Six Species of the Bothid Genera Tosarhombus and P
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Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Parasites of Coral Reef Fish: How Much Do We Know? with a Bibliography of Fish Parasites in New Caledonia
Belg. J. Zool., 140 (Suppl.): 155-190 July 2010 Parasites of coral reef fish: how much do we know? With a bibliography of fish parasites in New Caledonia Jean-Lou Justine (1) UMR 7138 Systématique, Adaptation, Évolution, Muséum National d’Histoire Naturelle, 57, rue Cuvier, F-75321 Paris Cedex 05, France (2) Aquarium des lagons, B.P. 8185, 98807 Nouméa, Nouvelle-Calédonie Corresponding author: Jean-Lou Justine; e-mail: [email protected] ABSTRACT. A compilation of 107 references dealing with fish parasites in New Caledonia permitted the production of a parasite-host list and a host-parasite list. The lists include Turbellaria, Monopisthocotylea, Polyopisthocotylea, Digenea, Cestoda, Nematoda, Copepoda, Isopoda, Acanthocephala and Hirudinea, with 580 host-parasite combinations, corresponding with more than 370 species of parasites. Protozoa are not included. Platyhelminthes are the major group, with 239 species, including 98 monopisthocotylean monogeneans and 105 digeneans. Copepods include 61 records, and nematodes include 41 records. The list of fish recorded with parasites includes 195 species, in which most (ca. 170 species) are coral reef associated, the rest being a few deep-sea, pelagic or freshwater fishes. The serranids, lethrinids and lutjanids are the most commonly represented fish families. Although a list of published records does not provide a reliable estimate of biodiversity because of the important bias in publications being mainly in the domain of interest of the authors, it provides a basis to compare parasite biodiversity with other localities, and especially with other coral reefs. The present list is probably the most complete published account of parasite biodiversity of coral reef fishes. -
Annadel Cabanban Emily Capuli Rainer Froese Daniel Pauly
Biodiversity of Southeast Asian Seas , Palomares and Pauly 15 AN ANNOTATED CHECKLIST OF PHILIPPINE FLATFISHES : ECOLOGICAL IMPLICATIONS 1 Annadel Cabanban IUCN Commission on Ecosystem Management, Southeast Asia Dumaguete, Philippines; Email: [email protected] Emily Capuli SeaLifeBase Project, Aquatic Biodiversity Informatics Office Khush Hall, IRRI, Los Baños, Laguna, Philippines; Email: [email protected] Rainer Froese IFM-GEOMAR, University of Kiel Duesternbrooker Weg 20, 24105 Kiel, Germany; Email: [email protected] Daniel Pauly The Sea Around Us Project , Fisheries Centre, University of British Columbia, 2202 Main Mall, Vancouver, British Columbia, Canada, V6T 1Z4; Email: [email protected] ABSTRACT An annotated list of the flatfishes of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by FishBase, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. INTRODUCTION Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
An Annotated Checklist of Philippine Flatfish: Ecological Implications3'
An Annotated Checklist of Philippine Flatfish: Ecological Implications3' A. Cabanbanb) E. Capulic) R. Froesec) and D. Pauly1" Abstract An annotated list of the flatfish of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by the FishBase CD-ROM, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. a) For presentation at the Third International Symposium on Flatfish Ecology, 2-8 November 1996, Netherlands Institute for Sea Research (NIOZ), Texel, The Netherlands. ICLARM Contribution No. 1321. b> Borneo Marine Research Unit, Universiti Malaysia Sabah, 9th Floor Gaya Centre, Jalan Tun Fuad Stephens, Locked Bag 2073, 88999 Kota Kinabalu, Sabah, Malaysia. c) International Center for Living Aquatic Resources Management (ICLARM), MCPO Box 2631, 0718 Makati City, Philippines. d) Fisheries Centre, University of British Columbia, 2204 Main Mall, Vancouver, B.C. Canada V6T 1Z4. E- mail: [email protected]. Introduction Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
LJMU Research Online
