Densovirus Associated with Sea-Star Wasting Disease and Mass Mortality
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Astropecten Aranciacus (Asteroidea, Echinodermata) in Abh Ingigkeit Von Umweltbedingungen
Helgol~inder wiss. Meeresunters. 28, 167-182 (1976) Vorkommen yon Astropecten aranciacus (Asteroidea, Echinodermata) in Abh ingigkeit von Umweltbedingungen H. BURLA, B. PABST & W. STAHEL Zoologiscbes Museum der Universitlit Zi~ricb; Ziirich, Scbweiz ABSTRACT: Environmental conditions affecting the occurrence of Astropecten aranciacus (Asteroidea, Echinodermata). In shallow water off the north coast of Sardinia (western Mediterranean) the frequency of occurrence of the starfish Astropecten aranciacus was recorded in 70 sample areas of 25 ms each. Four environmental factors, namely depth, average sand grain diameter, number of mollusc species, and number of individuals of the genus Echino- cardium proved to be related to the abundance of A. aranciacus. The sediment contained many species, each, as a rule, being present at low abundance. The molluscs found and their sizes are listed. EINLEITUNG Astropecten aranciacus ist im Mittelmeer die gr&3te Art seiner Gattung, tritt an manchen K~istenstellen reichlicla auf und diirflce in seinem Habitat, dem sandigen Infra- litoral, als unspezialisierter R~uber einen kontrollierenden Einflui3 auf die Best~inde seiner Beutetiere ausi~ben. Doch wissen wir nicht, yon welchen EigenschafLen des Habi- tats A. aranciacus im Vorkommen und damit in der Wirkung auf andere Glieder der Lebensgemeinschafi beeinflut~t wird. PICARD (1965) #,ihtt A. aranciacus zur SGCF-Biocoenose (,,sables grossiers et fins graviers sous l'influence des courants de fond"). MASS~ (1966) bezeichnet A. aranciacus als wenig anspruchsvoll: ,,L'esp&e vit aussi bien sur des graviers real class& que sur des sables fins vaseux"; er finder sie ,,surtout dans tes fonds meubles qui bordent les herbiers des Posidonies", ober- wie unterhalb solcher Rasen. -
Marine Invertebrate Field Guide
Marine Invertebrate Field Guide Contents ANEMONES ....................................................................................................................................................................................... 2 AGGREGATING ANEMONE (ANTHOPLEURA ELEGANTISSIMA) ............................................................................................................................... 2 BROODING ANEMONE (EPIACTIS PROLIFERA) ................................................................................................................................................... 2 CHRISTMAS ANEMONE (URTICINA CRASSICORNIS) ............................................................................................................................................ 3 PLUMOSE ANEMONE (METRIDIUM SENILE) ..................................................................................................................................................... 3 BARNACLES ....................................................................................................................................................................................... 4 ACORN BARNACLE (BALANUS GLANDULA) ....................................................................................................................................................... 4 HAYSTACK BARNACLE (SEMIBALANUS CARIOSUS) .............................................................................................................................................. 4 CHITONS ........................................................................................................................................................................................... -
The Ciliate Orchitophrya Stellarum Viewed As a Facultative Parasite of Asteriid Sea Stars
Cah. Biol. Mar. (2007) 48 : 9-16 The ciliate Orchitophrya stellarum viewed as a facultative parasite of asteriid sea stars William B. STICKLE1, Eugene N. KOZLOFF2* and Margaret C. HENK1 (1) Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, 70803-1715, USA (2) Friday Harbor Laboratories, University of Washington, Friday Harbor, WA, 98250, USA *Corresponding author: Fax: (1) 206 543 1273. E-mail: [email protected] Abstract: Orchitophrya stellarum Cépède, 1907 is a ciliate that consumes sperm in the testes of male asteriid sea stars in the Pacific and North Atlantic oceans. Previous studies have reported its presence in smears and sections of testes, and we have also observed it in the spawn. This organism is easily cultured in seawater containing bacteria nourished by yeast extract or tissues from various marine invertebrates and the domestic chicken. During adaptation to culture conditions, the ciliates become smaller, the number of kineties is reduced, and the buccal cavity is shifted farther away from the anterior end. These changes are reversed if the ciliates are fed sperm of asteriid sea stars. Orchitophrya stellarum is therefore consi- dered to be a facultative parasite that can live indefinitely in situations where it can feed on bacteria and tissue detritus. It probably enters the testes of reproductively mature male sea stars by way of the gonopores. Resumé : Le cilié Orcitophyra stellarum vu comme un parasite possible des étoiles de mer astériide. Le cilié Orchitophrya stellarum Cépède, 1907, parfois trouvé dans les étoiles de mer asterides mâles dans les océans Pacifique et Atlantique Nord, se nourrit de spermatozoïdes. -
