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Exhaustive Reanalysis of Barcode Sequences from Public
Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution: a case study of the Sea Lettuce. Antoine Fort1, Marcus McHale1, Kevin Cascella2, Philippe Potin2, Marie-Mathilde Perrineau3, Philip Kerrison3, Elisabete da Costa4, Ricardo Calado4, Maria Domingues5, Isabel Costa Azevedo6, Isabel Sousa-Pinto6, Claire Gachon3, Adrie van der Werf7, Willem de Visser7, Johanna Beniers7, Henrice Jansen7, Michael Guiry1, and Ronan Sulpice1 1NUI Galway 2Station Biologique de Roscoff 3Scottish Association for Marine Science 4University of Aveiro 5Universidade de Aveiro 6University of Porto Interdisciplinary Centre of Marine and Environmental Research 7Wageningen University & Research November 24, 2020 Abstract Sea Lettuce (Ulva spp.; Ulvophyceae, Ulvales, Ulvaceae) is an important ecological and economical entity, with a worldwide distribution and is a well-known source of near-shore blooms blighting many coastlines. Species of Ulva are frequently misiden- tified in public repositories, including herbaria and gene banks, making species identification based on traditional barcoding hazardous. We investigated the species distribution of 295 individual distromatic foliose strains from the North East Atlantic by traditional barcoding or next generation sequencing. We found seven distinct species, and compared our results with all worldwide Ulva spp sequences present in the NCBI database for the three barcodes rbcL, tuf A and the ITS1. Our results demonstrate a large degree of species misidentification in the NCBI database. We estimate that 21% of the entries pertaining to foliose species are misannotated. In the extreme case of U. lactuca, 65% of the entries are erroneously labelled specimens of another Ulva species, typically U. fenestrata. In addition, 30% of U. -
Blidingia Marginata (J.Agardh) P.J.L.Dangeard Ex Bliding, 1963
Blidingia marginata (J.Agardh) P.J.L.Dangeard ex Bliding, 1963 AphiaID: 145949 . Viridiplantae (Subreino) > Chlorophytina (Subdivisao) Sinónimos Blidingia marginata var. longior (Kützing) ? Enteromorpha complanata var. confervacea Kützing, 1845 Enteromorpha intestinalis var. micrococca (Kützing) Rosenvinge Enteromorpha marginata J.Agardh, 1842 Enteromorpha marginata var. longior Kützing Enteromorpha micrococca Kützing, 1856 Enteromorpha micrococca f. typica Kjellman Enteromorpha nana var. marginata (J.Agardh) V.J.Chapman, 1956 Referências additional source Guiry, M.D. & Guiry, G.M. (2017). AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. , available online at http://www.algaebase.org [details] additional source Integrated Taxonomic Information System (ITIS). , available online at http://www.itis.gov [details] basis of record Guiry, M.D. (2001). Macroalgae of Rhodophycota, Phaeophycota, Chlorophycota, and two genera of Xanthophycota, in: Costello, M.J. et al. (Ed.) (2001). European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels, 50: pp. 20-38[details] additional source Linkletter, L. E. (1977). A checklist of marine fauna and flora of the Bay of Fundy. Huntsman Marine Laboratory, St. Andrews, N.B. 68: p. [details] additional source Sears, J.R. (ed.). 1998. NEAS keys to the benthic marine algae of the northeastern coast of North America from Long Island Sound to the Strait of Belle Isle. Northeast Algal Society. 163 p. [details] 1 additional source Muller, Y. (2004). Faune et flore du littoral du Nord, du Pas-de-Calais et de la Belgique: inventaire. [Coastal fauna and flora of the Nord, Pas-de-Calais and Belgium: inventory]. -
Successions of Phytobenthos Species in a Mediterranean Transitional Water System: the Importance of Long Term Observations