LJMU Research Online Collins, RA, Bakker, J, Wangensteen, OS, Soto, AZ, Corrigan, L, Sims, DW, Genner, MJ and Mariani, S Non‐ specific amplification compromises environmental DNA metabarcoding with COI http://researchonline.ljmu.ac.uk/id/eprint/11575/ Article Citation (please note it is advisable to refer to the publisher’s version if you intend to cite from this work) Collins, RA, Bakker, J, Wangensteen, OS, Soto, AZ, Corrigan, L, Sims, DW, Genner, MJ and Mariani, S (2019) Non‐ specific amplification compromises environmental DNA metabarcoding with COI. Methods in Ecology and Evolution. ISSN 2041-210X LJMU has developed LJMU Research Online for users to access the research output of the University more effectively. Copyright © and Moral Rights for the papers on this site are retained by the individual authors and/or other copyright owners. Users may download and/or print one copy of any article(s) in LJMU Research Online to facilitate their private study or for non-commercial research. You may not engage in further distribution of the material or use it for any profit-making activities or any commercial gain. The version presented here may differ from the published version or from the version of the record. Please see the repository URL above for details on accessing the published version and note that access may require a subscription. For more information please contact [email protected] http://researchonline.ljmu.ac.uk/ LJMU Research Online Collins, RA, Bakker, J, Wangensteen, OS, Soto, AZ, Corrigan, L, Sims, DW, Genner, MJ and Mariani, S Non‐ specific amplification compromises environmental DNA metabarcoding with COI http://researchonline.ljmu.ac.uk/id/eprint/11575/ Article Citation (please note it is advisable to refer to the publisher’s version if you intend to cite from this work) Collins, RA, Bakker, J, Wangensteen, OS, Soto, AZ, Corrigan, L, Sims, DW, Genner, MJ and Mariani, S Non‐ specific amplification compromises environmental DNA metabarcoding with COI. -
DEEPFISHMAN Document 5 : Review of Parasites, Pathogens
DEEPFISHMAN Management And Monitoring Of Deep-sea Fisheries And Stocks Project number: 227390 Small or medium scale focused research action Topic: FP7-KBBE-2008-1-4-02 (Deepsea fisheries management) DEEPFISHMAN Document 5 Title: Review of parasites, pathogens and contaminants of deep sea fish with a focus on their role in population health and structure Due date: none Actual submission date: 10 June 2010 Start date of the project: April 1st, 2009 Duration : 36 months Organization Name of lead coordinator: Ifremer Dissemination Level: PU (Public) Date: 10 June 2010 Review of parasites, pathogens and contaminants of deep sea fish with a focus on their role in population health and structure. Matt Longshaw & Stephen Feist Cefas Weymouth Laboratory Barrack Road, The Nothe, Weymouth, Dorset DT4 8UB 1. Introduction This review provides a summary of the parasites, pathogens and contaminant related impacts on deep sea fish normally found at depths greater than about 200m There is a clear focus on worldwide commercial species but has an emphasis on records and reports from the north east Atlantic. In particular, the focus of species following discussion were as follows: deep-water squalid sharks (e.g. Centrophorus squamosus and Centroscymnus coelolepis), black scabbardfish (Aphanopus carbo) (except in ICES area IX – fielded by Portuguese), roundnose grenadier (Coryphaenoides rupestris), orange roughy (Hoplostethus atlanticus), blue ling (Molva dypterygia), torsk (Brosme brosme), greater silver smelt (Argentina silus), Greenland halibut (Reinhardtius hippoglossoides), deep-sea redfish (Sebastes mentella), alfonsino (Beryx spp.), red blackspot seabream (Pagellus bogaraveo). However, it should be noted that in some cases no disease or contaminant data exists for these species. -
Species Divers. 19(2): 91-96
Species Diversity 19: 91–96 Engyprosopon praeteritus from Australia 91 25 November 2014 DOI: 10.12782/sd.19.2.091 The Australian Sinistral Flounder Arnoglossus aspilos praeteritus (Actinopterygii: Pleuronectiformes: Bothidae) Reassigned as a Valid Species of Engyprosopon Kunio Amaoka1,3 and Peter R. Last2 1 Hokkaido University, 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan E-mail: [email protected] 2 Wealth from Oceans Flagship, CSIRO Marine and Atmospheric Research, GPO Box 1538, Hobart Tasmania 7001, Australia E-mail: [email protected] 3 Corresponding author (Received 24 March 2014; Accepted 26 September 2014) Nine specimens of a flatfish collected from Western Australia were tentatively identified as Arnoglossus aspilos praeteri- tus Whitley, 1950. The original description of this subspecies is brief and the validity of the taxon had not been investigated, despite its inclusion in subsequent short notes and lists. Our examination of the new material and the type series of A. aspi- los praeteritus reveals that this taxon clearly differs from the members of the genus Arnoglossus in having a well-defined in- terorbital space and split hypurals. It differs subtly from A. aspilos (Bleeker, 1851) in appearance, although both taxa closely resemble each other in most counts and proportional measurements. Arnoglossus aspilos praeteritus is herein redescribed and reassigned as a valid species of the genus Engyprosopon, viz., E. praeteritus. This species differs from other species of Engyrposopon in having a series of dark blotches on the dorsal and anal fins and a pair of small black blotches on the caudal fin, and by lacking sexual differences in morphology and coloration. -
