Ligand Field Theory
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												  CHEM 250 (4 Credits): Reactions of Nucleophiles and Electrophiles (Reactivity 1)CHEM 250 (4 credits): Reactions of Nucleophiles and Electrophiles (Reactivity 1): Description: This course investigates fundamental carbonyl reactivity (addition and substitution) in understanding organic, inorganic and biochemical processes. Some emphasis is placed on enthalpy, entropy and free energy as a basis of understanding reactivity. An understanding of chemical reactivity is based on principles of Lewis acidity and basicity. The formation, stability and reactivity of coordination complexes are included. Together, these topics lead to an understanding of biochemical pathways such as glycolysis. Enzyme regulation and inhibition is discussed in the context of thermodynamics and mechanisms. Various applications of modern multi-disciplinary research will be explored. Prerequisite: CHEM 125. Course Goals and Objectives: 1. Students will gain a qualitative understanding of thermodynamics. A. Students will develop a qualitative understanding of enthalpy and entropy. B. Students will predict the sign of an entropy change for chemical or physical processes. C. Students will understand entropy effects such as the chelate effect on chemical reactions. D. Students will use bond enthalpies or pKas to determine the enthalpy change for a reaction. E. Students will draw or interpret a reaction progress diagram. F. Students will apply the Principle of Microscopic Reversibility to understand reaction mechanisms. G. Students will use Gibbs free energy to relate enthalpy and entropy changes. H. Students will develop a qualitative understanding of progress toward equilibrium under physiological conditions (the difference between G and Go.) I. Students will understand coupled reactions and how this can be used to drive a non- spontaneous reaction toward products. J. Students will apply LeChatelier’s Principle to affect the position of anequilibrium by adding or removing reactants or products.
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												  Organic Ligand Complexation Reactions OnOrganic ligand complexation reactions on aluminium-bearing mineral surfaces studied via in-situ Multiple Internal Reflection Infrared Spectroscopy, adsorption experiments, and surface complexation modelling A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences 2010 Charalambos Assos School of Earth, Atmospheric and Environmental Sciences Table of Contents LIST OF FIGURES ......................................................................................................4 LIST OF TABLES ........................................................................................................8 ABSTRACT.................................................................................................................10 DECLARATION.........................................................................................................11 COPYRIGHT STATEMENT....................................................................................12 CHAPTER 1 INTRODUCTION ...............................................................................13 AIMS AND OBJECTIVES .................................................................................................38 CHAPTER 2 THE USE OF IR SPECTROSCOPY IN THE STUDY OF ORGANIC LIGAND SURFACE COMPLEXATION............................................40 INTRODUCTION.............................................................................................................40 METHODOLOGY ...........................................................................................................44
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												  Crystal Field Theory (CFT)Crystal Field Theory (CFT) The bonding of transition metal complexes can be explained by two approaches: crystal field theory and molecular orbital theory. Molecular orbital theory takes a covalent approach, and considers the overlap of d-orbitals with orbitals on the ligands to form molecular orbitals; this is not covered on this site. Crystal field theory takes the ionic approach and considers the ligands as point charges around a central metal positive ion, ignoring any covalent interactions. The negative charge on the ligands is repelled by electrons in the d-orbitals of the metal. The orientation of the d orbitals with respect to the ligands around the central metal ion is important, and can be used to explain why the five d-orbitals are not degenerate (= at the same energy). Whether the d orbitals point along or in between the cartesian axes determines how the orbitals are split into groups of different energies. Why is it required? The valence bond approach could not explain the Electronic spectra, Magnetic moments, Reaction mechanisms of the complexes. Assumptions of CFT: 1. The central Metal cation is surrounded by ligand which contain one or more lone pair of electrons. 2. The ionic ligand (F-, Cl- etc.) are regarded as point charges and neutral molecules (H2O, NH3 etc.) as point dipoles. 3. The electrons of ligand does not enter metal orbital. Thus there is no orbital overlap takes place. 4. The bonding between metal and ligand is purely electrostatic i.e. only ionic interaction. The approach taken uses classical potential energy equations that take into account the attractive and repulsive interactions between charged particles (that is, Coulomb's Law interactions).