A peer-reviewed open-access journal Nature ConservationSuccessions 34: 217–246 of phytobenthos (2019) species in a Mediterranean transitional water system... 217 doi: 10.3897/natureconservation.34.30055 RESEARCH ARTICLE http://natureconservation.pensoft.net Launched to accelerate biodiversity conservation Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations Antonella Petrocelli1, Ester Cecere1, Fernando Rubino1 1 Water Research Institute (IRSA) – CNR, via Roma 3, 74123 Taranto, Italy Corresponding author: Antonella Petrocelli ([email protected]) Academic editor: A. Lugliè | Received 25 September 2018 | Accepted 28 February 2019 | Published 3 May 2019 http://zoobank.org/5D4206FB-8C06-49C8-9549-F08497EAA296 Citation: Petrocelli A, Cecere E, Rubino F (2019) Successions of phytobenthos species in a Mediterranean transitional water system: the importance of long term observations. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 217–246. https://doi.org/10.3897/ natureconservation.34.30055 Abstract The availability of quantitative long term datasets on the phytobenthic assemblages of the Mar Piccolo of Taranto (southern Italy, Mediterranean Sea), a lagoon like semi-enclosed coastal basin included in the Italian LTER network, enabled careful analysis of changes occurring in the structure of the community over about thirty years. The total number of taxa differed over the years. Thirteen non-indigenous species in total were found, their number varied over the years, reaching its highest value in 2017. The dominant taxa differed over the years. -
Copyright© 2017 Mediterranean Marine Science
Mediterranean Marine Science Vol. 18, 2017 Introduced marine macroflora of Lebanon and its distribution on the Levantine coast BITAR G. Lebanese University, Faculty of Sciences, Hadaeth, Beirut, Lebanon RAMOS-ESPLÁ A. Centro de Investigación Marina de Santa Pola (CIMAR), Universidad de Alicante, 03080 Alicante OCAÑA O. Departamento de Oceanografía Biológica y Biodiversidad, Fundación Museo del Mar, Muelle Cañonero Dato s.n, 51001 Ceuta SGHAIER Y. Regional Activity Centre for Specially Protected Areas (RAC/SPA) FORCADA A. Departamento de Ciencias del Mar y Biología Aplicada, Universidad de Alicante, Po Box 99, Edificio Ciencias V, Campus de San Vicente del Raspeig, E-03080, Alicante VALLE C. Departamento de Ciencias del Mar y Biología Aplicada, Universidad de Alicante, Po Box 99, Edificio Ciencias V, Campus de San Vicente del Raspeig, E-03080, Alicante EL SHAER H. IUCN (International Union for Conservation of Nature), Regional Office for West Asia Sweifiyeh, Hasan Baker Al Azazi St. no 20 - Amman VERLAQUE M. Aix Marseille University, CNRS/INSU, Université de Toulon, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, GIS Posidonie, 13288 Marseille http://dx.doi.org/10.12681/mms.1993 Copyright © 2017 Mediterranean Marine Science http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 04/08/2019 04:30:09 | To cite this article: BITAR, G., RAMOS-ESPLÁ, A., OCAÑA, O., SGHAIER, Y., FORCADA, A., VALLE, C., EL SHAER, H., & VERLAQUE, M. (2017). Introduced marine macroflora of Lebanon and its distribution on the Levantine coast. Mediterranean Marine Science, 18(1), 138-155. doi:http://dx.doi.org/10.12681/mms.1993 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 04/08/2019 04:30:09 | Review Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.1993 The introduced marine macroflora of Lebanon and its distribution on the Levantine coast G. -
DNA Barcoding of the German Green Supralittoral Zone Indicates the Distribution and Phenotypic Plasticity of Blidingia Species and Reveals Blidingia Cornuta Sp
TAXON 70 (2) • April 2021: 229–245 Steinhagen & al. • DNA barcoding of German Blidingia species SYSTEMATICS AND PHYLOGENY DNA barcoding of the German green supralittoral zone indicates the distribution and phenotypic plasticity of Blidingia species and reveals Blidingia cornuta sp. nov. Sophie Steinhagen,1,2 Luisa Düsedau1 & Florian Weinberger1 1 GEOMAR Helmholtz Centre for Ocean Research Kiel, Marine Ecology Department, Düsternbrooker Weg 20, 24105 Kiel, Germany 2 Department of Marine Sciences-Tjärnö, University of Gothenburg, 452 96 Strömstad, Sweden Address for correspondence: Sophie Steinhagen, [email protected] DOI https://doi.org/10.1002/tax.12445 Abstract In temperate and subarctic regions of the Northern Hemisphere, green algae of the genus Blidingia are a substantial and environment-shaping component of the upper and mid-supralittoral zones. However, taxonomic knowledge on these important green algae is still sparse. In the present study, the molecular diversity and distribution of Blidingia species in the German State of Schleswig-Holstein was examined for the first time, including Baltic Sea and Wadden Sea coasts and the off-shore island of Helgo- land (Heligoland). In total, three entities were delimited by DNA barcoding, and their respective distributions were verified (in decreasing order of abundance: Blidingia marginata, Blidingia cornuta sp. nov. and Blidingia minima). Our molecular data revealed strong taxonomic discrepancies with historical species concepts, which were mainly based on morphological and ontogenetic char- acters. Using a combination of molecular, morphological and ontogenetic approaches, we were able to disentangle previous mis- identifications of B. minima and demonstrate that the distribution of B. minima is more restricted than expected within the examined area. -