Early Ontogeny and Systematics of Bothidae, Pleuronectoidei
BULLETIN OF MARINE SCIENCE, 60(1): 192-212,1997 EARLY ONTOGENY AND SYSTEMATICS OF BOTHIDAE, PLEURONECTOIDEI Atsushi Fukui ABSTRACT Of the 20 bothid genera, larvae of the following 16 genera are presently known: Taeniop- settinae, (1) Taeniopsella, (2) Engyophrys, (3) Trichopsetta; Bothinae, (4) Parabothus, (5) Tosarhombus, (6) Crossorhombus, (7) Engyprosopon, (8) Bothus, (9) Grammatobothus, (10) Asterorhombus, (11) Psellina, (12) Lophonectes, (13) Arnoglossus, (14) Monolene, (15) Laeops, (16) Chascanopsetta, This study reviews the early ontogeny and systematics of bothids of the world. A cladistic analysis of 16 characters results in 25 equally parsimonious trees. A strict consensus tree for these 25 trees is shown. It has resolved two monophyletic groups and unresolved polytomy at basal nodes. The two monophyletic groups indicate that (1) Asterorhombu,\' and Engyprosopon except sp.2 of the subfamily Bothinae are sister group for the subfamily Taeniopsettinae, (2) Arnoglossus and Engyprosopon is not monophyletic, and (3) Taeniopsetta, Engyophrys, and Trichopsetta of the subfamily Taeniopsettinae are monophyletic. Fishes of the family Bothidae, suborder Pleuronectoidei, are very diverse, being comprised of 20 genera in two subfamilies, four in Taeniopsettinae and 16 in Bothinae (Amaoka, 1969; Ahlstrom et aI., 1984), The larvae of this family have a transparent, extremely compressed, body. The dorsal fin begins anterior to the eye, its second ray being elongated. The pelagic larvae are the largest among the pleuronectoid fishes, e.g., Chascanopsetta lu- gubris with 120-mm larvae, Many studies have been made on bothid larvae, e.g" Amaoka (1964, 1970, 1971a, 1972, 1973, 1974, 1976), Futch (1977), and Hensley (1977). Ahlstrom et aI. (1984) reviewed these studies. -
The Kagoshima University Museum No
Bulletin of the Kagoshima University Museum No. 9 A total of 1,277 species, including 129 species that represent the first reliable records from the island on the basis of Annotated Checklist of Marine and Freshwater Fishes Yaku-shima Island ISSN-L 2188-9074 collected specimens and/or underwater photographs, are listed with citation of literature, registration numbers, sizes, ANNOTATED CHECKLIST OF MARINE AND FRESHWATER FISHES OF localities in the island, and nomenclatural, taxonomic, and ecological remarks. Color photographs of all the 129 YAKU-SHIMA ISLAND IN THE OSUMI ISLANDS, species newly recorded from the island are provided. KAGOSHIMA, SOUTHERN JAPAN, WITH 129 NEW RECORDS HIROYUKI MOTOMURA AND SHIGERU HARAZAKI Hiroyuki Motomura • Shigeru Harazaki February 2017 The Kagoshima University Museum Cover photograph: Cephalopholis sonnerati in a wreck off Isso, Yaku-shima island. Photo by S. Harazaki Back cover photograph: Males of Pseudanthias hypselosoma at 15 m depth off Isso, Yaku-shima island. Photo by S. Harazaki Bulletin of the Kagoshima University Museum No. 9 ISSN-L 2188-9074 Annotated checklist of marine and freshwater fishes of Yaku-shima island in the Osumi Islands, Kagoshima, southern Japan, with 129 new records Hiroyuki Motomura1, 3 and Shigeru Harazaki2 1The Kagoshima University Museum, 1–21–30 Korimoto, Kagoshima 890–0065, Japan E-mail: [email protected] 2Yakushima Diving Service “Mori to Umi”, 2473–294 Miyanoura, Yakushima, Kumage, Kagoshima 891–4205, Japan 3Corresponding author Abstract The second edition of an annotated checklist of marine and freshwater fishes of Yaku-shima island in the Osumi Group, Kagoshima Prefecture, southern Japan, was compiled from specimen and literature surveys. -
Fauna of Cobalt-Rich Ferromanganese Crust Seamounts Technical Study: No
