95 Birth Defects Exec Summ
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The Advantage of Genome-Wide Microarrays Over Targeted Approaches
PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/70828 Please be advised that this information was generated on 2021-09-24 and may be subject to change. COPY NUMBER VARIATION AND MENTAL RETARDATION opmaak koolen.indd 1 10-09-2008 10:11:31 Copy number variation and mental retardation The studies presented in this thesis were performed at the Department of Human Genetics, Radboud University Nijmegen Medical Center, Nijmegen, the Netherlands. The research was supported by a grant from the Netherlands Organization for Health Research and Development (ZonMw). Publication of this thesis was financially supported by the Department of Human Genetics, Radboud University Nijmegen Medical Center, Nijmegen, the Netherlands. ISBN/EAN 978-90-6464-290-6 © 2008 D.A. Koolen All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, by print or otherwise, without permission in writing from the author. Cover photo: Printed by: Ponsen & Looijen B.V., Wageningen opmaak koolen.indd 2 10-09-2008 10:11:31 Copy number variation and mental retardation Een wetenschappelijke proeve op het gebied van de Medische Wetenschappen Proefschrift ter verkrijging van de graad doctor aan de Radboud Universiteit Nijmegen op gezag van de rector magnificus prof. mr. S.C.J.J. Kortmann, volgens besluit van het College van Decanen in het openbaar te verdedigen op donderdag 6 november 2008 om 15.30 uur precies door David Aljosja Koolen geboren op 22 juni 1976 te ‘s-Gravenhage opmaak koolen.indd 3 10-09-2008 10:11:32 Promotor: Prof. -
Whole Chromosome Gain Does Not in Itself Confer Cancer-Like Chromosomal Instability
Whole chromosome gain does not in itself confer cancer-like chromosomal instability Anders Valinda,1, Yuesheng Jina, Bo Baldetorpb, and David Gisselssona aDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Biomedical Center B13, Lund SE22184, Sweden; and bDepartment of Oncology, Lund University, Skåne University Hospital, Lund SE22185, Sweden Edited* by George Klein, Karolinska Institutet, Stockholm, Sweden, and approved November 4, 2013 (received for review June 12, 2013) Constitutional aneuploidy is typically caused by a single-event and chromosomal instability in humans is using constitutional meiotic or early mitotic error. In contrast, somatic aneuploidy, aneuploidy syndromes as a model. Cells from patients with these found mainly in neoplastic tissue, is attributed to continuous syndromes provide a good experimental system for studying the chromosomal instability. More debated as a cause of aneuploidy effects of aneuploidy on overall genome stability on representative is aneuploidy itself; that is, whether aneuploidy per se causes human material. Such cells typically only have a single or a limited chromosomal instability, for example, in patients with inborn set of stem-line chromosome aberrations compared with tumor aneuploidy. We have addressed this issue by quantifying the level cell lines, which typically harbor a multitude of genetic lesions, as of somatic mosaicism, a proxy marker of chromosomal instability, well as a cancer phenotype. The few earlier studies performed on in patients with -
REVIEW ARTICLE Genetic Factors in Congenital Diaphragmatic Hernia
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector REVIEW ARTICLE Genetic Factors in Congenital Diaphragmatic Hernia A. M. Holder,* M. Klaassens,* D. Tibboel, A. de Klein, B. Lee, and D. A. Scott Congenital diaphragmatic hernia (CDH) is a relatively common birth defect associated with high mortality and morbidity. Although the exact etiology of most cases of CDH remains unknown, there is a growing body of evidence that genetic factors play an important role in the development of CDH. In this review, we examine key findings that are likely to form the basis for future research in this field. Specific topics include a short overview of normal and abnormal diaphragm development, a discussion of syndromic forms of CDH, a detailed review of chromosomal regions recurrently altered in CDH, a description of the retinoid hypothesis of CDH, and evidence of the roles of specific genes in the development of CDH. Congenital diaphragmatic hernia (CDH [MIM 142340, Overview of Normal and Abnormal Diaphragm 222400, 610187, and 306950]) is defined as a protrusion Development of abdominal viscera into the thorax through an abnormal opening or defect that is present at birth. In some cases, this protrusion is covered by a membranous sac. In con- The development of the human diaphragm occurs be- trast, diaphragmatic eventrations are extreme elevations, tween the 4th and 12th wk of gestation. Traditional views rather than protrusions, of part of the diaphragm that is of diaphragm development suggest that the diaphragm 9 often atrophic and abnormally thin. CDH is a relatively arises from four different structures. -
Genetic Testing Options