New Records of Benthic Marine Algae and Cyanobacteria for Costa Rica, and a Comparison with Other Central American Countries
Helgol Mar Res (2009) 63:219–229 DOI 10.1007/s10152-009-0151-1 ORIGINAL ARTICLE New records of benthic marine algae and Cyanobacteria for Costa Rica, and a comparison with other Central American countries Andrea Bernecker Æ Ingo S. Wehrtmann Received: 27 August 2008 / Revised: 19 February 2009 / Accepted: 20 February 2009 / Published online: 11 March 2009 Ó Springer-Verlag and AWI 2009 Abstract We present the results of an intensive sampling Rica; we discuss this result in relation to the emergence of program carried out from 2000 to 2007 along both coasts of the Central American Isthmus. Costa Rica, Central America. The presence of 44 species of benthic marine algae is reported for the first time for Costa Keywords Marine macroalgae Á Cyanobacteria Á Rica. Most of the new records are Rhodophyta (27 spp.), Costa Rica Á Central America followed by Chlorophyta (15 spp.), and Heterokontophyta, Phaeophycea (2 spp.). Overall, the currently known marine flora of Costa Rica is comprised of 446 benthic marine Introduction algae and 24 Cyanobacteria. This species number is an under estimation, and will increase when species of benthic The marine benthic flora plays an important role in the marine algae from taxonomic groups where only limited marine environment. It forms the basis of many marine information is available (e.g., microfilamentous benthic food chains and harbors an impressive variety of organ- marine algae, Cyanobacteria) are included. The Caribbean isms. Fish, decapods and mollusks are among the most coast harbors considerably more benthic marine algae (318 prominent species associated with the marine flora, which spp.) than the Pacific coast (190 spp.); such a trend has serves these animals as a refuge and for alimentation (Hay been observed in all neighboring countries. -
Plate. Acetabularia Schenckii
Training in Tropical Taxonomy 9-23 July, 2008 Tropical Field Phycology Workshop Field Guide to Common Marine Algae of the Bocas del Toro Area Margarita Rosa Albis Salas David Wilson Freshwater Jesse Alden Anna Fricke Olga Maria Camacho Hadad Kevin Miklasz Rachel Collin Andrea Eugenia Planas Orellana Martha Cecilia Díaz Ruiz Jimena Samper Villareal Amy Driskell Liz Sargent Cindy Fernández García Thomas Sauvage Ryan Fikes Samantha Schmitt Suzanne Fredericq Brian Wysor From July 9th-23rd, 2008, 11 graduate and 2 undergraduate students representing 6 countries (Colombia, Costa Rica, El Salvador, Germany, France and the US) participated in a 15-day Marine Science Network-sponsored workshop on Tropical Field Phycology. The students and instructors (Drs. Brian Wysor, Roger Williams University; Wilson Freshwater, University of North Carolina at Wilmington; Suzanne Fredericq, University of Louisiana at Lafayette) worked synergistically with the Smithsonian Institution's DNA Barcode initiative. As part of the Bocas Research Station's Training in Tropical Taxonomy program, lecture material included discussions of the current taxonomy of marine macroalgae; an overview and recent assessment of the diagnostic vegetative and reproductive morphological characters that differentiate orders, families, genera and species; and applications of molecular tools to pertinent questions in systematics. Instructors and students collected multiple samples of over 200 algal species by SCUBA diving, snorkeling and intertidal surveys. As part of the training in tropical taxonomy, many of these samples were used by the students to create a guide to the common seaweeds of the Bocas del Toro region. Herbarium specimens will be contributed to the Bocas station's reference collection and the University of Panama Herbarium. -