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												  Nobel Lecture, 8 December 1981 by ROALD HOFFMANN Department of Chemistry, Cornell University, Ithaca, N.YBUILDING BRIDGES BETWEEN INORGANIC AND ORGANIC CHEMISTRY Nobel lecture, 8 December 1981 by ROALD HOFFMANN Department of Chemistry, Cornell University, Ithaca, N.Y. 14853 R. B. Woodward, a supreme patterner of chaos, was one of my teachers. I dedicate this lecture to him, for it is our collaboration on orbital symmetry conservation, the electronic factors which govern the course of chemical reac- tions, which is recognized by half of the 1981 Nobel Prize in Chemistry. From Woodward I learned much: the significance of the experimental stimulus to theory, the craft of constructing explanations, the importance of aesthetics in science. I will try to show you how these characteristics of chemical theory may be applied to the construction of conceptual bridges between inorganic and organic chemistry. FRAGMENTS Chains, rings, substituents - those are the building blocks of the marvelous edifice of modern organic chemistry. Any hydrocarbon may be constructed on paper from methyl groups, CH 3, methylenes, CH 2, methynes, CH, and carbon atoms, C. By substitution and the introduction of heteroatoms all of the skeletons and functional groupings imaginable, from ethane to tetrodotoxin, may be obtained. The last thirty years have witnessed a remarkable renaissance of inorganic chemistry, and the particular flowering of the field of transition metal organo- metallic chemistry. Scheme 1 shows a selection of some of the simpler creations of the laboratory in this rich and ever-growing field. Structures l-3 illustrate at a glance one remarkable feature of transition metal fragments. Here are three iron tricarbonyl complexes of organic moie- ties - cyclobutadiene, trimethylenemethane, an enol, hydroxybutadiene - which on their own would have little kinetic or thermodynamic stability.
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												  Copyrighted Material1 INTRODUCTION 1.1 WHY STUDY ORGANOMETALLIC CHEMISTRY? Organometallic chemists try to understand how organic molecules or groups interact with compounds of the inorganic elements, chiefl y metals. These elements can be divided into the main group, consisting of the s and p blocks of the periodic table, and the transition elements of the d and f blocks. Main-group organometallics, such as n -BuLi and PhB(OH)2 , have proved so useful for organic synthesis that their leading characteristics are usually extensively covered in organic chemistry courses. Here, we look instead at the transition metals because their chemistry involves the intervention of d and f orbitals that bring into play reaction pathways not readily accessible elsewhere in the periodic table. While main-group organometallics are typically stoichiometric reagents, many of their transition metal analogs are most effective when they act as catalysts. Indeed, the expanding range of applications of catalysis is a COPYRIGHTEDmajor reason for the continued MATERIAL rising interest in organo- metallics. As late as 1975, the majority of organic syntheses had no recourse to transition metals at any stage; in contrast, they now very often appear, almost always as catalysts. Catalysis is also a central prin- ciple of Green Chemistry 1 because it helps avoid the waste formation, The Organometallic Chemistry of the Transition Metals, Sixth Edition. Robert H. Crabtree. © 2014 John Wiley & Sons, Inc. Published 2014 by John Wiley & Sons, Inc. 1 2 INTRODUCTION for example, of Mg salts from Grignard reactions, that tends to accom- pany the use of stoichiometric reagents. The fi eld thus occupies the borderland between organic and inorganic chemistry.
