Uridine Diphosphate Glucose Breakdown Is Mediated by a Unique
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TRYPTOPHANYL TRANSF'er RNA SYNTHETASE and EXPRESSION of the TRYPTOPHAN OPERON in the Trp8 MUTANTS of ESCHERICHIA COLI I N Additi
TRYPTOPHANYL TRANSF'ER RNA SYNTHETASE AND EXPRESSION OF THE TRYPTOPHAN OPERON IN THE trp8 MUTANTS OF ESCHERICHIA COLI KOREAKI ITO, SOTA HIRAGA AND TAKASHI WRA Institute for Virus Research, Kyoto Uniuersity, Kyoto, Japan Received November 15, 1968 INaddition to their role in protein synthesis, aminoacyl tRNA synthetases in bacteria have been shown to have a regulatory role in the formation of enzymes involved in the synthesis of corresponding amino acids. This has been demon- strated at least in the case of isoleucine and valine (EIDLICand NEIDHARDT1965; YANIV,JACOB and GROS1965) and histidine (SCHLESINGERand MAGASANIK1964; ROTH, ANTONand HARTMAN1966; ROTH and AMES1966). Transfer RNA (tRNA) also appears to be involved in the regulation of these systems (FREUND- LICH 1967; SILBERT,FINK and AMES1966). The expression of the genes determining the tryptophan biosynthetic enzymes, the tryptophan operon in Escherichia coli, is subject to repression by excess L-tryptophan, the end product of the pathway. The mutants of a regulatory gene, trpR, located outside of this operon, exhibit constitutive synthesis of the biosyn- thetic enzymes (COHENand JACOB1959). In addition, we have previously reported tryptophan auxotrophic mutants in which the known structural genes of the tryptophan operon remain intact. One of these mutants, designated trpiS5, has been mapped near strA on the chromosome (HIRAGA,ITO, HAMADA and YURA 1967a). In the present paper, we report on further characterization of the trpS5 mutant and discuss the possible role of the trpS gene in the regulation of the tryptophan operon. The results suggest that trpS, located between strA and maZA, is the structural gene for tryptophanyl tRNA synthetase, and that tryptophanyl tRNA synthetase is somehow involved in the repression of the tryptophan operon. -
We Have Previously Reported' the Isolation of Guanosine Diphosphate
VOL. 48, 1962 BIOCHEMISTRY: HEATH AND ELBEIN 1209 9 Ramel, A., E. Stellwagen, and H. K. Schachman, Federation Proc., 20, 387 (1961). 10 Markus, G., A. L. Grossberg, and D. Pressman, Arch. Biochem. Biophys., 96, 63 (1962). "1 For preparation of anti-Xp antisera, see Nisonoff, A., and D. Pressman, J. Immunol., 80, 417 (1958) and idem., 83, 138 (1959). 12 For preparation of anti-Ap antisera, see Grossberg, A. L., and D. Pressman, J. Am. Chem. Soc., 82, 5478 (1960). 13 For preparation of anti-Rp antisera, see Pressman, D. and L. A. Sternberger, J. Immunol., 66, 609 (1951), and Grossberg, A. L., G. Radzimski, and D. Pressman, Biochemistry, 1, 391 (1962). 14 Smithies, O., Biochem. J., 71, 585 (1959). 15 Poulik, M. D., Biochim. et Biophysica Acta., 44, 390 (1960). 16 Edelman, G. M., and M. D. Poulik, J. Exp. Med., 113, 861 (1961). 17 Breinl, F., and F. Haurowitz, Z. Physiol. Chem., 192, 45 (1930). 18 Pauling, L., J. Am. Chem. Soc., 62, 2643 (1940). 19 Pressman, D., and 0. Roholt, these PROCEEDINGS, 47, 1606 (1961). THE ENZYMATIC SYNTHESIS OF GUANOSINE DIPHOSPHATE COLITOSE BY A MUTANT STRAIN OF ESCHERICHIA COLI* BY EDWARD C. HEATHt AND ALAN D. ELBEINT RACKHAM ARTHRITIS RESEARCH UNIT AND DEPARTMENT OF BACTERIOLOGY, THE UNIVERSITY OF MICHIGAN Communicated by J. L. Oncley, May 10, 1962 We have previously reported' the isolation of guanosine diphosphate colitose (GDP-colitose* GDP-3,6-dideoxy-L-galactose) from Escherichia coli 0111-B4; only 2.5 umoles of this sugar nucleotide were isolated from 1 kilogram of cells. Studies on the biosynthesis of colitose with extracts of this organism indicated that GDP-mannose was a precursor;2 however, the enzymatically formed colitose was isolated from a high-molecular weight substance and attempts to isolate the sus- pected intermediate, GDP-colitose, were unsuccessful. -
S42003-019-0587-Z.Pdf
