Mammals As Evolutionary Partners
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Mammal Abundances and Seed Traits Control the Seed Dispersal and Predation Roles of Terrestrial Mammals in a Costa Rican Forest
BIOTROPICA 45(3): 333–342 2013 10.1111/btp.12014 Mammal Abundances and Seed Traits Control the Seed Dispersal and Predation Roles of Terrestrial Mammals in a Costa Rican Forest Erin K. Kuprewicz1 Department of Biology, University of Miami, 1301 Memorial Drive, Coral Gables, FL, 33146, U.S.A. ABSTRACT In Neotropical forests, mammals act as seed dispersers and predators. To prevent seed predation and promote dispersal, seeds exhibit physical or chemical defenses. Collared peccaries (Pecari tajacu) cannot eat some hard seeds, but can digest chemically defended seeds. Central American agoutis (Dasyprocta punctata) gnaw through hard-walled seeds, but cannot consume chemically defended seeds. The objectives of this study were to determine relative peccary and agouti abundances within a lowland forest in Costa Rica and to assess how these two mammals affect the survival of large seeds that have no defenses (Iriartea deltoidea, Socratea exorrhiza), physical defenses (Astrocaryum alatum, Dipteryx panamensis), or chemical defenses (Mucuna holtonii) against seed predators. Mammal abundances were deter- mined over 3 yrs from open-access motion-detecting camera trap photos. Using semi-permeable mammal exclosures and thread-marked seeds, predation and dispersal by mammals for each seed species were quantified. Abundances of peccaries were up to six times higher than those of agoutis over 3 yrs, but neither peccary nor agouti abundances differed across years. Seeds of A. alatum were predomi- nantly dispersed by peccaries, which did not eat A. alatum seeds, whereas non-defended and chemically defended seeds suffered high levels of predation, mostly by peccaries. Agoutis did not eat M. holtonii seeds. Peccaries and agoutis did not differ in the distances they dispersed seeds. -
Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
Genetic Structure of the North American Porcupine (Erethizon Dorsatum) Across Western Texas
GENETIC STRUCTURE OF THE NORTH AMERICAN PORCUPINE (ERETHIZON DORSATUM) ACROSS WESTERN TEXAS by Erica D. Thomas A Thesis Submitted in Partial Fulfillment Of the Requirements for the Degree MASTER OF SCIENCE Major Subject: Biology West Texas A&M University Canyon, Texas December 2017 Approved: Rocky Ward, PhD Date Chairman, Thesis Committee W. David Sissom, PhD Date Member, Thesis Committee William P. Johnson, M.S. Date Member, Thesis Committee W. David Sissom, PhD Date Department Head Dean, Academic College Date Angela N. Spaulding Date Dean, Graduate School ii ABSTRACT The North American porcupine (Erethizon dorsatum) is a highly mobile, generalist species with an extensive geographical distribution in North America. The porcupine was first documented in southwestern Texas in the early 20th century, but today occurs in most of the western two-thirds of the state. This species is relatively unstudied within the Great Plains ecoregion of North America, with no genetic studies having been conducted for this species in Texas. The objectives of this study were to describe population genetic metrics of porcupines across 3 ecoregions in western Texas by examining variation in 17 polymorphic microsatellites, and to confirm the applicability of the zinc finger protein sequencing method to identify sex in a population of North American porcupines. Tissue samples from 106 porcupines were collected from the High Plains, Rolling Plains, and Edwards Plateau ecoregions of western Texas. Sex was accurately identified for 92 porcupine tissue samples by directly sequencing a short portion (195 base pairs) of the zinc finger protein gene. Sixteen base pair substitutions between Zfx and Zfy chromosomes denoted the sex of individuals; heterozygous sequence for males (Zfx and Zfy), homozygous sequence for females (Zfx only). -
The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads
