Mendelian Genetics by Dr. Ty C.M. Hoffman
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Drosophila Melanogaster”
| PRIMER More than Meets the Eye: A Primer for “Timing of Locomotor Recovery from Anoxia Modulated by the white Gene in Drosophila melanogaster” Bradley M. Hersh1 Department of Biology, Allegheny College, Meadville, Pennsylvania 16335 ORCID ID: 0000-0003-2098-4417 (B.M.H.) SUMMARY A single gene might have several functions within an organism, and so mutational loss of that gene has multiple effects across different physiological systems in the organism. Though the white gene in Drosophila melanogaster was identified originally for its effect on fly eye color, an article by Xiao and Robertson in the June 2016 issue of GENETICS describes a function for the white gene in the response of Drosophila to oxygen deprivation. This Primer article provides background information on the white gene, the phenomenon of pleiotropy, and the molecular and genetic approaches used in the study to demonstrate a new behavioral function for the white gene. KEYWORDS education; Drosophila; pleiotropy; behavior TABLE OF CONTENTS Abstract 1369 Molecular Nature of the white Gene 1370 The Challenge of Pleiotropy 1370 Tissue-Specific Expression and RNA Interference (RNAi) 1371 Understanding the Experimental Details 1372 Establishing a behavioral phenotype 1372 Introgression: eliminating the trivial 1372 Dosage and position effect: complicating the story 1373 Molecular tricks: dissecting function and location of action 1373 Suggestions for Classroom Use 1374 Questions for Discussion 1374 HE white gene was the first Drosophila melanogaster the first attached-X and ring-X chromosome variants), is re- Tmutant discovered by Thomas Hunt Morgan in 1910, ported to have exclaimed “Oh, I do hope the white-eyed flyis following an exhaustive search for variant forms of the fly still alive” from her hospital bed after having just delivered (Morgan 1910). -
Sex – Linkage and Autosexing in Waterfowl
SEX – LINKAGE AND AUTOSEXING IN WATERFOWL CONTENTS Page The principles of sex-linkage .. .. .. .. .. .. 1 Sex-linkage in the common duck .. .. .. .. .. 3 Sex-linkage in the Muscovy duck .. .. .. .. .. 11 Sex-linkage in the common goose .. .. .. .. .. 12 Sex-linkage in the Chinese goose .. .. .. .. .. 14 Sex-linkage in the Mute swan .. .. .. .. .. .. 14 Autosexing in waterfowl .. .. .. .. .. .. 15 The Z chromosome .. .. .. .. .. .. .. 17 Summary .. .. .. .. .. .. .. .. .. 18 References .. .. .. .. .. .. .. .. .. 18 ------------------------ August 1977 F.M. Lancaster, Original draft published in the Formerly of : B.W.A. Journal – Dec. 1977 National Inst. of Poultry Husbandry, and April 1978. Harper Adam Agricultural College, Updated: November, 2016 Newport, Shropshire (Now Harper Adams University) 1 SEX – LINKAGE AND AUTOSEXING IN WATERFOWL It is only fair to state that the need for early sex determination, through sex linked crosses in waterfowl, is much less than in other classes of poultry. This is because it is easier to vent sex the day-olds of these species with very little training. Moreover, crossbreeding is rarely an option for exhibition and ornamental breeders. The exception is in commercial table duckling production where unfortunately since only white breeds are used, sex-linkage cannot be exploited. There may be some, however, who feel unable to attempt vent sexing, particularly with goslings which are more difficult to manipulate and more vulnerable to rough handling. Others may be interested in sex-linked inheritance for its own sake regardless of any practical advantage. THE PRINCIPLES OF SEX – LINKAGE Without going into too much technical detail I would like to explain the principles underlying sex-linkage. For a more detailed account of these principles the reader is referred to the excellent bulletin by Chris Hann (1966). -
Identification of Candidate ATP-Binding Cassette Transporter