GENETIC TESTING OPTIONS Most babies are born free of birth defects. Of those who are affected, the more common types are Trisomy defects, such as Down syndrome, and Open Neural Tube defects such as Spina Bifida. Testing is optional. Some people want genetic testing done as early as possible, to reassure them that their baby is normal, or to provide a diagnosis early enough in the pregnancy so that all options remain open. Others, who would not change their pregnancy plans in the event of a birth defect, seek to know whether the baby is normal or affected, and if there is a birth defect, to use the remainder of the pregnancy to educate themselves and prepare for a family member with special needs. It is also helpful for your doctor to be prepared for all eventualities. Still others prefer not to undergo any genetic testing. Our goal is to educate you about the options so that you can make a fully informed decision, as well as to support your decision. SCREENING TESTS A screening test is NOT the same as a diagnostic test. The screening process is basically a customized statistical risk assessment, to determine your personal risk. A positive screening test is NOT a diagnosis of a birth defect. It provides information that guides decisions about diagnostic testing. First Look Test (typically scheduled between 12wks-13wks 3days) The First Look Test is offered at Emerson Hospital MFM by Brigham & Women’s perinatologists and at Brigham & Women’s Hospital. It is a non-invasive test that assesses whether you are at increased risk of having a baby with Down syndrome or Trisomy 18. -
Application of Neural Networks for Classification of Patau, Edwards
Catic et al. BMC Medical Genomics (2018) 11:19 DOI 10.1186/s12920-018-0333-2 RESEARCHARTICLE Open Access Application of Neural Networks for classification of Patau, Edwards, Down, Turner and Klinefelter Syndrome based on first trimester maternal serum screening data, ultrasonographic findings and patient demographics Aida Catic1,2* , Lejla Gurbeta1,4, Amina Kurtovic-Kozaric1,3, Senad Mehmedbasic2 and Almir Badnjevic1,4,5,6 Abstract Background: The usage of Artificial Neural Networks (ANNs) for genome-enabled classifications and establishing genome-phenotype correlations have been investigated more extensively over the past few years. The reason for this is that ANNs are good approximates of complex functions, so classification can be performed without the need for explicitly defined input-output model. This engineering tool can be applied for optimization of existing methods for disease/syndrome classification. Cytogenetic and molecular analyses are the most frequent tests used in prenatal diagnostic for the early detection of Turner, Klinefelter, Patau, Edwards and Down syndrome. These procedures can be lengthy, repetitive; and often employ invasive techniques so a robust automated method for classifying and reporting prenatal diagnostics would greatly help the clinicians with their routine work. Methods: The database consisted of data collected from 2500 pregnant woman that came to the Institute of Gynecology, Infertility and Perinatology “Mehmedbasic” for routine antenatal care between January 2000 and December 2016. During first trimester all women were subject to screening test where values of maternal serum pregnancy- associated plasma protein A (PAPP-A) and free beta human chorionic gonadotropin (β-hCG) were measured. Also, fetal nuchal translucency thickness and the presence or absence of the nasal bone was observed using ultrasound. -
Profile of Disorders of Sexual Differentiation in the Northeast
The Egyptian Journal of Medical Human Genetics (2012) 13, 197–205 Ain Shams University The Egyptian Journal of Medical Human Genetics www.ejmhg.eg.net www.sciencedirect.com ORIGINAL ARTICLE Profile of disorders of sexual differentiation in the Northeast region of Cairo, Egypt Rabah M. Shawky a,*, Sahar M. Nour El-Din b a Pediatrics Department, Ain-Shams University, Egypt b Medical Genetics Center, Ain-Shams University, Egypt Received 26 September 2011; accepted 19 January 2012 Available online 27 April 2012 KEYWORDS Abstract This retrospective study has been conducted to determine the frequency, types, clinical Sex differentiation; presentation and associated genomic errors in patients with sex differentiation errors and their Intersex; relatives. The present study comprised of 908 index patients with sex differentiation errors who were Ambiguous genitalia; registered at the Medical Genetics Center (ASUMGC), Ain Shams University. Out of 28,736 Gonads; patients attending the center and 660,280 patients attending the Pediatrics clinic during the interval Genital surgery of 1966–2009. Our results showed that, the frequency among all patients attending the Pediatrics Hospital was 0.14%. Disorders of sex chromosome (Klinefelter syndrome and Turner syndrome) were the commonest, followed by mullerian dysgenesis. The commonest age of presentation was adolescence (>15–18 years) (36.56%), followed by patients aged 18 years or more (24.88%). In our study, 32.26% presented with primary female infertility, 27.86% adolescent girls presented with primary amenorrhea, 16.29% presented with male infertility, 10.35% presented with ambiguous gen- italia at birth or soon afterward, 6.60% were females who presented with delayed 2ry sexual charac- ters and short stature, 3.96% of our cases were boys who presented with microtestes and delayed 2ry sexual development and 2.75% presented with hirsutism. -
SUPPORTING FAMILIES, CELEBRATING LIVES a WORD from 2 Our Chair