Olympia Oyster (Ostrea Lurida)
COSEWIC Assessment and Status Report on the Olympia Oyster Ostrea lurida in Canada SPECIAL CONCERN 2011 COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC. 2011. COSEWIC assessment and status report on the Olympia Oyster Ostrea lurida in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. xi + 56 pp. (www.sararegistry.gc.ca/status/status_e.cfm). Previous report(s): COSEWIC. 2000. COSEWIC assessment and status report on the Olympia Oyster Ostrea conchaphila in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vii + 30 pp. (www.sararegistry.gc.ca/status/status_e.cfm) Gillespie, G.E. 2000. COSEWIC status report on the Olympia Oyster Ostrea conchaphila in Canada in COSEWIC assessment and update status report on the Olympia Oyster Ostrea conchaphila in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. 1-30 pp. Production note: COSEWIC acknowledges Graham E. Gillespie for writing the provisional status report on the Olympia Oyster, Ostrea lurida, prepared under contract with Environment Canada and Fisheries and Oceans Canada. The contractor’s involvement with the writing of the status report ended with the acceptance of the provisional report. Any modifications to the status report during the subsequent preparation of the 6-month interim and 2-month interim status reports were overseen by Robert Forsyth and Dr. Gerald Mackie, COSEWIC Molluscs Specialist Subcommittee Co-Chair. For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment Canada Ottawa, ON K1A 0H3 Tel.: 819-953-3215 Fax: 819-994-3684 E-mail: COSEWIC/[email protected] http://www.cosewic.gc.ca Également disponible en français sous le titre Ếvaluation et Rapport de situation du COSEPAC sur l’huître plate du Pacifique (Ostrea lurida) au Canada. -
Wasting Disease and Static Environmental Variables Drive Sea
Journal of Experimental Marine Biology and Ecology 520 (2019) 151209 Contents lists available at ScienceDirect Journal of Experimental Marine Biology and Ecology journal homepage: www.elsevier.com/locate/jembe Wasting disease and static environmental variables drive sea star T assemblages in the Northern Gulf of Alaska ⁎ Brenda Konara, , Timothy James Mitchella, Katrin Ikena, Heather Colettib, Thomas Deanc, Daniel Eslerd, Mandy Lindeberge, Benjamin Pisterf, Benjamin Weitzmana,d a University of Alaska Fairbanks, PO Box 757220, Fairbanks, AK 99709, USA b US National Park Service, Inventory and Monitoring Program, Southwest Alaska Network, 4175 Geist Road, Fairbanks, AK 99709, USA c Coastal Resource Associates, 5190 El Arbol Dr., Carlsbad, CA 92008, USA d US Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK 99508, USA e NOAA Fisheries, AFSC, Auke Bay Laboratories, 17109 Pt Lena Loop Rd, Juneau, AK 99801, USA f US National Park Service, Kenai Fjords National Park, 411 Washington Street, Seward, AK 99664, USA ABSTRACT Sea stars are ecologically important in rocky intertidal habitats where they can play an apex predator role, completely restructuring communities. The recent sea star die-off throughout the eastern Pacific, known as Sea Star Wasting Disease, has prompted a need to understand spatial and temporal patterns of seastarassemblages and the environmental variables that structure these assemblages. We examined spatial and temporal patterns in sea star assemblages (composition and density) across regions in the northern Gulf of Alaska and assessed the role of seven static environmental variables (distance to freshwater inputs, tidewater glacial presence, exposure to wave action, fetch, beach slope, substrate composition, and tidal range) in influencing sea star assemblage structure before and after sea star declines. -
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris Spelaea)