www.nature.com/scientificreports OPEN Identifcation of candidate ATP- binding cassette transporter gene family members in Diaphorina citri (Hemiptera: Psyllidae) via adult tissues transcriptome analysis Zhengbing Wang 1, Fajun Tian1, Lijun Cai2, Jie Zhang2, Jiali Liu1 & Xinnian Zeng1* The ATP-binding cassette (ABC) transporters exist in all living organisms and play major roles in various biological functions by transporting a wide variety of substrates across membranes. The functions of ABC transporters in drug resistance have been extensively studied in vertebrates; however, they are rarely characterized in agricultural pests. The Asian citrus psyllid, Diaphorina citri, is one of the most damaging pests of the Citrus genus because of its transmission of Huanglongbing, also known as Yellow Dragon disease. In this study, the next-generation sequencing technique was applied to research the ABC transporters of D. citri. Fifty-three ABC transporter genes were found in the RNA-Seq data, and among these ABC transporters, 4, 4, 5, 2, 1, 4, 18 and 15 ABC proteins belonged to the ABCA-ABCH subfamilies, respectively. Diferent expression profles of 52 genes between imidacloprid-resistant and imidacloprid-susceptible strains were studied by qRT-PCR; 5 ABCGs and 4 ABCHs were signifcantly upregulated in the imidacloprid-resistant strain. In addition, fve of the nine upregulated genes were widely expressed in adult tissues in spatial expression analysis. The results suggest that these genes may play key roles in this phenotype. In general, this study contributed to our current understanding of D. citri resistance to insecticides. Te ATP-binding cassette (ABC) transporter family is one of the largest families of membrane proteins and uni- versally exists in all living organisms on Earth1. -
What Is a Recessive Allele?
What Is a Recessive Allele? WernerG. Heim ONE of the commonlymisunderstood and misin- are termedthe dominant[dominirende], and those terpreted concepts in elementary genetics is that which becomelatent in the processrecessive [reces- sive]. The expression"recessive" has been chosen of dominance and recessiveness of alleles. Many becausethe charactersthereby designated withdraw students in introductory courses perceive the idea or entirelydisappear in the hybrids,but nevertheless that the dominant form of a gene is somehow stron- reappear unchanged in their progeny ... (Mendel ger than the recessive form and, when they are 1950,p. 8) together in a heterozygote, the dominant allele sup- Two important concepts are presented here: (1) presses the action of the recessive one. This belief is Statements about dominance and recessiveness are Downloaded from http://online.ucpress.edu/abt/article-pdf/53/2/94/44793/4449229.pdf by guest on 27 September 2021 not only incorrectbut it can lead to a whole series of statements about the appearanceof characters,about further errors. Students, for example, often errone- what is seen or can be detected, not about the ously conclude that because the dominant allele is the underlying genetic situation; (2) The relationship stronger, it therefore ought to become more common between two alleles of a gene falls on a continuous in the course of evolution. scale from one of complete dominance and recessive- There are other common misconceptions, among ness to a complete lack thereof. In the latter case, the them that: expression of both alleles is seen in either of two ways 1) Dominance operates at the genotypic level. -
Basic Genetic Terms for Teachers
Student Name: Date: Class Period: Page | 1 Basic Genetic Terms Use the available reference resources to complete the table below. After finding out the definition of each word, rewrite the definition using your own words (middle column), and provide an example of how you may use the word (right column). Genetic Terms Definition in your own words An example Allele Different forms of a gene, which produce Different alleles produce different hair colors—brown, variations in a genetically inherited trait. blond, red, black, etc. Genes Genes are parts of DNA and carry hereditary Genes contain blue‐print for each individual for her or information passed from parents to children. his specific traits. Dominant version (allele) of a gene shows its Dominant When a child inherits dominant brown‐hair gene form specific trait even if