www.nature.com/scientificreports OPEN The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads Liliya Doronina1,*, Andreas Matzke1,*, Gennady Churakov1,2, Monika Stoll3, Andreas Huge3 & Jürgen Schmitz1 Received: 13 October 2016 Solving problematic phylogenetic relationships often requires high quality genome data. However, Accepted: 25 January 2017 for many organisms such data are still not available. Among rodents, the phylogenetic position of the Published: 03 March 2017 beaver has always attracted special interest. The arrangement of the beaver’s masseter (jaw-closer) muscle once suggested a strong affinity to some sciurid rodents (e.g., squirrels), placing them in the Sciuromorpha suborder. Modern molecular data, however, suggested a closer relationship of beaver to the representatives of the mouse-related clade, but significant data from virtually homoplasy- free markers (for example retroposon insertions) for the exact position of the beaver have not been available. We derived a gross genome assembly from deposited genomic Illumina paired-end reads and extracted thousands of potential phylogenetically informative retroposon markers using the new bioinformatics coordinate extractor fastCOEX, enabling us to evaluate different hypotheses for the phylogenetic position of the beaver. Comparative results provided significant support for a clear relationship between beavers (Castoridae) and kangaroo rat-related species (Geomyoidea) (p < 0.0015, six markers, no conflicting data) within a significantly supported mouse-related clade (including Myodonta, Anomaluromorpha, and Castorimorpha) (p < 0.0015, six markers, no conflicting data). Most of an organism’s phylogenetic history is fossilized in their heritable genomic material. Using data from genome sequencing projects, particularly informative regions of this material can be extracted in sufficient num- bers to resolve the deepest history of speciation. -
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
Hdl 128344.Pdf
PUBLISHED VERSION Elizabeth Reed The contribution of cave sites to the understanding of Quaternary Australian megafauna records Proceedings of the 17th International Congress of Speleology, Volume 1 Edition 2, 2017 / Moore, K., White, S. (ed./s), vol.1, pp.2 © 2017 Australian Speleological Federation Inc, This work is licensed under Creative Commons Attribution ShareAlike International License (CC-BY-SA). To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. Individual Authors retain copyright over their work, while allowing the conference to place this unpublished work under a Creative Commons Attribution ShareAlike which allows others to freely access, use, and share the work, with an acknowledgement of the work’s authorship and its initial presentation at the 17th International Congress of Speleology, Sydney NSW Australia.. Published version https://www.caves.org.au/resources/category/37-conference- proceedings?start=40 PERMISSIONS http://creativecommons.org/licenses/by/4.0/ 6 October 2020 http://hdl.handle.net/2440/128344 Te Contribution of Cave Sites to the Understanding of Quaternary Australian Megafauna Records. Elizabeth Reed1,2 Afliation: 1Environment Institute and School of Physical Sciences, Te University of Adelaide, Adelaide, South Australia, AUSTRALIA. 2Palaeontology department, South Australian Museum, Adelaide, South Australia. Abstract Since the frst discoveries of megafauna fossils in the Wellington Valley of New South Wales in the 1830s, caves have featured prominently in the study of Quaternary Australia. Today, most of the well-dated, strati- fed Quaternary megafauna sites are known from caves. Tis refects the relatively stable preservation environment within Australian caves, where skeletal remains may lay undisturbed for hundreds of thousands of years. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Rediscovery of Armenian Birch Mouse, Sicista Armenica (Mammalia, Rodentia, Sminthidae)