Corrected: Author Correction ARTICLE https://doi.org/10.1038/s42003-019-0587-z OPEN High-resolution crystal structure of human asparagine synthetase enables analysis of inhibitor binding and selectivity Wen Zhu 1,10, Ashish Radadiya 1, Claudine Bisson2,10, Sabine Wenzel 3, Brian E. Nordin4,11, 1234567890():,; Francisco Martínez-Márquez3, Tsuyoshi Imasaki 3,5, Svetlana E. Sedelnikova2, Adriana Coricello 1,6,7, Patrick Baumann 1, Alexandria H. Berry8, Tyzoon K. Nomanbhoy4, John W. Kozarich 4, Yi Jin 1, David W. Rice 2, Yuichiro Takagi 3 & Nigel G.J. Richards 1,9 Expression of human asparagine synthetase (ASNS) promotes metastatic progression and tumor cell invasiveness in colorectal and breast cancer, presumably by altering cellular levels of L-asparagine. Human ASNS is therefore emerging as a bona fide drug target for cancer therapy. Here we show that a slow-onset, tight binding inhibitor, which exhibits nanomolar affinity for human ASNS in vitro, exhibits excellent selectivity at 10 μM concentration in HCT- 116 cell lysates with almost no off-target binding. The high-resolution (1.85 Å) crystal structure of human ASNS has enabled us to identify a cluster of negatively charged side chains in the synthetase domain that plays a key role in inhibitor binding. Comparing this structure with those of evolutionarily related AMP-forming enzymes provides insights into intermolecular interactions that give rise to the observed binding selectivity. Our findings demonstrate the feasibility of developing second generation human ASNS inhibitors as lead compounds for the discovery of drugs against metastasis. 1 School of Chemistry, Cardiff University, Cardiff, UK. 2 Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK. -
A Previously Undescribed Pathway for Pyrimidine Catabolism
A previously undescribed pathway for pyrimidine catabolism Kevin D. Loh*†, Prasad Gyaneshwar*‡, Eirene Markenscoff Papadimitriou*§, Rebecca Fong*, Kwang-Seo Kim*, Rebecca Parales¶, Zhongrui Zhouʈ, William Inwood*, and Sydney Kustu*,** *Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720-3102; ¶Section of Microbiology, 1 Shields Avenue, University of California, Davis, CA 95616; and ʈCollege of Chemistry, 8 Lewis Hall, University of California, Berkeley, CA 94720-1460 Contributed by Sydney Kustu, January 19, 2006 The b1012 operon of Escherichia coli K-12, which is composed of tive N sources. Here we present evidence that the b1012 operon seven unidentified ORFs, is one of the most highly expressed codes for proteins that constitute a previously undescribed operons under control of nitrogen regulatory protein C. Examina- pathway for pyrimidine degradation and thereby confirm the tion of strains with lesions in this operon on Biolog Phenotype view of Simaga and Kos (8, 9) that E. coli K-12 does not use either MicroArray (PM3) plates and subsequent growth tests indicated of the known pathways. that they failed to use uridine or uracil as the sole nitrogen source and that the parental strain could use them at room temperature Results but not at 37°C. A strain carrying an ntrB(Con) mutation, which Behavior on Biolog Phenotype MicroArray Plates. We tested our elevates transcription of genes under nitrogen regulatory protein parental strain NCM3722 and strains with mini Tn5 insertions in C control, could also grow on thymidine as the sole nitrogen several genes of the b1012 operon on Biolog (Hayward, CA) source, whereas strains with lesions in the b1012 operon could not. -
Novel Derivatives of Nicotinamide Adenine Dinucleotide (NAD) and Their Biological Evaluation Against NAD- Consuming Enzymes
Novel derivatives of nicotinamide adenine dinucleotide (NAD) and their biological evaluation against NAD- Consuming Enzymes Giulia Pergolizzi University of East Anglia School of Pharmacy Thesis submitted for the degree of Doctor of Philosophy July, 2012 © This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. ABSTRACT Nicotinamide adenine dinucleotide (β-NAD+) is a primary metabolite involved in fundamental biological processes. Its molecular structure with characteristic functional groups, such as the quaternary nitrogen of the nicotinamide ring, and the two high- energy pyrophosphate and nicotinamide N-glycosidic bonds, allows it to undergo different reactions depending on the reactive moiety. Well known as a redox substrate owing to the redox properties of the nicotinamide ring, β-NAD+ is also fundamental as a substrate of NAD+-consuming enzymes that cleave either high-energy bonds to catalyse their reactions. In this study, a panel of novel adenine-modified NAD+ derivatives was synthesized and biologically evaluated against different NAD+-consuming enzymes. The synthesis of NAD+ derivatives, modified in position 2, 6 or 8 of the adenine ring with aryl/heteroaryl groups, was accomplished by Suzuki-Miyaura cross-couplings. Their biological activity as inhibitors and/or non-natural substrates was assessed against a selected range of NAD+-consuming enzymes. The fluorescence of 8-aryl/heteroaryl NAD+ derivatives allowed their use as biochemical probes for the development of continuous biochemical assays to monitor NAD+-consuming enzyme activities. -