viruses Article Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea) Ian H Mendenhall 1,* , Dolyce Low Hong Wen 1,2, Jayanthi Jayakumar 1, Vithiagaran Gunalan 3, Linfa Wang 1 , Sebastian Mauer-Stroh 3,4 , Yvonne C.F. Su 1 and Gavin J.D. Smith 1,5,6 1 Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore; [email protected] (D.L.H.W.); [email protected] (J.J.); [email protected] (L.W.); [email protected] (Y.C.F.S.) [email protected] (G.J.D.S.) 2 NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore 119077, Singapore 3 Bioinformatics Institute, Agency for Science, Technology and Research, Singapore 138671, Singapore; [email protected] (V.G.); [email protected] (S.M.-S.) 4 Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore 5 SingHealth Duke-NUS Global Health Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore 168753, Singapore 6 Duke Global Health Institute, Duke University, Durham, NC 27710, USA * Correspondence: [email protected] Received: 30 January 2019; Accepted: 7 March 2019; Published: 12 March 2019 Abstract: Bats are unique mammals, exhibit distinctive life history traits and have unique immunological approaches to suppression of viral diseases upon infection. High-throughput next-generation sequencing has been used in characterizing the virome of different bat species. The cave nectar bat, Eonycteris spelaea, has a broad geographical range across Southeast Asia, India and southern China, however, little is known about their involvement in virus transmission. -
WO 2015/061752 Al 30 April 2015 (30.04.2015) P O P CT
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2015/061752 Al 30 April 2015 (30.04.2015) P O P CT (51) International Patent Classification: Idit; 816 Fremont Street, Apt. D, Menlo Park, CA 94025 A61K 39/395 (2006.01) A61P 35/00 (2006.01) (US). A61K 31/519 (2006.01) (74) Agent: HOSTETLER, Michael, J.; Wilson Sonsini (21) International Application Number: Goodrich & Rosati, 650 Page Mill Road, Palo Alto, CA PCT/US20 14/062278 94304 (US). (22) International Filing Date: (81) Designated States (unless otherwise indicated, for every 24 October 2014 (24.10.2014) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (25) Filing Language: English BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (26) Publication Language: English DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, (30) Priority Data: KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, 61/895,988 25 October 2013 (25. 10.2013) US MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, 61/899,764 4 November 2013 (04. 11.2013) US PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, 61/91 1,953 4 December 2013 (04. 12.2013) us SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, 61/937,392 7 February 2014 (07.02.2014) us TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. -
Icosahedral Viruses Defined by Their Positively Charged Domains: a Signature for Viral Identity and Capsid Assembly Strategy
Support Information for: Icosahedral viruses defined by their positively charged domains: a signature for viral identity and capsid assembly strategy Rodrigo D. Requião1, Rodolfo L. Carneiro 1, Mariana Hoyer Moreira1, Marcelo Ribeiro- Alves2, Silvana Rossetto3, Fernando L. Palhano*1 and Tatiana Domitrovic*4 1 Programa de Biologia Estrutural, Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-902, Brazil. 2 Laboratório de Pesquisa Clínica em DST/Aids, Instituto Nacional de Infectologia Evandro Chagas, FIOCRUZ, Rio de Janeiro, RJ, 21040-900, Brazil 3 Programa de Pós-Graduação em Informática, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-902, Brazil. 4 Departamento de Virologia, Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-902, Brazil. *Corresponding author: [email protected] or [email protected] MATERIALS AND METHODS Software and Source Identifier Algorithms Calculation of net charge (1) Calculation of R/K ratio This paper https://github.com/mhoyerm/Total_ratio Identify proteins of This paper https://github.com/mhoyerm/Modulate_RK determined net charge and R/K ratio Identify proteins of This paper https://github.com/mhoyerm/Modulate_KR determined net charge and K/R ratio Data sources For all viral proteins, we used UniRef with the advanced search options (uniprot:(proteome:(taxonomy:"Viruses [10239]") reviewed:yes) AND identity:1.0). For viral capsid proteins, we used the advanced search options (proteome:(taxonomy:"Viruses [10239]") goa:("viral capsid [19028]") AND reviewed:yes) followed by a manual selection of major capsid proteins. Advanced search options for H. -
The Echinoderm Fauna of Turkey with New Records from the Levantine Coast of Turkey
Proc. of middle East & North Africa Conf. For Future of Animal Wealth THE ECHINODERM FAUNA OF TURKEY WITH NEW RECORDS FROM THE LEVANTINE COAST OF TURKEY Elif Özgür1, Bayram Öztürk2 and F. Saadet Karakulak2 1Faculty of Fisheries, Akdeniz University, TR-07058 Antalya, Turkey 2İstanbul University, Faculty of Fisheries, Ordu Cad.No.200, 34470 Laleli- Istanbul, Turkey Corresponding author e-mail: [email protected] ABSTRACT The echinoderm fauna of Turkey consists of 80 species (two Crinoidea, 22 Asteroidea, 18 Ophiuroidea, 20 Echinoidea and 18 Holothuroidea). In this study, seven echinoderm species are reported for the first time from the Levantine coast of Turkey. These are, five ophiroid species; Amphipholis squamata, Amphiura chiajei, Amphiura filiformis, Ophiopsila aranea, and Ophiothrix quinquemaculata and two echinoid species; Echinocyamus pusillus and Stylocidaris affinis. Turkey is surrounded by four seas with different hydrographical characteristics and Turkish Straits System (Çanakkale Strait, Marmara Sea and İstanbul Strait) serve both as a biological corridor and barrier between the Aegean and Black Seas. The number of echinoderm species in the coasts of Turkey also varies due to the different biotic environments of these seas. There are 14 echinoderm species reported from the Black Sea, 19 species from the İstanbul Strait, 51 from the Marmara Sea, 71 from the Aegean Sea and 42 from the Levantine coasts of Turkey. Among these species, Asterias rubens, Ophiactis savignyi, Diadema setosum, and Synaptula reciprocans are alien species for the Turkish coasts. Key words: Echinodermata, new records, Levantine Sea, Turkey. Cairo International Covention Center , Egypt , 16 - 18 – October , (2008), pp. 571 - 581 Elif Özgür et al. -