Vestnik zoologii, 51(5): 443–446, 2017 DOI 10.1515/vzoo-2017-0054 UDC UDC 599.323.3(479.25) REDISCOVERY OF ARMENIAN BIRCH MOUSE, SICISTA ARMENICA (MAMMALIA, RODENTIA, SMINTHIDAE) M. Rusin1*, A. Ghazaryan2, T. Hayrapetyan2, G. Papov2, A. Martynov3 1 Schmalhausen Institute of Zoology NAS of Ukraine, B. Khmelnitskogo, 15, Kyiv, 01030 Ukraine 2Yerevan State University, A. Manoogian 1, Yerevan 0025, Armenia 3Zoological Museum, National Museum of Natural History, B. Khmelnitskogo, 15, Kyiv, 01030 Ukraine *Corresponding author E-mail: [email protected] Rediscovery of Armenian Birch Mouse, Sicista armenica (Mammalia, Rodentia, Sminthidae). Rusin, M., Ghazaryan, A., Hayrapetyan, T., Papov, G., Martynov, A. — Armenian birch mouse is one of the least known species of mammals of Eurasia. It was described as a separate species based on three specimen trapped in 1986. From that time no other Sicista was found in Armenia. In 2015 we surveyed Central and Northern Armenia and established that probably population from the type locality is lost. But we found another population on Sevan Pass. Due to our observations the species meets Critically Endangered B2a+bIV category of the IUCN Red List. Key words: Sicista, Caucasus, Armenia, subalpine meadows, extinction, Critically Endangered. Introduction Armenian birch mouse, Sicista armenica Sokolov and Baskevich, 1988, is one of the sibling species in the S. caucasica group, which are S. caucasica s. str., S. kluchorica, S. kazbegica and S. armenica. All of these species were described based on diff erent chromosomal numbers in 1980th: S. caucasica 2n = 32, nF = 48; S. kluchorica 2n = 24, nF = 44; S. kazbegica 2n = 40–42, nF = 50–52; S. -
Host–Parasite Relationships and Co-Infection of Nasal Mites of Chrysomus Ruficapillus (Passeriformes: Icteridae) in Southern Brazil
Iheringia Série Zoologia Museu de Ciências Naturais e-ISSN 1678-4766 www.scielo.br/isz Fundação Zoobotânica do Rio Grande do Sul Host–Parasite relationships and co-infection of nasal mites of Chrysomus ruficapillus (Passeriformes: Icteridae) in southern Brazil Fabiana Fedatto Bernardon1 , Carolina S. Mascarenhas1 , Joaber Pereira Jr2 & Gertrud Müller1 1. Laboratório de Parasitologia de Animais Silvestres (LAPASIL), Departamento de Microbiologia e Parasitologia, Instituto de Biologia, Universidade Federal de Pelotas, Caixa Postal 354, 96010-900, Pelotas, RS, Brazil. ([email protected]) 2. Laboratório de Biologia de Parasitos de Organismos Aquáticos (LABPOA), Instituto de Oceanografia, Universidade Federal do Rio Grande, Caixa Postal 474, 96650-900 Rio Grande, Rio Grande do Sul, Brazil Received 14 December 2017 Accepted 8 May 2018 Published 21 June 2018 DOI: 10.1590/1678-4766e2018025 ABSTRACT. One hundred twenty-two Chrysomus ruficapillus were examined in southern Brazil, in order to research the presence of nasal mites and the parasite-host relationships. Nasal mite infections were analyzed for: presence of Ereynetidae and Rhinonyssidae considering the total number of hosts examined; Sexual maturity of males (juveniles and adults); Periods of bird collection and presence of co-infections. Were identified five taxa, four belongs to Rhinonyssidae (Sternostoma strandtmanni, Ptilonyssus sairae, P. icteridius and Ptilonyssus sp.) and one to Ereynetidae (Boydaia agelaii). Adult males were parasitized for one taxa more than juvenile males. Co-infections occurred in 22 hosts, between two, three and four taxa, belonging to Ereynetidae and Rhinonyssidae.The co-infections were more prevalent in austral autumn / winter. The host-parasite relations and co-infections by nasal mites in C. -
A Statistical Analysis of Marine Mammal Dispersal Routes Across Major Ocean Regions Using Beta Diversity at the Generic Level
A Statistical Analysis of Marine Mammal Dispersal Routes Across Major Ocean Regions Using Beta Diversity at the Generic Level A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at George Mason University By Carlos Mauricio Peredo Bachelor of Science Seton Hill University, 2012 Director: Mark D. Uhen, Assistant Professor Department of Atmospheric, Oceanic and Earth Sciences Spring Semester 2015 George Mason University Fairfax, VA Copyright 2015 Carlos Mauricio Peredo All Rights Reserved ii DEDICATION Dedicated to my wonderful parents, Mauricio and Julie Peredo, who left behind everything they knew and started fresh in a foreign land purely in the pursuit of a better life for their children; to my older brother Miguel, whose witty humor, eternal optimism, and fierce loyalty has kept my head above water and a smile on my face throughout countless tribulations; to my younger brother Julio, who has far