Fauna of Cobalt-Rich Ferromanganese Crust Seamounts Technical Study: No. 8 ISA TECHNICAL STUDY SERIES Technical Study No. 1 Global Non-Living Resources on the Extended Continental Shelf: Prospects at the year 2000 Technical Study No. 2 Polymetallic Massive Sulphides and Cobalt-Rich Ferromanganese Crusts: Status and Prospects Technical Study No. 3 Biodiversity, Species Ranges and Gene Flow in the Abyssal Pacific Nodule Province: Predicting and Managing the Impacts of Deep Seabed Mining Technical Study No. 4 Issues associated with the Implementation of Article 82 of the United Nations Convention on the Law of the Sea Technical Study No. 5 Non-Living Resources of the Continental Shelf Beyond 200 Nautical Miles: Speculations on the Implementation of Article 82 of the United Nations Convention on the Law of the Sea Technical Study No. 6 A Geological Model of Polymetallic Nodule Deposits in the Clarion-Clipperton Fracture Zone Technical Study No. 7 Marine Benthic Nematode Molecular Protocol Handbook (Nematode Barcoding) Fauna of Cobalt-Rich Ferromanganese Crust Seamounts ISA TECHNICAL STUDY: No. 8 International Seabed Authority Kingston, Jamaica The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Secretariat of the International Seabed Authority concerning the legal status of any country or territory or of its authorities, or concerning the delimitation of its frontiers or maritime boundaries. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the copyright owner. -
Flatfishes from the Waters Around New Caledonia: a Revision of the Genus
_ RÉSULTATS DES CAMPAGNES MUSORSTOM, VOLUME Il - RÉSULTATS DES CAMPAGNES MUSORSTOM, VOLUME 11 - RÉSULTATS DES CAl 7 Pisces, Pleuronectiformes : Flatfishes from the waters around New Caledonia. -A revision of the genus Engyprosopon Kunio AMAOKA, Eiji MIHARA Laboratory of Marine Zoology Faculty of Fisheries, Hokkaido University Hakodate, Hokkaido 041, Japan & Jacques RIVATON ORSTOM B. P. AS Nouméa Cedex New Caledonia ABSTRACT Species of the bothid genus Engyprosopon collected from the waters around New Caledonia are reviewed. Nine species are described and an identification key provided : E. sep/empes sp. nov., E. ros/ra/um sp. nov., E. be/lonaensis sp. nov., E. longip/erum sp. nov., E. macrolepis, E. hureaui, E. xys/rias, E. grandisquamum and E. maldivensis. Records of E. macrolepis, E. hureaui, and E. xys/rias are new for this region. Sexual dimorphism and relationships are discussed for each species. Based on comparisons of type specimens, Engyprosopon maculipinnis, E. borneensis and E. macrop/era are shown to he junior synonyms of E. maldivensis. RÉSUMÉ Pisces, Pleuronectiformes : Poissons plats des eaux de la Nouvelle-Calédonie. - Révision du genre Engyprosopon. Les neuf espèces du genre Engyprosopon, récoltées dans les eaux entourant la Nouvelle-Calédonie, sont ici révisées. Une clé de détermination vient compléter la description des espèces: E. sep/empes sp. nov., E. ros/ra/um sp. nov., E. bellonaensis sp. nov., E. longip/erum sp. nov., E. macrolepis, E. hureaui, E. xys/rias, E. grandisquamum et E. maldivensis. E. macrolepis, E. hureaui et E. xyslrias sont signalés pour la première fois dans la région. Le dimorphisme sexuel, les caractères méristiques et les données biométriques sont étudiés pour chaque espèce. -
<I>Parabothus Taiwanensis</I>
BULLETIN OF MARINE SCIENCE, 53(3): 1042-1047, 1993 A NEW BOTHID FLATFISH PARABOTHUS TAIWANENSIS COLLECTED FROM TAIWAN (PLEURONECTIFORMES: BOTHIDAE) Kunio Amaoka and Shih Chieh Shen ABSTRACT A new bothid flatfish, Parabothus taiwanensis, collected from the southwestern and north- eastern coasts of Taiwan is described from five specimens. It is characterized by having a low number of scales in the lateral line (61-62), biserial teeth on the upper jaw, and a knob on the snout tip and the mandibular symphysis in males. Although the generic placement of taiwanensis is uncertain, this species is tentatively considered as a species of Parabothus because of moderate interorbital width in male and moderate body depth. In 1989, the senior author obtained two bothid specimens from a fish market near Kaohsiung, southem Taiwan. These fish were found to be very similar to specimens previously described under the names "Parabothus sp." and "Cros- sorhombus sp." by the junior author (Shen, 1983, 1984a, 1984b). Further ex- amination revealed that all of these specimens were mature males and a juvenile of an undescribed species of Parabothus. This paper provides a detailed descrip- tion of this new species. Counts and measurements follow those of Hubbs and Lagler (1974). Length of the pelvic-fin base was measured from the base of the first ray to that of the sixth ray. Vertebrae were counted from soft X-ray film. Institutional abbreviations follow Leviton et al. (1985). Parabothus taiwanensis new species Figure 1 Parabothus sp.: Shen, 1983: 13, fig. 15; Shen, 1984a: 135, pI. 438-13; Shen, 1984b: 443, 447, I fig.