progression. -
Synthesis, in Vitro Characterization and Applications of Novel 8-Aminoquinoline Fluorescent Probes Adonis Mcqueen University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School October 2017 Synthesis, in vitro Characterization and Applications of Novel 8-Aminoquinoline Fluorescent Probes Adonis McQueen University of South Florida, [email protected] Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the Medicine and Health Sciences Commons, Organic Chemistry Commons, and the Parasitology Commons Scholar Commons Citation McQueen, Adonis, "Synthesis, in vitro Characterization and Applications of Novel 8-Aminoquinoline Fluorescent Probes" (2017). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/7062 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Synthesis, in vitro Characterization and Applications of Novel 8-Aminoquinoline Fluorescent Probes by Adonis McQueen A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Molecular Medicine Department of Molecular Medicine College of Medicine University of South Florida Major Professor: Dennis E. Kyle, Ph.D. Burt Anderson, Ph.D. Yu Chen, Ph.D. Lynn Wecker, Ph.D. Date of Approval: October 13, 2017 Keywords: Malaria, Primaquine, Drug Discovery, Mechanism of Action, Parasitology, Medicinal Chemistry Copyright © 2017, Adonis McQueen ACKNOWLEDGMENTS This research is a culmination of everyone I’ve interacted with, everyone who’s taught me and everyone I’ve ever taught. I thank my Creator for allowing me to make it this far. As far as people go, I owe my first thanks to Dr. -
BP601T Medicinal Chemistry III (Theory) UNIT II Prepared By- Mrs. Sneha Kushwaha Assistant Professor Rama University Kanpur Anti
BP601T Medicinal Chemistry III (Theory) UNIT II Prepared by- Mrs. Sneha Kushwaha Assistant Professor Rama University Kanpur Unit II 10 Hours Antibiotics Historical background, Nomenclature, Stereochemistry, Structure activity relationship Chemical degradation classification and important products of the following classes Macrolide: Erythromycin, Clarithromycin, Azithromycin. Miscellaneous: Chloramphenicol*, Clindamycin. Prodrugs: Basic concepts and application of prodrug design. Antimalarials: Etiology of malaria. Quinolines: SAR, Quinine sulphate, Chloroquine*, Amodiaquine, Primaquine phosphate, Pamaquine*, Quinacrine hydrochloride, Mefloquine. Biguanides and dihydro triazines: Cycloguanil pamoate, Proguanil. Miscellaneous: Pyrimethamine, Artesunete, Artemether, Atovoquone. Antibiotics B.Pharma – 3rd Year VI Sem. UNIT II – Antibiotics By - Sneha Kushwaha (Asst. Professor) Subject – Medicinal Chemistry (BP601 T) Macrolide Antibiotics Introduction The macrolides are a class of natural products that consist of a large macrocyclic lactone ring to which one or more deoxy sugars, usually cladinose and desosamine, may be attached. The lactone rings are usually 14-, 15-, or 16-membered. Macrolides belong to the polyketide class of natural products History The first macrolide discovered was erythromycin, which was first used in 1952. Erythromycin was widely used as a substitute to penicillin in cases where patients were allergic to penicillin or had penicillin-resistant illnesses. Later macrolides developed, including azithromycin and clarithromycin, -
CYTOGENETIC BIOINFORMATICS of CHROMOSOMAL ABERRATIONS and GENETIC DISORDERS: DATA-MINING of RELEVANT BIOSTATISTICAL FEATURES By
CYTOGENETIC BIOINFORMATICS OF CHROMOSOMAL ABERRATIONS AND GENETIC DISORDERS: DATA-MINING OF RELEVANT BIOSTATISTICAL FEATURES by Jagadeshwari Karri A Thesis Submitted to the Faculty of the College of Engineering and Computer Science in Partial Fulfillment of the Requirements for the Degree of Master of Science Florida Atlantic University Boca Raton, Florida December 2012 ACKNOWLEDGMENTS This study would not have been completed without the direction and guidance from Dr. Perambur S. Neelakanta, the Committee Chairperson and thesis advisor. Dr. Neelakanta taught me how to be patient as well as he was available to provide constructive feedback regarding questions related to research, algorithms and computations. My sincere thanks are extended to him for his time and editing this thesis. I wish to thank the Committee Members, Drs. Abhijit Pandya, Mirjana Pavlovic and Dolores DeGroff for their time serving as members of the committee and providing their educated assessment to this thesis. Finally, I would like to greatly thankful to my parents, my in-law and my husband and son for their moral support, constant encouragement and enormous patience while preparing this thesis and especially for all those years of pursuing my education. iii ABSTRACT Author: Jagadeshwari Karri Title: Cytogenetic Bioinformatics of Chromosomal Aberrations and Genetic Disorders: Data-mining of Relevant Biostatistical Features Institution: Florida Atlantic University Thesis Advisor: Dr. Perambur S. Neelakanta Degree: Master of Science Year 2012 Cytogenetics is a study on the genetic considerations associated with structural and functional aspects of the cells with reference to chromosomal inclusions. Chromosomes are structures within the cells containing body’s information in the form of strings of DNA.