Marine Macroalgal Biodiversity of Northern Madagascar: Morpho‑Genetic Systematics and Implications of Anthropic Impacts for Conservation
Biodiversity and Conservation https://doi.org/10.1007/s10531-021-02156-0 ORIGINAL PAPER Marine macroalgal biodiversity of northern Madagascar: morpho‑genetic systematics and implications of anthropic impacts for conservation Christophe Vieira1,2 · Antoine De Ramon N’Yeurt3 · Faravavy A. Rasoamanendrika4 · Sofe D’Hondt2 · Lan‑Anh Thi Tran2,5 · Didier Van den Spiegel6 · Hiroshi Kawai1 · Olivier De Clerck2 Received: 24 September 2020 / Revised: 29 January 2021 / Accepted: 9 March 2021 © The Author(s), under exclusive licence to Springer Nature B.V. 2021 Abstract A foristic survey of the marine algal biodiversity of Antsiranana Bay, northern Madagas- car, was conducted during November 2018. This represents the frst inventory encompass- ing the three major macroalgal classes (Phaeophyceae, Florideophyceae and Ulvophyceae) for the little-known Malagasy marine fora. Combining morphological and DNA-based approaches, we report from our collection a total of 110 species from northern Madagas- car, including 30 species of Phaeophyceae, 50 Florideophyceae and 30 Ulvophyceae. Bar- coding of the chloroplast-encoded rbcL gene was used for the three algal classes, in addi- tion to tufA for the Ulvophyceae. This study signifcantly increases our knowledge of the Malagasy marine biodiversity while augmenting the rbcL and tufA algal reference libraries for DNA barcoding. These eforts resulted in a total of 72 new species records for Mada- gascar. Combining our own data with the literature, we also provide an updated catalogue of 442 taxa of marine benthic -
Codium Pulvinatum (Bryopsidales, Chlorophyta), a New Species from the Arabian Sea, Recently Introduced Into the Mediterranean Sea
Phycologia Volume 57 (1), 79–89 Published 6 November 2017 Codium pulvinatum (Bryopsidales, Chlorophyta), a new species from the Arabian Sea, recently introduced into the Mediterranean Sea 1 2 3 4 5 RAZY HOFFMAN *, MICHAEL J. WYNNE ,TOM SCHILS ,JUAN LOPEZ-BAUTISTA AND HEROEN VERBRUGGEN 1School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv 69978, Israel 2University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108, USA 3University of Guam Marine Laboratory, Mangilao, Guam 96923, USA 4Biological Sciences, University of Alabama, Box 35487, Tuscaloosa, Alabama 35487, USA 5School of Biosciences, University of Melbourne, Victoria 3010, Australia ABSTRACT: Codium pulvinatum sp. nov. (Bryopsidales, Chlorophyta) is described from the southern shores of Oman and from the Mediterranean shore of Israel. The new species has a pulvinate to mamillate–globose habit and long narrow utricles. Molecular data from the rbcL gene show that the species is distinct from closely related species, and concatenated rbcL and rps3–rpl16 sequence data show that it is not closely related to other species with similar external morphologies. The recent discovery of well-established populations of C. pulvinatum along the central Mediterranean coast of Israel suggests that it is a new Lessepsian migrant into the Mediterranean Sea. The ecology and invasion success of the genus Codium, now with four alien species reported for the Levantine Sea, and some ecological aspects are also discussed in light of the discovery of the new species. KEY WORDS: Codium pulvinatum, Israel, Lessepsian migrant, Levantine Sea, Oman, rbcL, rps3–rpl16 INTRODUCTION updated), except for ‘TAU’. All investigated specimens are listed in Table S1 (collecting data table). -
Marine Algal Flora of São Miguel Island, Azores
Biodiversity Data Journal 9: e64969 doi: 10.3897/BDJ.9.e64969 Data Paper Marine algal flora of São Miguel Island, Azores Ana I Azevedo Neto‡‡, Ignacio Moreu , Edgar F. Rosas Alquicira§, Karla León-Cisneros|, Eva Cacabelos¶,‡, Andrea Z Botelho#, Joana Micael ¤, Ana C Costa#, Raul M. A. Neto«, José M. N. Azevedo‡, Sandra Monteiro#, Roberto Resendes»,˄ Pedro Afonso , Afonso C. L. Prestes‡, Rita F. Patarra˅,‡, Nuno V. Álvaro¦, David Milla-Figueras˄, Enric Ballesterosˀ, Robert L. Fletcherˁ, William Farnhamˁ, Ian Tittley ₵, Manuela I. Parente# ‡ cE3c - Centre for Ecology, Evolution and Environmental Changes/Azorean Biodiversity Group, Faculdade de Ciências e Tecnologia, Departamento de Biologia, Universidade