New Ssrna Virus Family Infecting Dinoflagellates: Alvernaviridae (E.G
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc Code assigned: 2009.016a-iP (to be completed by ICTV officers) Short title: New ssRNA virus family infecting dinoflagellates: Alvernaviridae (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 9 are required) 6 7 8 9 Author(s) with e-mail address(es) of the proposer: Keizo Nagasaki ([email protected]), Yuji Tomaru ([email protected]) Has this proposal has been seen and agreed by the relevant study group(s)? Please select answer in the box on the right Yes ICTV-EC or Study Group comments and response of the proposer: Date first submitted to ICTV: Date of this revision (if different to above): Page 1 of 11 MODULE 2: NEW SPECIES Part (a) to create and name one or more new species. If more than one, they should be a group of related species belonging to the same genus (see Part b) Code 2009.016aP (assigned by ICTV officers) To create 1 new species with the name(s): Heterocapsa circularisquama RNA virus 01 Part (b) assigning new species to higher taxa All new species must be assigned to a higher taxon. -
Meta-Transcriptomic Detection of Diverse and Divergent RNA Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.08.141184; this version posted June 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Meta-transcriptomic detection of diverse and divergent 2 RNA viruses in green and chlorarachniophyte algae 3 4 5 Justine Charon1, Vanessa Rossetto Marcelino1,2, Richard Wetherbee3, Heroen Verbruggen3, 6 Edward C. Holmes1* 7 8 9 1Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and 10 Environmental Sciences and School of Medical Sciences, The University of Sydney, 11 Sydney, Australia. 12 2Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical 13 Research, Westmead, NSW 2145, Australia. 14 3School of BioSciences, University of Melbourne, VIC 3010, Australia. 15 16 17 *Corresponding author: 18 Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and 19 Environmental Sciences and School of Medical Sciences, 20 The University of Sydney, 21 Sydney, NSW 2006, Australia. 22 Tel: +61 2 9351 5591 23 Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.08.141184; this version posted June 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Morphometry and Areal Growth Cohorts of Common Epifaunal Species on a Sand Bottom of the Cilician Shelf (Turkey), Mediterranean Sea
Journal of Applied Biological Sciences 7 (2): 42-53; 2013 ISSN: 1307-1130, E-ISSN: 2146-0108, www.nobel.gen.tr Morphometry and areal growth cohorts of common epifaunal species on a sand bottom of the Cilician shelf (Turkey), Mediterranean Sea Erhan MUTLU Fisheries Faculty, Akdeniz University, Dumlupınar Bulvarı, 07050, Antalya, TURKEY *Corresponding author: Received: 03 December 2012 e-mail: [email protected] Accepted: 08 January 2013 Abstract Biometry and growth cohorts of common epifauna collected monthly with a sledge for a two year period was studied on the Cilician shelf of the Mediterranean Sea. The dimorphisms in the length-width-weight relationships were observed for the epibentic fauna due presumably to the sexes whereas biometrically dimorphic relationship was not structured for the common flat fishes. Maximum number of growth cohorts changed between >C2 (Buglossidium luteum) and >C4 (Arnoglossus laterna) for the flatfishes. Nine cohorts coexisted for a hermit crab, a crustacean species. Three muricid (Mollusca) species were classified with maximum number of cohort up to >C2 and the nassariid gastropods as well. A Lesepsian bivalve, Pinctada radiata displayed two growth cohorts, and three cohorts based on disc thickness of a seastar (Astropecten irregularis). Key words: Epifauna, biometry, growth cohorts, distribution, Cilician shelf, Eastern Mediterranean Sea. INTRODUCTION consideration for the growth issues. Different body parts play crucial function in growth as the specimens grow up; The population stock estimators, bioassay for instance, sub-adults or juveniles of Strombus experimentalists, ecosystem modelers and ecologists have (Conomurex) persicus grow in length of shell whereas the interested one of marine population dynamic parameters, adults are stopped in growth of shell length after a certain growth and growth-related parameters (i.e.