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												  Interplay Between Gating and Block of Ligand-Gated Ion Channelsbrain sciences Review Interplay between Gating and Block of Ligand-Gated Ion Channels Matthew B. Phillips 1,2, Aparna Nigam 1 and Jon W. Johnson 1,2,* 1 Department of Neuroscience, University of Pittsburgh, Pittsburgh, PA 15260, USA; [email protected] (M.B.P.); [email protected] (A.N.) 2 Center for Neuroscience, University of Pittsburgh, Pittsburgh, PA 15260, USA * Correspondence: [email protected]; Tel.: +1-(412)-624-4295 Received: 27 October 2020; Accepted: 26 November 2020; Published: 1 December 2020 Abstract: Drugs that inhibit ion channel function by binding in the channel and preventing current flow, known as channel blockers, can be used as powerful tools for analysis of channel properties. Channel blockers are used to probe both the sophisticated structure and basic biophysical properties of ion channels. Gating, the mechanism that controls the opening and closing of ion channels, can be profoundly influenced by channel blocking drugs. Channel block and gating are reciprocally connected; gating controls access of channel blockers to their binding sites, and channel-blocking drugs can have profound and diverse effects on the rates of gating transitions and on the stability of channel open and closed states. This review synthesizes knowledge of the inherent intertwining of block and gating of excitatory ligand-gated ion channels, with a focus on the utility of channel blockers as analytic probes of ionotropic glutamate receptor channel function. Keywords: ligand-gated ion channel; channel block; channel gating; nicotinic acetylcholine receptor; ionotropic glutamate receptor; AMPA receptor; kainate receptor; NMDA receptor 1. Introduction Neuronal information processing depends on the distribution and properties of the ion channels found in neuronal membranes.
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												  Chapter 21 D-Metal Organometalloc ChemistryChapter 21 d-metal organometalloc chemistry Bonding Ligands Compounds Reactions Chapter 13 Organometallic Chemistry 13-1 Historical Background 13-2 Organic Ligands and Nomenclature 13-3 The 18-Electron Rule 13-4 Ligands in Organometallic Chemistry 13-5 Bonding Between Metal Atoms and Organic π Systems 13-6 Complexes Containing M-C, M=C, and M≡C Bonds 13-7 Spectral Analysis and Characterization of Organometallic Complexes “Inorganic Chemistry” Third Ed. Gary L. Miessler, Donald A. Tarr, 2004, Pearson Prentice Hall http://en.wikipedia.org/wiki/Expedia 13-1 Historical Background Sandwich compounds Cluster compounds 13-1 Historical Background Other examples of organometallic compounds 13-1 Historical Background Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and a metal. Organometallic chemistry combines aspects of inorganic chemistry and organic chemistry. Organometallic compounds find practical use in stoichiometric and catalytically active compounds. Electron counting is key in understanding organometallic chemistry. The 18-electron rule is helpful in predicting the stabilities of organometallic compounds. Organometallic compounds which have 18 electrons (filled s, p, and d orbitals) are relatively stable. This suggests the compound is isolable, but it can result in the compound being inert. 13-1 Historical Background In attempt to synthesize fulvalene Produced an orange solid (ferrocene) Discovery of ferrocene began the era of modern organometallic chemistry. Staggered
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												  Searching Coordination CompoundsCAS ONLINEB Available on STN Internationalm The Scientific & Technical Information Network SEARCHING COORDINATION COMPOUNDS December 1986 Chemical Abstracts Service A Division of the American Chemical Society 2540 Olentangy River Road P.O. Box 3012 Columbus, OH 43210 Copyright O 1986 American Chemical Society Quoting or copying of material from this publication for educational purposes is encouraged. providing acknowledgment is made of the source of such material. SEARCHING COORDINATION COMPOUNDS prepared by Adrienne W. Kozlowski Professor of Chemistry Central Connecticut State University while on sabbatical leave as a Visiting Educator, Chemical Abstracts Service Table of Contents Topic PKEFACE ............................s.~........................ 1 CHAPTER 1: INTRODUCTION TO SEARCHING IN CAS ONLINE ............... 1 What is Substructure Searching? ............................... 