dos Açores, 9500-321 Ponta Delgada, Açores, Portugal § Lane Community College, 4000 East 30th Ave., Eugene, Oregon, United States of America | Universidad Autónoma de Baja California Sur, Departamento Académico de Ciencias Marinas y Costeras, Carretera al Sur Km. 5.5, colonia el Mezquitito, La Paz, Baja California Sur, 23080, Mexico ¶ MARE – Marine and Environmental Sciences Centre, Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação (ARDITI), Edif. Madeira Tecnopolo, Piso 2, Caminho da Penteada, Funchal, Madeira, Portugal # CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores, Universidade dos Açores, Faculdade de Ciências e Tecnologia, Departamento de Biologia, 9500-321 Ponta Delgada, Açores, Portugal ¤ Southwest Iceland Nature Research Centre (SINRC), -
(Hymenoptera: Chalcidoidea) De La Región Neotropical
Biota Colombiana 4 (2) 123 - 145, 2003 Lista de los géneros y especies de la familia Chalcididae (Hymenoptera: Chalcidoidea) de la región Neotropical Diana C. Arias1 y Gerard Delvare2 1 Instituto de Investigación de Recursos Biológicos “Alexander von Humboldt”, AA 8693, Bogotá, D.C., Colombia. [email protected], [email protected] 2 Departamento de Faunística y Taxonomía del CIRAD, Montpellier, Francia. [email protected] Palabras Clave: Insecta, Hymenoptera, Chalcidoidea, Chalcididae, Parasitoide, Avispas Patonas, Neotrópico El orden Hymenoptera se ha dividido tradicional- La superfamilia Chalcidoidea se caracteriza por presentar mente en dos subórdenes “Symphyta” y Apocrita, este úl- en el ala anterior una venación reducida, tan solo están timo a su vez dividido en dos grupos con categoría de sec- presentes la vena submarginal, la vena marginal, la vena ción o infraorden dependiendo de los autores, denomina- estigmal y la vena postmarginal. Adicionalmente el pronoto dos “Parasitica” o también conocidos como Terebrantes y no se extiende hasta la tégula debido a que el prepecto Aculeata (Gauld & Bolton 1988). Gauld & Hanson (1995) (esclerito, en forma de sillín o herradura) se extiende hasta abandonan esta clasificación reconociendo únicamente la tégula y separa el mesopleurón del pronoto. Otra caracte- superfamilias dentro del orden. Sin embargo muchos auto- rística de este superfamilia es la presencia de un espiráculo res siguen utilizando la división tradicional porque consi- mesotorácico visible, además algunos especimenes presen- deran que es un medio práctico para separar grandes gru- tan estructuras sensoriales en uno o más de los pos de Hymenoptera en el aspecto biológico. flagelómeros. Finalmente algunas familias exhiben coloraciones metálicas (Gibson 1993). -
Redalyc.Nuevos Registros De Algas Verdes Marinas (Ulvophyceae)
Acta Botánica Mexicana ISSN: 0187-7151 [email protected] Instituto de Ecología, A.C. México Quiroz-González, Nataly; León-Álvarez, Daniel; Rivas-Acuña, Ma. Guadalupe Nuevos registros de algas verdes marinas (Ulvophyceae) para Tabasco, México Acta Botánica Mexicana, núm. 118, enero-, 2017, pp. 121-138 Instituto de Ecología, A.C. Pátzcuaro, México Disponible en: http://www.redalyc.org/articulo.oa?id=57449640007 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto 118: 121-138 Enero 2017 Artículo de investigación Nuevos registros de algas verdes marinas (Ulvophyceae) para Tabasco, México New records of marine green algae (Ulvophyceae) from Tabasco, Mexico Nataly Quiroz-González1,3 , Daniel León-Álvarez2 y Ma. Guadalupe Rivas-Acuña1 RESUMEN: 1 Universidad Juárez Autónoma de Ta- Antecedentes y Objetivos: El conocimiento de la ficoflora en el estado de Tabasco es escaso, se basco, División Académica de Ciencias Biológicas, 0.5 km carretera Cárdenas, tienen 38 registros de Rhodophyta, siete de Ochrophyta, y solo cinco de Chlorophyta. Además, a 86000 Villahermosa, Tabasco, México. nivel nacional es el estado costero con el menor número de publicaciones del tema. Se desarrolló el 2 Universidad Nacional Autónoma de presente trabajo para contribuir al conocimiento de la flora algal del estado, particularmente al de México, Facultad de Ciencias, Herbario, Chlorophyta. Laboratorio de Ficología y Sección de Al- gas, 04510 CDMX, México. Métodos: Se revisó material procedente de los herbarios de la Facultad de Ciencias de la UNAM 3 Autor para la correspondencia: (FCME) y de la Universidad Juárez Autónoma de Tabasco (UJAT).