Effect of Uridine on Response of 5-Azacytidine-Resistant Human Leukemic Cells to Inhibitors of De Novo Pyrimidine Synthesis1
[CANCER RESEARCH 44, 5505-5510, December 1984] Effect of Uridine on Response of 5-Azacytidine-resistant Human Leukemic Cells to Inhibitors of de Novo Pyrimidine Synthesis1 S. Grant,2 K. Bhalla,3 and M. Gleyzer Department of Medicine, Columbia University College of Physicians and Surgeons, New York, New York 10032 ABSTRACT activity is the most commonly encountered mode of resistance in animal systems (28). A uridine-cytidine kinase-deficient human promyelocytic leu- We have recently isolated a uridine-cytidine kinase-deficient, kemic subline (HL-60-5-aza-Cyd) has been isolated which is highly 5-aza-Cyd-resistant human promyelocytic leukemic sub- highly resistant to the antileukemic agent 5-azacytidine. Resist line (HL-60-5-aza-Cyd) (8) which is capable of surviving 5-aza- ant cells exposed to 10~5 M 5-azacytidine for 2 hr exhibit a Cyd concentrations (10~4 M) that exceed peak plasma levels in marked reduction in both the total ¡ntracellularaccumulation of humans (27). The purpose of the present studies was to assess 5-azacytidine (11.9 versus 156.0 pmol/106 cells) as well as its the metabolism of 5-aza-Cyd in these resistant cells and to incorporation into RNA (3.1 versus 43.4 pmol//ig o-ribose) com examine their response to a variety of clinically available inhibitors pared to the parent line. These biochemical changes are asso of de novo pyrimidine synthesis. Of the latter agents, PALA, an ciated with nearly a 100-fold decrease in sensitivity to the growth inhibitor of aspártele transcarbamylase (26), and pyrazofurin, an inhibitory effects of 5-azacytidine (concentration of drug associ ated with a 50% reduction in cell growth, 3.5 x 10~5 versus 5.0 inhibitor of orotidylate decarboxylase (5), are of particular inter x 10"7 M). -
Non-Utilization of Radioactive Lodinated Uracil, Uridine, and Orotic Acid by Animal Tissues in Vivo W
Non-utilization of Radioactive lodinated Uracil, Uridine, and Orotic Acid by Animal Tissues in Vivo W. H. PRUSOFF,WL. HOLMES,tANDA. D. WELCH Department of Pharmacology, School of Medicine, Western Reserve University, Cleveland, Ohio) Adenine (1, 6), guanine (1, 3, 5), cytidine (13), lometric localization of brain tumors. Further desoxycytidine (18), thymidine (18), and orotic more, an I'3-labeled oxazine dye had a significant acid (2), can be utilized by certain mammalian or effect in prolonging the life of mice bearing trans ganisms for the synthesis of nucleic acids ; and the planted tumors (19). If an effective and easily syn rate of incorporation of many of these compounds thesized radioactive iodine-labeled compound into the nucleic acids of rapidly growing tissues, could be found, the possibility might be afforded of such as regenerating liver or neoplastic tissues, is the comparable use of compounds labeled with greater than into those of resting tissues (10, 21). eka-iodine (astatine2@), a potent emitter of alpha Although 8-azaguanine is not a naturally occur particles, although this element is prepared with ring compound, evidence that it can be incorpo difficulty and has the inconveniently short half rated to a small extent into mammalian nucleic life of 7.5 hours (12). acids has been presented (16). This analog of gua Three P3-labeled pyrimidines, iodouridine-5- nine markedly inhibited the growth of Tetrahy I'S', iodouracil-5-I'31, and iodoorotic acid-5-P31, mena geleii, a guanine-requiring protozoan, and of were synthesized, and their incorporation into nor certain experimental tumors. Kidder et al. -
On the Action of Fluorouracil on Leukemia Cells1