only one parent passed (allele) from dad, the child will have brown hair. the gene to the child. When a child inherits recessive blue‐eye gene form Recessive Recessive gene shows its specific trait when (allele) from both mom and dad, the child will have blue both parents pass the gene to the child. eyes. Homozygous Two of the same form of a gene—one from Inheriting the same blue eye gene form from both mom and the other from dad. parents result in a homozygous gene. Heterozygous Two different forms of a gene—one from Inheriting different eye color gene forms from mom mom and the other from dad are different. and dad result in a heterozygous gene. Genotype Internal heredity information that contain Blue eye and brown eye have different genotypes—one genetic code. -
Basic Genetic Concepts & Terms
Basic Genetic Concepts & Terms 1 Genetics: what is it? t• Wha is genetics? – “Genetics is the study of heredity, the process in which a parent passes certain genes onto their children.” (http://www.nlm.nih.gov/medlineplus/ency/article/002048. htm) t• Wha does that mean? – Children inherit their biological parents’ genes that express specific traits, such as some physical characteristics, natural talents, and genetic disorders. 2 Word Match Activity Match the genetic terms to their corresponding parts of the illustration. • base pair • cell • chromosome • DNA (Deoxyribonucleic Acid) • double helix* • genes • nucleus Illustration Source: Talking Glossary of Genetic Terms http://www.genome.gov/ glossary/ 3 Word Match Activity • base pair • cell • chromosome • DNA (Deoxyribonucleic Acid) • double helix* • genes • nucleus Illustration Source: Talking Glossary of Genetic Terms http://www.genome.gov/ glossary/ 4 Genetic Concepts • H describes how some traits are passed from parents to their children. • The traits are expressed by g , which are small sections of DNA that are coded for specific traits. • Genes are found on ch . • Humans have two sets of (hint: a number) chromosomes—one set from each parent. 5 Genetic Concepts • Heredity describes how some traits are passed from parents to their children. • The traits are expressed by genes, which are small sections of DNA that are coded for specific traits. • Genes are found on chromosomes. • Humans have two sets of 23 chromosomes— one set from each parent. 6 Genetic Terms Use library resources to define the following words and write their definitions using your own words. – allele: – genes: – dominant : – recessive: – homozygous: – heterozygous: – genotype: – phenotype: – Mendelian Inheritance: 7 Mendelian Inheritance • The inherited traits are determined by genes that are passed from parents to children. -
Glossary/Index
Glossary 03/08/2004 9:58 AM Page 119 GLOSSARY/INDEX The numbers after each term represent the chapter in which it first appears. additive 2 allele 2 When an allele’s contribution to the variation in a One of two or more alternative forms of a gene; a single phenotype is separately measurable; the independent allele for each gene is inherited separately from each effects of alleles “add up.” Antonym of nonadditive. parent. ADHD/ADD 6 Alzheimer’s disease 5 Attention Deficit Hyperactivity Disorder/Attention A medical disorder causing the loss of memory, rea- Deficit Disorder. Neurobehavioral disorders character- soning, and language abilities. Protein residues called ized by an attention span or ability to concentrate that is plaques and tangles build up and interfere with brain less than expected for a person's age. With ADHD, there function. This disorder usually first appears in persons also is age-inappropriate hyperactivity, impulsive over age sixty-five. Compare to early-onset Alzheimer’s. behavior or lack of inhibition. There are several types of ADHD: a predominantly inattentive subtype, a predomi- amino acids 2 nantly hyperactive-impulsive subtype, and a combined Molecules that are combined to form proteins. subtype. The condition can be cognitive alone or both The sequence of amino acids in a protein, and hence pro- cognitive and behavioral. tein function, is determined by the genetic code. adoption study 4 amnesia 5 A type of research focused on families that include one Loss of memory, temporary or permanent, that can result or more children raised by persons other than their from brain injury, illness, or trauma. -