1 The Basic Commands .............................................. 2 CHAPTEK 2: INTKOOUCTION TO COORDINATION COPPOUNDS ................ 5 Definitions and Terminology ..................................... 5 Ligand Characteristics.......................................... 6 Metal Characteristics .................................... ... 8 CHAPTEK 3: STKUCTUKING AND REGISTKATION POLICIES FOR COORDINATION COMPOUNDS .............................................11 Policies for Structuring Coordination Compounds ................. Ligands .................................................... Ligand Structures........................................... Metal-Ligand
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												  Ligand Field Theory Continued Chapter 10Coordination Chemistry II: Ligand Field Theory Continued Chapter 10 Wednesday, November 25, 2015 Adding Metal Electrons * t1u Metal ions typically have some valence electrons that can be accommodated in the metal d orbitals * a1g • d0 ions – Ti4+, Zr4+, V5+, Ta5+, Cr6+, Mo6+, etc. 1 3+ 4+ 4+ 5+ 5+ * • d ions – Ti , V , Ta , Cr , Mo , etc. eg • d2 ions – V3+, Ta3+, Cr4+, Mo4+, etc. • d3 ions – V2+, Ta2+, Cr3+, Mo3+, Mn4+, etc. t2g • d4-d7 – hold on • d8 ions – Co1+, Ni2+, Cu3+, etc. t1u • d9 ions – Ni1+, Cu2+, etc. a1g 10 1+ 2+ eg • d ions – Cu , Zn , etc. High Spin and Low Spin Complexes * * t1u The situation is a little more t1u complicated for d4-d7 metals: * * a1g a1g •d4 ions – Cr2+, Mo2+, Mn3+, Fe4+, Ru4+, etc. * * eg eg •d5 ions – Mn2+, Re2+, Fe3+, Ru3+, etc. LOW SPIN •d6 ions – Fe2+, Ru2+, Co3+, Rh3+, Pt4+, etc. t2g t2g HIGH SPIN •d7 ions – Fe1+, Ru1+, Co2+, Rh2+, Ni3+, etc. t t 1u For d4-d7 electron counts: 1u a1g a1g • when ∆o > Πtotal ➙ low spin eg eg • when ∆o < Πtotal ➙ high spin High Spin and Low Spin n+ Electron configurations for octahedral complexes, e.g. [M(H2O)6] . Only the d4 through d7 cases can be either high-spin or low spin. Δ< Π Δ> Π Weak-field ligands: Strong-field ligands: - Small Δ, High spin complexes - Large Δ, Low spin complexes Electron Pairing Energy The total electron pairing energy, Πtotal, has two components, Πc and Πe • Πc is a destabilizing energy for the Coulombic repulsion associated with putting two electrons into the same orbital • Πe is a stabilizing energy for electron exchange associated with
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												  Organometallics Study Meeting H.Mitsunuma 104/21/2011 Organometallics Study Meeting H.Mitsunuma 1. Crystal field theory (CFT) and ligand field theory (LFT) CFT: interaction between positively charged metal cation and negative charge on the non-bonding electrons of the ligand LFT: molecular orbital theory (back donation...etc) Octahedral (figure 9-1a) d-electrons closer to the ligands will have a higher energy than those further away which results in the d-orbitals splitting in energy. ligand field splitting parameter ( 0): energy between eg orbital and t2g orbital 1) high oxidation state 2) 3d<4d<5d 3) spectrochemical series I-< Br-< S2-< SCN-< Cl-< N -,F-< (H N) CO, OH-< ox, O2-< H O< NCS- <C H N, NH < H NCH CH NH < bpy, phen< NO - - - - 3 2 2 2 5 5 3 2 2 2 2 2 < CH3 ,C6H5 < CN <CO cf) pairing energy: energy cost of placing an electron into an already singly occupied orbital Low spin: If 0 is large, then the lower energy orbitals(t2g) are completely filled before population of the higher orbitals(eg) High spin: If 0 is small enough then it is easier to put electrons into the higher energy orbitals than it is to put two into the same low-energy orbital, because of the repulsion resulting from matching two electrons in the same orbital 3 n ex) (t2g) (eg) (n= 1,2) Tetrahedral (figure 9-1b), Square planar (figure 9-1c) LFT (figure 9-3, 9-4) - - Cl , Br : lower 0 (figure 9-4 a) CO: higher 0 (figure 9-4 b) 2. Ligand metal complex hapticity formal chargeelectron donation metal complex hapticity formal chargeelectron donation MR alkyl 1 -1 2 6-arene 6 0 6 MH hydride 1 -1 2 M MX H 1 -1 2 halogen 1 -1 2 M M -hydride M OR alkoxide 1 -1 2 X 1 -1 4 M M -halogen O R acyl 1 -1 2 O 1 -1 4 M R M M -alkoxide O 1-alkenyl 1 -1 2 C -carbonyl 1 0 2 M M M R2 C -alkylidene 1 -2 4 1-allyl 1 -1 2 M M M O C 3-carbonyl 1 0 2 M R acetylide 1 -1 2 MMM R R C 3-alkylidine 1 -3 6 M carbene 1 0 2 MMM R R M carbene 1 -2 4 R M carbyne 1 -3 6 M CO carbonyl 1 0 2 M 2-alkene 2 0 2 M 2-alkyne 2 0 2 M 3-allyl 3 -1 4 M 4-diene 4 0 4 5 -cyclo 5 -1 6 M pentadienyl 1 3.