surpassed us all in talent and intellect, and who inspires me to never stop learning; and most of all, to my loving wife Molly, who has never stopped believing in me and drives me to settle for nothing less than perfection. iii ACKNOWLEDGEMENTS I would like to thank my committee members, Drs. George, Lyons, and Parsons, for their tireless revisions and hard work on my behalf. I would like to thank George Mason University and the Smithsonian Institution for providing the support and inspiration for much of this project. I would like to thank the Paleobiology Database, and all of its contributors, for their ambitious vision and their relentless pursuit of its execution. -
Red-Rumped Agouti)
UWI The Online Guide to the Animals of Trinidad and Tobago Behaviour Dasyprocta leporina (Red-rumped Agouti) Family: Dasyproctidae (Agoutis) Order: Rodentia (Rodents) Class: Mammalia (Mammals) Fig. 1. Red-rumped agouti, Dasyprocta leporina. [http://upload.wikimedia.org/wikipedia/commons/3/3b/Dasyprocta.leporina-03-ZOO.Dvur.Kralove.jpg, downloaded 12 November 2012] TRAITS. Formerly Dasyprocta aguti, and also known as the Brazilian agouti and as “Cutia” in Brazil and “Acure” in Venezuela. The average Dasyprocta leporina weighs approximately between 3 kg and 6 kg with a body length of about 49-64 cm. They are medium sized caviomorph rodents (Wilson and Reeder, 2005) with brown fur consisting of darker spots of brown covering their upper body and a white stripe running down the centre of their underside (Eisenberg, 1989). Show sexual dimorphism as the males are usually smaller in size than the females but have a similar appearance (Wilson and Reeder, 2005). Locomotion is quadrupedal. Forefeet have four toes while hind feet (usually longer than forefeet) have 3. Small round ears with short hairless tail not more than 6 cm in length (Dubost 1998). UWI The Online Guide to the Animals of Trinidad and Tobago Behaviour ECOLOGY. Dasyprocta leporina is found in the tropical forests of Trinidad and conserved in the Central Range Wildlife Sanctuary at the headwaters of the Tempuna and Talparo watersheds in central Trinidad (Bacon and Ffrench 1972). They are South American natives and are distributed widely in Venezuela, French Guiana and Amazon forests of Brazil (Asquith et al. 1999; Dubost 1998). Has widespread distribution in the Neotropics (Eisenberg 1989; Emmons and Feer 1997). -
A Species-Level Phylogenetic Supertree of Marsupials
J. Zool., Lond. (2004) 264, 11–31 C 2004 The Zoological Society of London Printed in the United Kingdom DOI:10.1017/S0952836904005539 A species-level phylogenetic supertree of marsupials Marcel Cardillo1,2*, Olaf R. P. Bininda-Emonds3, Elizabeth Boakes1,2 and Andy Purvis1 1 Department of Biological Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, U.K. 2 Institute of Zoology, Zoological Society of London, Regent’s Park, London NW1 4RY, U.K. 3 Lehrstuhl fur¨ Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany (Accepted 26 January 2004) Abstract Comparative studies require information on phylogenetic relationships, but complete species-level phylogenetic trees of large clades are difficult to produce. One solution is to combine algorithmically many small trees into a single, larger supertree. Here we present a virtually complete, species-level phylogeny of the marsupials (Mammalia: Metatheria), built by combining 158 phylogenetic estimates published since 1980, using matrix representation with parsimony. The supertree is well resolved overall (73.7%), although resolution varies across the tree, indicating variation both in the amount of phylogenetic information available for different taxa, and the degree of conflict among phylogenetic estimates. In particular, the supertree shows poor resolution within the American marsupial taxa, reflecting a relative lack of systematic effort compared to the Australasian taxa. There are also important differences in supertrees based on source phylogenies published before 1995 and those published more recently. The supertree can be viewed as a meta-analysis of marsupial phylogenetic studies, and should be useful as a framework for phylogenetically explicit comparative studies of marsupial evolution and ecology.