SUMMER 2019 Soft UK SUPPORTING FAMILIES, CELEBRATING LIVES A WORD FROM 2 Our Chair Welcome to a packed newsletter, full to participate of family stories, information and in some work updates. We hope you enjoy reading being carried and finding out what is going on in out by the University of Leeds, into the world of SOFT UK! the delivery of challenging news There is so much in these pages but after ultrasound scan. They are I would just like to highlight one focusing on identifying the specific article – the blog that Alison Pearson words, phrases and behaviours that (mum to Isabel) has written, with sonographers should use to deliver another mum of a little girl with different types of unexpected or Down’s syndrome, for Public Health challenging news that they identify England on the use of language. during ultrasound. Interestingly, there is no widespread agreement on We know that the words we speak how this should be done. The result can leave a huge impact and create is that sonographers often decide a lasting memory - either good or for themselves what works best, and bad; for those who hear them. Joel their conclusions are not always in Osteen said: "Be careful what you line with parent preferences. say. You can say something hurtful One, small step, but hopefully we in ten seconds, but ten years later, can get your views and experiences the wounds are still there." We hear across and make a difference for that from many families when they families in the future. talk of how they were told of a high Enjoy the rest of the newsletter risk or diagnosis of Trisomy, or when and do keep letting us know your medical professionals talk about the feedback, contributions and ideas for future for their child with Edwards’ or future editions. -
Prenatal Diagnosis by FISH of a 22Ql 1 Deletion in Two Families J Med Genet: First Published As 10.1136/Jmg.35.2.165 on 1 February 1998
I Med Genet 1998;35:165-168 165 Prenatal diagnosis by FISH of a 22ql 1 deletion in two families J Med Genet: first published as 10.1136/jmg.35.2.165 on 1 February 1998. Downloaded from Marie-France Portnoi, Nicole Joye, Marie Gonzales, Suzanne Demczuk, Laurent Fermont, Gilles Gaillard, Guy Bercau, Genevieve Morlier, Jean-Louis Taillemite Abstract balanced translocation t(I 1;22)(q23;ql 1) was We report on prenatal diagnosis by FISH shown in the father's karyotype; in the second of a sporadic 22qll deletion associated case trisomy X was associated with a 22ql 1 with DiGeorge syndrome (DGS) in two deletion in the fetus. fetuses after an obstetric ultrasonographic examination detected cardiac anomalies, Materials and methods an interrupted aortic arch in case 1 and KARYOTYPING AND FISH tetralogy of Fallot in case 2. The parents Fetal blood samples were obtained for karyo- decided to terminate the pregnancies. At type analysis and FISH. Cells were harvested necropsy, fetal examination showed char- from cultures of phytohaemagglutinin stimu- acteristic facial dysmorphism associated lated lymphocytes and spread onto slides for with congenital malformations, confirm- the production of G banded or R banded chro- ing full DGS in both fetuses. In addition to mosomes. the 22ql 1 deletion, trisomy X was found in FISH of metaphase chromosomes using dig- the second fetus and a reciprocal balanced oxigenin labelled cosmid probes D22S75 translocation t(l 1 ;22) (q23;ql 1) was found (N25, ONCOR) from the DGS chromosome in the clinically normal father of case 1. region was carried out basically according to These findings highlight the importance Pinkel et al.' This probe was premixed with a of performing traditional cytogenetic control cosmid (D22S39) in 22q13.3 facilitat- analysis and FISH in pregnancies with a ing chromosome identification. -
Double Aneuploidy in Down Syndrome
Chapter 6 Double Aneuploidy in Down Syndrome Fatma Soylemez Additional information is available at the end of the chapter http://dx.doi.org/10.5772/60438 Abstract Aneuploidy is the second most important category of chromosome mutations relat‐ ing to abnormal chromosome number. It generally arises by nondisjunction at ei‐ ther the first or second meiotic division. However, the existence of two chromosomal abnormalities involving both autosomal and sex chromosomes in the same individual is relatively a rare phenomenon. The underlying mechanism in‐ volved in the formation of double aneuploidy is not well understood. Parental ori‐ gin is studied only in a small number of cases and both nondisjunctions occurring in a single parent is an extremely rare event. This chapter reviews the characteristics of double aneuploidies in Down syndrome have been discussed in the light of the published reports. Keywords: Double aneuploidy, Down Syndrome, Klinefelter Syndrome, Chromo‐ some abnormalities 1. Introduction With the discovery in 1956 that the correct chromosome number in humans is 46, the new area of clinical cytogenetic began its rapid growth. Several major chromosomal syndromes with altered numbers of chromosomes were reported, such as Down syndrome (trisomy 21), Turner syndrome (45,X) and Klinefelter syndrome (47,XXY). Since then it has been well established that chromosome abnormalities contribute significantly to genetic disease resulting in reproductive loss, infertility, stillbirths, congenital anomalies, abnormal sexual development, mental retardation and pathogenesis of malignancy [1]. Clinical features of patients with common autosomal or sex chromosome aneuploidy is shown in Table 1. © 2015 The Author(s). Licensee InTech. This chapter is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. -