Evolution at Multiple Loci
Evolution at multiple loci • Linkage • Sex • Quantitative genetics Linkage • Linkage can be physical or statistical, we focus on physical - easier to understand • Because of recombination, Mendel develops law of independent assortment • But loci do not always assort independently, suppose they are close together on the same chromosome Haplotype - multilocus genotype • Contraction of ‘haploid-genotype’ – The genotype of a chromosome (gamete) • E.g. with two genes A and B with alleles A and a, and B and b • Possible haplotypes – AB; Ab; aB, ab • Will selection at the A locus affect evolution of the B locus? Chromosome (haplotype) frequency v. allele frequency • Example, suppose two populations have: – A allele frequency = 0.6, a allele frequency 0.4 – B allele frequency = 0.8, b allele frequency 0.2 • Are those populations identical? • Not always! Linkage (dis)equilibrium • Loci are in equilibrium if: – Proportion of B alleles found with A alleles is the same as b alleles found with A alleles; and • Loci in linkage disequilibrium if an allele at one locus is more likely to be found with a particular allele at another locus – E.g., B alleles more likely with A alleles than b alleles are with A alleles Equilibrium - alleles A locus, A allele p = 15/25 = 0.6 a allele q = 1-p = 0.4 B locus, B allele p = 20/25 = 0.8; b allele q = 1-p = 0.2 Equilibrium - haplotypes Allele B with allele A = 12; A without B = 3 times; AB 12/15 = 0.8 Allele B with allele a = 8; a without B = 2 times; aB 8/10 = 0.8 Equilibrium graphically Disequilibrium - alleles -
Timeline of Genomics (1901–1950)*
Research Resource Timeline of Genomics (1901{1950)* Year Event and Theoretical Implication/Extension Reference 1901 Hugo de Vries adopts the term MUTATION to de Vries, H. 1901. Die Mutationstheorie. describe sudden, spontaneous, drastic alterations in Veit, Leipzig, Germany. the hereditary material of Oenothera. Thomas Harrison Montgomery studies sper- 1. Montgomery, T.H. 1898. The spermato- matogenesis in various species of Hemiptera and ¯nds genesis in Pentatoma up to the formation that maternal chromosomes only pair with paternal of the spermatid. Zool. Jahrb. 12: 1-88. chromosomes during meiosis. 2. Montgomery, T.H. 1901. A study of the chromosomes of the germ cells of the Metazoa. Trans. Am. Phil. Soc. 20: 154-236. Clarence Ervin McClung postulates that the so- McClung, C.E. 1901. Notes on the acces- called accessory chromosome (now known as the \X" sory chromosome. Anat. Anz. 20: 220- chromosome) is male determining. 226. Hermann Emil Fischer(1902 Nobel Prize Laure- 1. Fischer, E. and Fourneau, E. 1901. UberÄ ate for Chemistry) and Ernest Fourneau report einige Derivate des Glykocolls. Ber. the synthesis of the ¯rst dipeptide, glycylglycine. In Dtsch. Chem. Ges. 34: 2868-2877. 1902 Fischer introduces the term PEPTIDES. 2. Fischer, E. 1907. Syntheses of polypep- tides. XVII. Ber. Dtsch. Chem. Ges. 40: 1754-1767. 1902 Theodor Boveri and Walter Stanborough Sut- 1. Boveri, T. 1902. UberÄ mehrpolige Mi- ton found the chromosome theory of heredity inde- tosen als Mittel zur Analyse des Zellkerns. pendently. Verh. Phys -med. Ges. WÄurzberg NF 35: 67-90. 2. Boveri, T. 1903. UberÄ die Konstitution der chromatischen Kernsubstanz. Verh. Zool. -
Thomas Hunt Morgan
NATIONAL ACADEMY OF SCIENCES T HOMAS HUNT M ORGAN 1866—1945 A Biographical Memoir by A. H . S TURTEVANT Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1959 NATIONAL ACADEMY OF SCIENCES WASHINGTON D.C. THOMAS HUNT MORGAN September 25, 1866-December 4, 1945 BY A. H. STURTEVANT HOMAS HUNT MORGAN was born September 25, 1866, at Lexing- Tton, Kentucky, the son of Charlton Hunt Morgan and Ellen Key (Howard) Morgan. In 1636 the two brothers James Morgan and Miles Morgan came to Boston from Wales. Thomas Hunt Morgan's line derives from James; from Miles descended J. Pierpont Morgan. While the rela- tionship here is remote, geneticists will