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												  ComplexationFACULTY OF PHARMACEUTICAL SCIENCES, RAMAUNIVERSITY, KANPUR B.PHARM 3rd SEM PHYSICAL PHARMACEUTICS-I BP302T MR. PEEYUSH Assistant professor Rama university, kanpur Complexation Overview Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes Methods of Analysis Method of Continuous Variation PH Titration Distribution Method Solubility Method Spectroscopy Learning Objectives 1. Define the three classes of complexes with pharmaceutically relevant examples. 2. Describe chelates, their physically properties, and what differentiates them from organic molecular complexes. 3. Describe the types of forces that hold together organic molecular complexes with examples. 4. Describe the forces in polymer–drug complexes used for drug delivery. 5. Discuss the pharmaceutical applications of cyclodextrins. 6. Describe the methods of analysis of complexes and determine their stoichiometric ratios and stability constants. Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes INTRODUCTION Complexes are compounds that result from donor–acceptor mechanisms between two or more chemical species. Complexes can be divided broadly into three classes depending the type of the acceptor substance: 1. Metal ion complexes 2. Organic molecular complexes 3. Inclusion complexes Intermolecular forces involved in the formation of complexes: 1. Van der Waals forces. 2. Hydrogen bonds (important in molecular complexes). 3. Coordinate covalence (important in metal complexes). 4. Charge transfer. 5. Hydrophobic interaction. Introduction Types of Complexes Metal Ion Complexes A. Inorganic type B. Chelates C. Olefin type D. Aromatic type II. Organic Molecular Complexes A. Quinhydrone type B. Picric acid type C. Caffeine and other drug complexes D. Polymer type III. Inclusion Compounds A. Channel lattice type B. Layer type C. Clathrates D. Monomolecular type E.
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												  Physical Organic ChemistryPHYSICAL ORGANIC CHEMISTRY Yu-Tai Tao (陶雨台) Tel: (02)27898580 E-mail: [email protected] Website:http://www.sinica.edu.tw/~ytt Textbook: “Perspective on Structure and Mechanism in Organic Chemistry” by F. A. Corroll, 1998, Brooks/Cole Publishing Company References: 1. “Modern Physical Organic Chemistry” by E. V. Anslyn and D. A. Dougherty, 2005, University Science Books. Grading: One midterm (45%) one final exam (45%) and 4 quizzes (10%) homeworks Chap.1 Review of Concepts in Organic Chemistry § Quantum number and atomic orbitals Atomic orbital wavefunctions are associated with four quantum numbers: principle q. n. (n=1,2,3), azimuthal q.n. (m= 0,1,2,3 or s,p,d,f,..magnetic q. n. (for p, -1, 0, 1; for d, -2, -1, 0, 1, 2. electron spin q. n. =1/2, -1/2. § Molecular dimensions Atomic radius ionic radius, ri:size of electron cloud around an ion. covalent radius, rc:half of the distance between two atoms of same element bond to each other. van der Waal radius, rvdw:the effective size of atomic cloud around a covalently bonded atoms. - Cl Cl2 CH3Cl Bond length measures the distance between nucleus (or the local centers of electron density). Bond angle measures the angle between lines connecting different nucleus. Molecular volume and surface area can be the sum of atomic volume (or group volume) and surface area. Principle of additivity (group increment) Physical basis of additivity law: the forces between atoms in the same molecule or different molecules are very “short range”. Theoretical determination of molecular size:depending on the boundary condition.