[CANCER RESEARCH 26 Part 1, 1611-1615,August 1966] On the Action of Fluorouracil on Leukemia Cells1 ALLAN R. GOLDBERG, JOHN H. MACHLEDT, JR., AND ARTHUR B. PARDEE Department of Biology, Princeton University, Princeton, New Jersey Summary In the present study the lymphoid leukemia L1210 of the mouse and a FU-resistant line were investigated. The problem The uptake and metabolism of radioactive uracil, uridine, posed was to discover a site of FU inhibition in the sensitive phosphate, and 5-fluorouracil by the mouse L1210 leukemic cells. The results suggest that the "salvage" pathway of pyrimi leukocytes and a fluorouracil-resistant variant were investigated. dine synthesis (see Chart 1) is sensitive to FU, with a resulting The dual aims of the research were to locate a metabolic differ inhibition of nucleic acid synthesis in the sensitive cells. The re ence responsible for resistance, and to define the site of action of the inhibitor. The resistant cells possess a much less active "sal sistant cells do not depend on this pathway, and hence are not vage" pathway, from uracil to nucleic acids, owing to a weaker susceptible to the inhibitor. uridine phosphorylase activity. They depend on the de novo pathway for a supply of pyrimidine nucleotides. Also, the con Materials and Methods version of fluorouracil to phosphorylated derivatives and its Uracil-3H and uridine-3H were obtained from the New Eng incorporation into RNA is somewhat reduced. Fluorouracil is land Nuclear Corporation, 5-FU-3H from Schwarz BioResearch, postulated to be less effective against these cells because its main Inc., and Na2H32PO4from Volk Radiochemical Co. -
Non-Enzymatic Synthesis of the Coenzymes, Uridine Diphosphate
N O N - E N Z Y M A T I C S Y N T H E S I S OF THE C O E N Z Y M E S , U R I D I N E D I P H O S P H A T E G L U C O S E A N D C Y T I D I N E D I P H O S P H A T E C H O L I N E , A N D O T H E R P H O S P H O R Y L A T E D M E T A B O L I C I N T E R M E D I A T E S A. M A R , J. D W O R K I N , and J. ORO* Department of Biochemical and Biophysical Sciences, University of Houston, Houston, TX 77004, U.S.A. (Received 3 November, 1986) Abstract. The synthesis of uridine diphosphate glucose (UDPG), cytidine diphosphate choline (CDP- choline), glucose-l-phosphate (G1P) and glucose-6-phosphate (G6P) has been accomplished under simulated prebiotic conditions using urea and cyanamide, two condensing agents considered to have been present on the primitive Earth. The synthesis of UDPG was carried out by reacting G1P and UTP at 70 °C for 24 hours in the presence of the condensing agents in an aqueous medium. CDP-choline was obtained under the same conditions by reacting choline phosphate and CTP. G1P and G6P were synthesized from glucose and inorganic phosphate at 70°C for 16 hours. -
Development, Uridine Diphosphate Glucose (UDPG), Pyrophosphorylase (EC 2.7.7.9)11 and Trehalose-6-Phosphate Synthetase (EC 2.3.1.15)
PERIODS OF GENETIC TRANSCRIPTION REQUIRED FOR THE SYNTHESIS OF THREE ENZYMES DURING CELLULAR SLIME MOLD DEVELOPMENT* BY R. ROTH, t J. 1\I. ASHWORTH,4 AND M. SUSSMAN§ DEPARTMENT OF BIOLOGY, BRANDEIS UNIVERSITY, WALTHAM, MASSACHUSETTS Communicated by Sol Spiegelman, January 24, 1968 Various aspects of mRNA synthesis and stability have been examined in bacteria by permitting transcription to occur over a known, usually brief, period and then determining how much of a specific protein subsequently accumulates in the absence of further RNA synthesis. Thus, bacterial cells have been exposed to an inducer for very brief periods during which RNA synthesis could proceed normally and were then permitted to synthesize the enzyme de novo in the absence of both the inducer and further transcription. The latter restriction was ac- complished with base analogues,' uracil deprivation,2 actinomycin D,3 and by infection with lytic viruses.5 In an arginine- and uracil-requiring strain of E. coli infected with phage T6, protein and RNA synthesis were sequentially (and reversibly) restricted by successive precursor deprivations in order to study the accumulation of enzymes required for phage development.2 6 Under all of the above conditions, the amounts of enzymes synthesized were assumed to reflect in a simple fashion the over-all quantities and net concentrations of the correspond- irng mRNA species, and the subsequent decays of enzyme-forming capacity with time were assumed to reflect the manner in which the mRNA disappeared. This approach has also been exploited to investigate the transcriptive and translative events required for accumulation and disappearance of the enzyme uridine diphosphate galactose: polysaccharide transferase during slime mold development. -