recognize that a common Y chromosome is indicated. The family lived in New England^ mostly in Connecticut—until about 1800, when Gideon Morgan moved to Tennessee. His son, Luther, later settled at Huntsville, Alabama. This Luther Morgan was the grandfather of Charlton Hunt Morgan; the latter's mother (Thomas Hunt Morgan's grand- mother) was Henrietta Hunt, of Lexington, whose father, John Wesley Hunt, came from Trenton, New Jersey, and was one of the early settlers at Lexington, where he became a hemp manufacturer. Ellen Key Howard was from an old aristocratic family of Baltimore, Maryland. Her two grandfathers were John Eager Howard (Colonel in the Revolutionary Army, Governor of Maryland from 1788 to 1791) and Francis Scott Key (author of "The Star-spangled Ban- ner"). Thomas Hunt Morgan's parents were related, apparently as third cousins. -
BIOL 116 General Biology II Common Course Outline
South Central College BIOL 116 General Biology II Common Course Outline Course Information Description This course covers biology at the organismal. population and system level. It will emphasize organismal diversity, population and community ecology and ecosystems. Students will gain an understanding of how evolutionary advances have occurred among organisms within a kingdom due to natural selection. This course involves a weekly three hour lab. (prerequisites: Score of 86 or above on the Sentence Skills portion of the Accuplacer test or ENGL 0090 and score of 50 or above on College Level Math portion of the Accuplacer test or MATH 0085) MNTC area 3 Total Credits 4.00 Total Hours 80.00 Types of Instruction Instruction Type Credits Lecture Lab Pre/Corequisites Prerequisite Score of 50 or above on the College Level Math portion of the Accuplacer test or MATH 0085 Prerequisite Score of 86 or above on the Sentence Skills portion of the Accuplacer test or ENGL 0090 Course Competencies 1 Appreciate and explain the process of scientific discovery and methodology Learning Objectives List and describe the steps of the scientific method Demonstrate the process of scientific discovery in the lab 2 Develop the skills necessary to engage in the scientific method Learning Objectives Formulate a hypothesis based on observations Develop a method to test a hypothesis Collect and analyze data Interpret data and form a conclusion Communicate scientific findings Common Course Outline - Page 1 of 4 Monday, September 24, 2012 3:42 PM 3 Explain the theory of -
Evolutionary Forces: Generation X Simulation to Launch the Genx
Biol 303 1 Lecture Notes Evolutionary Forces: Generation X Simulation To launch the GenX software: 1. Right-click ‘My Computer’. 2. Click ‘Map Network Drive’ 3. Don’t worry about what drive letter is assigned in the upper part of the dialogue box that pops up. In the lower part, enter: \\hopper\labshare. You can probably get this without typing by clicking the little triangle on the right of the field. 4. Using Windows Explorer, Click on the Labshare folder, then on Biology 303 folder, then on the GenX icon to start. A. Recall from lecture: Evolution is a change over time in allele (gene) frequencies within a population. There are 4 main evolutionary forces: Mutation - new allele arises by physical change in structure of DNA Genetic drift - random change in allele frequency by chance, important mainly in small populations (remember that variance ↑ as sample size ↓) Isolation - two populations that exchange members (even just 1 disperser per generation) do not diverge genetically. Isolated populations can diverge due to drift or natural selection Natural selection - differential survival and reproduction of individuals with different phenotypes Also recall that a locus is fixed for a single allele if any allele reaches a frequency of one. When a population holds only one allele, evolution cannot occur (until an alternative allele arrives by mutation or immigration). B. Background for Generation X simulations: Generation X is a computer model of evolution. It allows you to alter the four evolutionary forces, either one at a time or in combination, and see the effect on genotype and allele frequencies.