RESEARCH ARTICLE Extensive Chromosomal Reorganization in the Evolution of New World Muroid Rodents (Cricetidae, Sigmodontinae): Searching for Ancestral Phylogenetic Traits Adenilson Leão Pereira1, Stella Miranda Malcher1, Cleusa Yoshiko Nagamachi1,2, Patricia Caroline Mary O’Brien3, Malcolm Andrew Ferguson-Smith3, Ana Cristina Mendes- Oliveira4, Julio Cesar Pieczarka1,2* 1 Laboratório de Citogenética, Centro de Estudos Avançados da Biodiversidade, ICB, Universidade Federal do Pará, Belém, Pará, Brasil, 2 CNPq Researcher, Brasília, Brasil, 3 Cambridge Resource Center for Comparative Genomics, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom, 4 Laboratório de Zoologia e Ecologia de Vertebrados, ICB, Universidade Federal do Pará, Belém, Pará, Brasil *
[email protected] OPEN ACCESS Citation: Pereira AL, Malcher SM, Nagamachi CY, O’Brien PCM, Ferguson-Smith MA, Mendes-Oliveira Abstract AC, et al. (2016) Extensive Chromosomal Reorganization in the Evolution of New World Muroid Sigmodontinae rodents show great diversity and complexity in morphology and ecology. Rodents (Cricetidae, Sigmodontinae): Searching for This diversity is accompanied by extensive chromosome variation challenging attempts to Ancestral Phylogenetic Traits. PLoS ONE 11(1): reconstruct their ancestral genome. The species Hylaeamys megacephalus–HME (Oryzo- e0146179. doi:10.1371/journal.pone.0146179 myini, 2n = 54), Necromys lasiurus—NLA (Akodontini, 2n = 34) and Akodon sp.–ASP (Ako- Editor: Riccardo Castiglia, Universita degli Studi di dontini, 2n = 10) have extreme diploid numbers that make it difficult to understand the Roma La Sapienza, ITALY rearrangements that are responsible for such differences. In this study we analyzed these Received: June 5, 2015 changes using whole chromosome probes of HME in cross-species painting of NLA and Accepted: December 13, 2015 ASP to construct chromosome homology maps that reveal the rearrangements between Published: January 22, 2016 species.