Y Chromosome CNV Attribute to the Normal
ical C lin as Zhang et al., J Clin Case Rep 2018, 8:6 C e f R o l e DOI: 10.4172/2165-7920.10001125 a p n o r r t u s o J Journal of Clinical Case Reports ISSN: 2165-7920 Case Report Open Access Y Chromosome CNV Attribute to the Normal Female Phenotype of a 46XX/46XY Chimerism: A Case Report Zhang H1, Gao L1, Zhao P1, Liu C1, Li W1,2, Hong M1, Zhong X1, Chen D1, Dai Y1*, Wang J1,3* and Zou C1,3* 1Department of Medicine, Clinical Medical Research Center, the Second Clinical Medical School of Jinan University, Shenzhen People’s Hospital, P.R.China 2Department of Medicine, Clinical Medical Research Center, The Second Clinical College of Jinan University, Shenzhen People’s Hospital, Shenzhen, P.R.China 3Department of Medicine, The Second Clinical College of Jinan University, Shenzhen People’s Hospital, Shenzhen, P.R.China Abstract Background: Down’s syndrome (DS) is caused by abnormal chromosome 21, which is the highest incidence of birth defect disease all the world. The phenomenon of 46XX/46XY chimeras was reported very rarely. In many cases, they were diagnosed at birth, because of the presence of ambiguous external genitalia. A case of the phenomenon of 46XX/46XY chimeras has been described in this report. Case presentation: A 23-year-old woman at 19 weeks of gestation was transferred to our hospital due to fetal chromosomal abnormalities of antenatal diagnosis. There was no abnormality of appearance through past medical history and ultrasonic examination, and hormonal levels also were normal. -
The Combined Test
Antenatal Screening Antenatal Screening for Down's syndrome, Edwards syndrome and Patau syndrome The Combined Test Questions and Answers for women considering the test The Wolfson Institute of Preventive Medicine Barts and The London School of Medicine and Dentistry Antenatal Screening This leaflet answers some of the common questions women ask about their screening test – we hope you find it helpful. You are welcome to discuss the test with your midwife or consultant before you decide whether you would like to be screened. If you have any further questions screening staff at the Wolfson Institute are available to talk to you on 020 7882 6293. What is Down's syndrome? What are Edwards and Patau syndrome? Down's syndrome (trisomy 21) is Edwards syndrome (trisomy 18) is defined by the presence of an extra defined by the presence of an extra chromosome number 21 in the cells chromosome number 18 in the cells of the fetus or affected individual. In of the fetus or affected individual an unscreened population about 1 in while Patau syndrome (trisomy 13) every 500 babies is born with Down's is defined by an extra chromosome syndrome. Usually it is not inherited number 13 in the cells of the fetus or and so a baby can be affected affected individual. Both syndromes even if there is no history of Down's affect multiple organs with a high risk syndrome in the family. of fetal death. Down's syndrome is the most At 12 weeks of pregnancy Edwards common cause of severe learning syndrome has a prevalence of about disability and is often associated 1 in 1,500 and Patau syndrome has a with physical problems such as heart prevalence of about 1 in 3,500 in an defects and difficulties with sight and unscreened population. -
South Carolina Birth Defects Program Resource Guide
South Carolina Birth Defects Program Resource Guide A South Carolina where healthy births are promoted, every birth defect matters, and families impacted by birth defects are supported. Table Of Contents Introduction Introduction 1 Thousands of families in South Carolina have been impacted by a birth defect. Birth defects are structural changes which are already there when a baby is born that can affect any part of the body (e.g., heart, brain, South Carolina Birth Defects Program Mission and Vision 2 foot). They may affect how the body looks, works, or both. Birth defects can vary from mild to severe. The well-being of each child affected with a birth defect depends mostly on which organ or body part is involved, General Information on Birth Defects in South Carolina 4 how much it is affected, early detection, and timely entry into Early Intervention services. Cardiovascular (Heart) Birth Defects in South Carolina 5 Learning that a child has a birth defect can be difficult for a family. Families often feel alone when they find out about a birth defect. They are not alone. According to the Centers for Disease Control and Prevention, birth Interview with a Parent of a Child with a Critical Congenital Heart Birth Defect 7 defects affect 1 in 33 babies born every year and cause 1 in 5 infant deaths. In 2004, South Carolina government officials created a way to track these important conditions through a law called “The South Carolina Birth Orofacial Birth Defects 11 Defects Act.” The South Carolina Birth Defects Program (SCBDP) was created through this law.