Increased Blood–Brain Barrier Permeability Is Not a Primary Determinant for Lethality of West Nile Virus Infection in Rodents
Journal of General Virology (2008), 89, 467–473 DOI 10.1099/vir.0.83345-0 Increased blood–brain barrier permeability is not a primary determinant for lethality of West Nile virus infection in rodents John D. Morrey,1 Aaron L. Olsen,1 Venkatraman Siddharthan,1 Neil E. Motter,1 Hong Wang,1 Brandon S. Taro,1 Dong Chen,2 Duane Ruffner2 and Jeffery O. Hall1 Correspondence 1Institute for Antiviral Research, Department of Animal, Dairy, and Veterinary Sciences, John D. Morrey Utah State University, Logan, UT 84322-4700, USA [email protected] 2Center for Integrated Biosystems, Utah State University, Logan, UT 84322-4700, USA Blood–brain barrier (BBB) permeability was evaluated in mice and hamsters infected with West Nile virus (WNV, flavivirus) as compared to those infected with Semliki Forest (alphavirus) and Banzi (flavivirus) viruses. BBB permeability was determined by measurement of fluorescence in brain homogenates or cerebrospinal fluid (CSF) after intraperitoneal (i.p.) injection of sodium fluorescein, by macroscopic examination of brains after i.p. injection of Evans blue, or by measurement of total protein in CSF compared to serum. Lethal infection of BALB/c mice with Semliki Forest virus and Banzi virus caused the brain : serum fluorescence ratios to increase from a baseline of 2–4 % to as high as 11 and 15 %, respectively. Lethal infection of BALB/c mice with WNV did not increase BBB permeability. When C57BL/6 mice were used, BBB permeability was increased in some, but not all, of the WNV-infected animals. A procedure was developed to measure BBB permeability in live WNV-infected hamsters by comparing the fluorescence in the CSF, aspirated from the cisterna magnum, with the fluorescence in the serum. -
The De Novo Biosynthesis of Uridine Monophosphate (UMP) Involves Six Enzymatic Reactions and Appears to Be Encoded by Only Three Structural Genes in Animals
J. Nutr. Sci. Vitaminol., 37, 517-528, 1991 Effect of Dietary Protein on Pyrimidine-Metabolizing Enzymes in Rats Masae KANEKO, Shigeko FUJIMOTO, Mariko KIKUGAWA, Yasuhide KONTANI, and Nanaya TAMAKI* Laboratory of Nutritional Chemistry, Faculty of Nutrition, Kobe-Gakuin University, Nishi-ku, Kobe 651-21, Japan (Received February 25, 1991) Summary The effect of dietary protein on pyrimidine-metabolizing enzymes was studied in the rat. The activities of dihydropyrimidine dehydrogenase and ƒÀ-ureidopropionase in the livers of rats fed a protein free diet were significantly decreased, while the activity of dihydropyrim idinase was unaffected. Protein deficiency (5%) also decreased the activity of ƒÀ-ureidopropionase. On the other hand, a high-protein diet (60%) increased the level of ƒÀ-ureidopropionase. The activities of ƒÀ- alanine-oxoglutarate aminotransferase (aminobutyrate aminotransferase) and D-3-aminoisobutyrate-pyruvate aminotransferase ((R)-3-amino-2- methylpropionate-pyruvate aminotransferase), which are present in mi tochondria, depended on the amount of protein in the diet. Ammonium ions supplemented in the diet and given by injection did not affect the activities of rat liver pyrimidine-metabolizing enzymes (dihydropyrimi dine dehydrogenase, dihydropyrimidinase, ƒÀ-ureidopropionase, ƒÀ-alanine - oxoglutarate aminotransferase and D-3-aminoisobutyrate-pyruvate ami notransferase). Dietary uridine resulted in the accumulation of uracil in the liver, but did not affect the activities of pyrimidine-metabolizing enzymes. Key Words dihydropyrimidine dehydrogenase, dihydropyrimidinase, ƒÀ- ureidopropionase, ƒÀ-alanine-oxoglutarate aminotransferase, D-3-amino isobutyrate-pyruvate aminotransferase, pyrimidine The de novo biosynthesis of uridine monophosphate (UMP) involves six enzymatic reactions and appears to be encoded by only three structural genes in animals. The active sites of the first three enzymes, carbamoyl-phosphate synthase, aspartate transcarbamylase, and dihydroorotase, are on a single large polypeptide * To whom correspondence should be addressed .